Array 1 362999-364490 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWK01000001.1 Salmonella enterica subsp. enterica serovar Meleagridis strain BCW_2879 NODE_1_length_488579_cov_2.93491, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 362999 29 100.0 32 ............................. CCTGCGTATATCTGGACGGAAACGAACTGGTT 363060 29 100.0 32 ............................. ACACCCCGACTGTAGATGAAATTCCCGTCGTT 363121 29 100.0 32 ............................. CTTACCGCAGAACCGTACATGCGGCTCATTTC 363182 29 100.0 32 ............................. GTAATTCCTCGCCGTAAACGTAACGGAAATAC 363243 29 100.0 32 ............................. ATCAACGATGCCAAACTCGGTGGCGATTGGCA 363304 29 100.0 32 ............................. GCCGCGAAATCGCAGCGCCGCATGACGACTCT 363365 29 100.0 32 ............................. TAATATTCTTATCCAATATTTTATTGCTTGAG 363426 29 100.0 32 ............................. TAGATAGTGAACTTTATGAAGAAGTAATGAAG 363487 29 100.0 32 ............................. GGGATGTCACAATGATAAGGCGTTTTCCGTTA 363548 29 100.0 32 ............................. GCGGATAATTCAACAGCGTTGGGCTATAGCAC 363609 29 100.0 32 ............................. GTTGAAATCTTGGCCGCAGCGGAGGAAATGGG 363670 29 100.0 32 ............................. CGCAATTACACTGACAATTCGTCAGCGCAAAC 363731 29 100.0 32 ............................. AAATTTGGCTTGATGCCGCAAACAAAGAACTT 363792 29 100.0 32 ............................. AACTGCTTAAATCAAAAGGACTTCACTAATGA 363853 29 100.0 32 ............................. CCCGTGTGCCCTTTACCCTTGCCGTAGTCCAA 363914 29 100.0 32 ............................. ACATTGATTGATACGTGTATCAATCGCTGGTC 363975 29 100.0 32 ............................. TCGCGGATTTTCTTAAACGCAGCAATAATATT 364036 29 100.0 32 ............................. AGTTCAGTCCAGTTAACGCTGAACGGCGAACC 364097 29 100.0 32 ............................. ATCGTTGTCGTTCGTGTTGCTGAGGGTGCGAA 364158 29 100.0 32 ............................. GGGCCCCCACGATTTAGCCTTTGACAATTATA 364219 29 100.0 32 ............................. GAAAGCTACGACTTACCAGACTGAAGCCATAA 364280 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 364341 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 364402 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 364463 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTAGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 380747-382242 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWK01000001.1 Salmonella enterica subsp. enterica serovar Meleagridis strain BCW_2879 NODE_1_length_488579_cov_2.93491, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 380747 29 100.0 32 ............................. TTACTTGATGTTGCCATAGAAGAATCTGACCC 380808 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 380869 29 100.0 32 ............................. TCATCCGTGTTGACAATAATACTGGTTATACC 380930 29 100.0 32 ............................. TACCCGCCTTTTATTTCGCTATATCAAAGGGG 380991 29 100.0 32 ............................. GCCGCGATTTGCTGCGCCTCCGGTACGGCAAC 381052 29 100.0 32 ............................. AAAATCACCAGATCCGGGCGCAAGGGCGCCGC 381113 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 381174 29 100.0 32 ............................. TTCTTTACAAAGAAGAGGGCTACCCGGTTGCG 381235 29 100.0 32 ............................. TTGTGACTTTGATAGTGATTGAAAGCACCTGT 381296 29 100.0 32 ............................. TGAGTTGCGCTTCATACGCTCTTTTTGCTCTG 381357 29 100.0 32 ............................. ATGCGTAGTCCAGCAGCTGCGCGGCGGCGTTT 381418 29 100.0 32 ............................. CCCATCCCCAGAATTTACCGATATGCTCCACA 381479 29 100.0 33 ............................. GGCCTAGGTGATCCGTTGGCGTGGAACGTTAGC 381541 29 100.0 32 ............................. CAACTGCGACACATACCTCTCACACCATCACT 381602 29 100.0 32 ............................. AAAAAAGGGAAAAAGGGGGGGCTGTTTCTCCT 381663 29 100.0 32 ............................. CCATCCGAAAAAGCCGCGTTTACGCCGATGTT 381724 29 100.0 32 ............................. GTTTATAAAAAACACTCGCAAACAAGATGATT 381785 29 100.0 32 ............................. CTCTCAAATGCCTGCCACATCACGCGCGACGC 381846 29 100.0 32 ............................. CTGGGAACCCACTTCATCGGAGCGGCTTCACC 381907 29 100.0 33 ............................. CCGTATTGAGGCGCTATTCCGTGCTGTGCCGCC 381969 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 382030 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 382091 29 100.0 32 ............................. TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 382152 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 382213 29 100.0 0 ............................. | A [382240] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //