Array 1 2224-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQM01000011.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1597b x_contig000011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2223 30 96.7 37 ....A......................... CTTGTGCCAAAAGAAGAGCAAGAGCAAATGAGCTTTG 2156 30 100.0 36 .............................. TGTGGCAGTATGCTTTTGATTATTATTGCAAAAATA 2090 30 96.7 36 .......T...................... TTCTTCACGTTTAGCCCTTGCGTCTTCTAAAGCCTT 2024 30 100.0 36 .............................. AGTAAATTGCCTATCATTTCTTAACTTTCCTTTACT 1958 30 100.0 35 .............................. GACAAATATTTAGAGAAAAAGGATGGGGATGAACT 1893 30 100.0 37 .............................. TTCTTGCAAAATTGGTTACCAGGCATTGTTTCAAGCA 1826 30 100.0 36 .............................. CTTGCCCTTTTGAAAAGGATTCCTAATGCCAACCTA 1760 30 100.0 36 .............................. AAGAGAAGAGTTCATCTCAAGTGTTCTGTTCAGCAG 1694 30 100.0 34 .............................. AATATATCCATCTGTTTTTTTGATAAACATTCTA 1630 30 96.7 37 A............................. TTCTTGCAAAATTGGTTACCAGGCATTGTTTCAAGCA 1563 30 100.0 36 .............................. CTCAATGGAATATGCAAACTGTTCGCCAGTTTATAT 1497 30 100.0 36 .............................. GTGGTAAATTTGGTAACTTATCAAAAGATGAAATCG 1431 30 100.0 35 .............................. ACCTGCATTACCAAACTTATCAAAAAATGGGGATA 1366 30 100.0 35 .............................. GACCTAAATAAATTTTTAGCCTTTTTCAAGATAGC 1301 30 100.0 35 .............................. CGTTGATGGATTTTCTAATCAAAAAAGTATAGATA 1236 30 100.0 34 .............................. CAAATTTAAAGGGAAAAAATGTTGAATGAATTTT 1172 30 100.0 35 .............................. TGATACTGTGTCATAATTGTCGTATCAACTTCGGC 1107 30 100.0 36 .............................. TGGTCAATTTTGTTTTTTTAATCCAAAAAGAAAATG 1041 30 100.0 34 .............................. GCAATTCCTTTAAGTTTAACAGATCCTACATCAA 977 30 100.0 34 .............................. GAAACAAGGCGGAGCATACGGACTGGATACCTAT 913 30 100.0 36 .............................. GGCGTTTAGGCTTTACTAGGGGTTGTGCAAATTACG 847 30 100.0 37 .............................. AATTTGGCAATGAGGAGTGGTATGAAAAAAGGGAGTA 780 30 100.0 36 .............................. TAAAGAGCTTTGCAATGGAACGCCACTAAATAAGGA 714 30 100.0 37 .............................. ATATATCAGAGCAAGATAGCAATGCCACTAATACAAA 647 30 100.0 36 .............................. GCTACTCTTATGACCAAAAGGAGGAAATAGCAAACA 581 30 100.0 35 .............................. GTTAGCCTTGTTCATCTCAGGAACTGCCACAATTC 516 30 100.0 34 .............................. GGCGGTATTTTTTCAAAGTTTCAATGCTCATTTT 452 30 100.0 35 .............................. TCAAACTTGTCATTGTTTTGGTTAAGGTTATCGTA 387 30 100.0 34 .............................. GGTTGGCATTAGAAGTCCTTTAACAACGTAATTC 323 30 100.0 35 .............................. CTATCAACTTTCAAAAAAAATCACATTTGAAAAAT 258 30 100.0 37 .............................. CAAACTGCAAAAGAAACTTTGAGCGAAACTCAATTTT 191 30 100.0 34 .............................. TCAGAAGTTACTGCAGAAACGACTTTGCAAAGTC 127 30 100.0 36 .............................. TATTGCAAGATTTTTACCTATGCCTTTCTCATTTGC 61 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 34 30 99.7 36 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : GTGTGAGCTATTAGCTCAAGTATAGTTTTATAAATGCTTTCCATATGGTTATTATAATATAAAAAAGGTAAGCTACAAATCCTAAAAATGTGAATTTTCTATTTTGGGTTTAATGAGATTTTATCTATGGATTTAAATGAATTTATAGATTATTTTGAGATAGCAAAAAGGATAAATGAGGCTTAAAGCTTGATATCTTTATATCTTGTATCAGTTTTACCAGTGTAAGGCTTTGAGTAGCTAAAATCAAAATGACAATAAAATTTTATTAAAGCAAAAACCAAAACCATAATAATAAAACTAAACATTTACAAGCCTTTTTTAAAAAGTATAACATAAAGGATTAAATATGGCAAATCCTACTCTAACCTTTGGAGTTGATTTAAGTGAGTTTAATAGTGCTTTTAATAAGATCAACAAAACAGCCACTACCCTAAGCGATGTTTTGGATAAAAATATCAAAACAGCTACAACAGCGATAAAAAATGCAAATCACAAAA # Right flank : CTTTTGGAGCAATCTTTAAAAACTCTCTTGAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 4176-98 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQM01000016.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1597b x_contig000016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 4175 30 100.0 36 .............................. AAGAGAAGAGTTCATCTCAAGTGTTCTGTTCAGCAG 4109 30 100.0 35 .............................. CAATAGGGCTTATCCCATAGCCACCGCCAAAGGTA 4044 30 100.0 34 .............................. TAAGCACTCGTTTATAACTTCGACATTTACGCTA 3980 30 100.0 36 .............................. CTTGCCCTTTTGAAAAGGATTCCTAATGCCAACCTA 3914 30 100.0 34 .............................. CAAATTTAAAGGGAAAAAATGTTGAATGAATTTT 3850 30 100.0 39 .............................. AAAACTCAAGATAAATGAAATTATATTATCGCCAAAATT 3781 30 100.0 36 .............................. TTTTACAACAAGGCAGGAAAGAGGTAGAGGCTCAAC 3715 30 100.0 36 .............................. AGATGGCAAAAATGAGATAAATAGCCATTACGAAAA 3649 30 100.0 36 .............................. TTTTATTTGAGATTGTCTCTCTTTATTTTGATAGTG 3583 30 100.0 35 .............................. CCAAAAGAGCCTTGAACATTATTTACAACAGAATC 3518 30 100.0 35 .............................. TTTAAGCTTCATATATTTCACAACTTCTTGTTTTT 3453 30 100.0 34 .............................. GAAACGGCATTTTATGGGTAGATTATACCATAAA 3389 30 100.0 34 .............................. TTTTGCGCTTGTGAAATTGCCCAATTATTCCGTT 3325 30 100.0 36 .............................. TCTATCATTTTTTAGCTCTCTATCAAATACAAAACA 3259 30 100.0 35 .............................. CTCTATGGTATTCACCTGCCTTTTTAAAGCTTCTT 3194 30 100.0 36 .............................. TAAACTCTTCTCTTTGGCTCATTTATTATCCCCTAT 3128 30 100.0 34 .............................. CCACCAAATAGCCCTGAGTATCTCTCAGCAGTGG 3064 30 100.0 34 .............................. CTACATACACGCCACCAAGCAAACAAAGCCTAGT 3000 30 100.0 39 .............................. AATCCAAAGTATGCAACAACCCGAAAACTATTTTAAATA 2931 30 100.0 34 .............................. AAATTTGTGAGATTATCATCTTCAAATCTATTTA 2867 30 100.0 35 .............................. GTATATTCTAAACATAAAAGGACTTTTACCGAAAC 2802 30 100.0 35 .............................. TTGCTTGAATTTGGCATTATTTCTAATCCGTCATC 2737 30 100.0 33 .............................. CTAGGGCTATGTAAATTTTTTTCTGCTATTCTA 2674 30 100.0 35 .............................. TTTTGGCATAAAAAAAGCTTTATGGGTTGATACTG 2609 30 100.0 38 .............................. TTTGAATATAAGCGTAACTGATGAGTTTAAAGAAGCTT 2541 30 100.0 37 .............................. GGCTACATCCACGAAAAACACACGAGGCGTTTAACGG 2474 30 100.0 35 .............................. CGTAGCGAATGTGACGACGCAATGCAAAACGCTCA 2409 30 100.0 34 .............................. AGCGTGAGATTTTCAAAATACAACGCTAAGAGAA 2345 30 100.0 34 .............................. GAATACTTTGCACACGTGAAATACAAGATAGCAT 2281 30 100.0 34 .............................. GAAGACGGATTGGAGGCTTAGATATGGCAACTAT 2217 30 100.0 36 .............................. TATTGCAAGATTTTTACCTATGCCTTTCTCATTTGC 2151 30 100.0 33 .............................. TTTTGGAGCAATCTTTAAAAACTCTCTTGATTA 2088 30 100.0 38 .............................. CAAAGTCTGAGAAATTTTCTCAACACTTACTTCAAGGG 2020 30 100.0 35 .............................. GAAGGTAGAGTTTACAGTATGTTCTCTACTTACTT 1955 30 100.0 34 .............................. TCTGAAAATGATATTATCTATCAAACGTTTATTT 1891 30 100.0 35 .............................. TTCAAGCCAAAGTATATCAAGGGCGAACCTCTACA 1826 30 100.0 36 .............................. TCAGCAACTACAATACCGCTATTATTTAGAAAATTA 1760 30 100.0 36 .............................. GTAATTCCGTTCTGTTTCATTCTAGCCATATTTAAA 1694 30 100.0 34 .............................. CAGACGGACAGTTTATACTAGAGATTGGTGGTAT 1630 30 100.0 35 .............................. AGAAATTAGAGACTATTTAAATGCAAAATACAAGC 1565 30 100.0 34 .............................. ATCAAGTTACCTCTAAAAACGATTGGCTAGATTT 1501 30 100.0 34 .............................. CCTACCGTTTCAGAAAGAGGCGTTAGCGTAAAGA 1437 30 100.0 35 .............................. TTTACAGCAAGGGCGTAAAGAAGTAGAGGCACAGC 1372 30 100.0 39 .............................. CTGCACGATAGAGGGAATTATCTCAAGGTGAAAAATTGA 1303 30 100.0 36 .............................. AACGTTTACATATGCTGGTAGGTTAGGGTCATTTAG 1237 30 100.0 37 .............................. GCAAATATGAAAATCGTTGAAAATTGCGAATACGGGT 1170 30 100.0 38 .............................. AAGTATGTAGCGGATTTCATATATGTTAAAACGTGCAA 1102 30 100.0 35 .............................. TACCTAGGCACCCCTCAAACAGAGGAGAGTATCTA 1037 30 100.0 35 .............................. TGTAGCCGACTATCAAAGAAGAGTTGATGAAGAGC 972 30 100.0 33 .............................. ATAAATCGATTATATCAAAGAGGATTTAAGTCT 909 30 100.0 35 .............................. TATCGTTGCGAATATGACTTCACTGCTGGAAGTTA 844 30 100.0 35 .............................. ACTTCCATTCACGTGCTTTATAATATCATTTTGAA 779 30 100.0 35 .............................. CTTATCTGAGCCAAAGGCACACACGTATTTCGGAT 714 30 100.0 34 .............................. AAAACATACCACTGCTGTTTGAAATCTAGCCCAT 650 30 100.0 34 .............................. ACTTCAAACGGCACTATATGCCTTAATCTATATC 586 30 100.0 36 .............................. CCCAGCCGTTGAAATCTAGCCAATCATTCTTTGAAG 520 30 100.0 36 .............................. TTTTTTAAATTTGAAGGGCTAGTCCCTTTTGAATTT 454 30 100.0 35 .............................. CTTTCCCTCCTCTATCAGTTCTTGCAATGAATTAC 389 30 100.0 36 .............................. CTATGCTATATTTGCTTACCGCTCATATTCTATTTG 323 30 100.0 36 .............................. TTTTTATTTCATACGTAATATTTTCTATTTGAATAT 257 30 100.0 34 .............................. TAACTGGGCGTGAGTTTGGCTTTGCACCATATGG 193 30 100.0 36 .............................. TTATCCTTGATACTTGCTTGATAGCTTGTGAAAAAT 127 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 63 30 100.0 35 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : CCTTTTGAAAAGGATTCCTAATGCCAACCT # Right flank : CAGCAACAAAAACAGCTAAATTTAGTACTTTGTACCAAGTTTTACTATATTTATTTTACTAAAAAATGGCTTAATATAGTATTTATAAAATCATCAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 1-227 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQM01000052.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1597b x_contig000055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1 30 100.0 36 .............................. TATTGCAAGATTTTTACCTATGCCTTTCTCATTTGC 67 30 100.0 33 .............................. TTTTGGAGCAATCTTTAAAAACTCTCTTGATTA 130 30 100.0 38 .............................. CAAAGTCTGAGAAATTTTCTCAACACTTACTTCAAGGG 198 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 100.0 36 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : | # Right flank : | # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 1373-98 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQM01000017.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1597b x_contig000017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1372 30 100.0 38 .............................. CAAAGTCTGAGAAATTTTCTCAACACTTACTTCAAGGG 1304 30 100.0 36 .............................. ATCCAGCCTTTGCAGATACGGAGCTATATCCTGATA 1238 30 100.0 37 .............................. CATAGTCTTTTTTTACATTATCCCAAAAATAAGGCGG 1171 30 100.0 35 .............................. TTTAAGCCTTAAAATCTTCGCCACTTAAAAGCTTA 1106 30 100.0 36 .............................. GAATACTCGCTGAGAGCAATATACTCAATCGCGGAC 1040 30 100.0 33 .............................. CTCAGCGGTGGTAGTTCACGACTATCTTTGCGA 977 30 100.0 35 .............................. GGTAACCGACGGTTGAAAATCTAACTGATTATACA 912 30 100.0 35 .............................. ATAGATACGCTTACCCTATCAACCGTTGCACTTGC 847 30 100.0 35 .............................. TTTAAAAGAGAGCTAATTTATAAGGGCGTAAAAGG 782 30 100.0 35 .............................. TCGGATATCGCTCATCTTTATATCCAAAGCGGAAT 717 30 100.0 35 .............................. GGTTTAGCAAAAAATTCTTGTCTTTTAGTAGCTTC 652 30 100.0 37 .............................. CGTGATGGCAAAGCCGAACAGAGCTATTTTAGCGAGT 585 30 100.0 36 .............................. ACAATAAAAAAAAATATCTATACTAAAGTTCTAAAC 519 30 100.0 35 .............................. ACGGCAAGGGTGGGATTAATCCCTAGTGTATATGA 454 30 100.0 35 .............................. TGAAATTTGGCTAAAAGATGCAATGGGCGCAAGTA 389 30 100.0 34 .............................. TTTGCAAAACAAGCCGAAATAGCAAATCAATATC 325 30 100.0 35 .............................. TTAATATTTTCGCCAAGTAACCGCGAAGTTTTAGC 260 30 100.0 35 .............................. GCTTGTGCTTGTAGCTTTTGTCCTAGCCCCACCAG 195 30 100.0 38 .............................. CGGTGGTTGCGATATTGAAACCTGTCGGATATCACCGC 127 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 20 30 100.0 36 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : GGAGCAATCTTTAAAAACTCTCTTGATT # Right flank : CAGCAACAAAAACAGCTAAATTTAGTACTTTGTACCAAGTTTTACTATATTTATTTTACTAAAAAATGGCTTAATATAGTATTTATAAAATCATCAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //