Array 1 6644-5420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHJ010000002.1 Listeria welshimeri strain FSL W9-1368 NODE_2_length_482817_cov_230.627081, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6643 36 100.0 30 .................................... CGTACAGCATGAGACTGGATATTATATACT 6577 36 100.0 30 .................................... TAAAGCCATCGTCATTCATCGTGACCGTCC 6511 36 100.0 30 .................................... TATAGTTGCGCTGCCAGTTCTCATAGAGGC 6445 36 100.0 30 .................................... ACTCATTTTGTGTAATAGGTCTGTTAGTAT 6379 36 100.0 30 .................................... TTCTTCGTTTTCAAATCTATTAAAAGTAAA 6313 36 100.0 30 .................................... TCGCCCATCTTGACATGTATAATAAATGTG 6247 36 100.0 30 .................................... GAAGACGCCAGACGAATGGCTGTGAGGCTC 6181 36 100.0 30 .................................... CATCTTGGCGGATTTTACTTTTCGTGGTCT 6115 36 100.0 30 .................................... TCAAGGCTTAGAATCACTTAGGTTGTTATG 6049 36 100.0 30 .................................... TAGAACAATGAAGTCCAGCACATTCGTGTT 5983 36 100.0 30 .................................... CCACGCAATTTGTCAAAAATTGCACCATCC 5917 36 100.0 30 .................................... ATTAATTTGCCCTATCTCGAATCTTTTATG 5851 36 100.0 30 .................................... TCAGCAATGCGAATAACTTTAAAAGTCTAC 5785 36 100.0 30 .................................... ACCATCGGGCGTTAAAGCTGTAACTCGTAA 5719 36 100.0 30 .................................... CAATCCGGAACATCGAAACCCTCGCCTATA 5653 36 100.0 30 .................................... TTGTAGAAGTAGAAACTGGCACTATATTGT 5587 36 97.2 30 .......G............................ TTAGCAGGTGGTGCAGATGTTCAGGCCGCA 5521 36 100.0 27 .................................... GAATATTCTTCCCCATCGCTAACAGGG 5458 36 83.3 0 ............CA.....C.....A.A.......G | T,A,T [5423,5426,5431] ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTTCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTAGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACAAAACATGGTTAAATTTAAAAAGGAGTTAGGTATCTATATGACTCAGTATTACTATCTTACTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATTGGCAAAAAATTGTTACGAGACTTAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAGGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //