Array 1 1731-1942 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWR01000302.1 Chromobacterium subtsugae strain MWU2387 contig00302, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1731 29 100.0 32 ............................. CTGATGGAAGTCAGCGGCAAGATCAAGGGCGC 1792 29 100.0 32 ............................. GCTTCCCAGTGGCTGATGCTGCCGACAACGCT 1853 29 100.0 32 ............................. CCGCGAATACTGCCGGCGGATACCTAACATCC 1914 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : TTTTCCAACGCCTACGCCGACAATCTGCTGGCGCAGTGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCAGGCTGCCGCAATTGCAATGCGCCGACCGCGTCTTCCGCCCGGTTCACCAGCAACTGGCGCTGCAGGCGCTGACCGGCTTCGTCTGGCTGAACGCCGAGCGCACGGCGCAGCAAACCCGCTTCGCCGACGGCAGCCGCCTGAGCGCCAACTTCGGCCCGACGGCGGTGGGCGAGGGCGATCAGGCGCTGCCGCCGCAAAGCCTGAGGCTGGAGCTGGCTGGCCAGCCGCCGCGGCTGCTGCGGGTGGCGGATTGCGGCGGCGGCTGATGCGCGACGATAATGCTGTTGTCGTTTTGCGGGCGCTGTGCCTGCAGTGACCTCCGCCGCGCTGGCCGCAATTTGGGTACGGAATTCTCGGTAGGATTGGGAAGCGCTTTTTTGTTTTGAAAAATCAGTGAGTTGAATTTGGT # Right flank : CCCTGGTCGCATGTTCTCGTCACTTGGTCAGCGTGTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 895-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWR01000377.1 Chromobacterium subtsugae strain MWU2387 contig00377, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 894 29 100.0 32 ............................. GCGACTTCTCAGTCGCCTTTTTATCTCGTCCG 833 29 100.0 32 ............................. CAGGCCCGCGACACCGAGCGCGCGGCCGGCGC 772 29 100.0 32 ............................. GGCGGTGCGCAGCTCGCTGACGGTGTCGGTTG 711 29 100.0 32 ............................. ATGGAGCGGGCCGAACTTGAGCTGGCGAAAGA 650 29 100.0 32 ............................. CTGACAGTTGGCGGGATGCTGGTGACGGAAGC 589 29 100.0 32 ............................. CCTCTCGGCGTATGCCACGCCTCACCAGCCCC 528 29 100.0 32 ............................. GCCGAGCTGCACGCCGTCCTGGAGGCAGTCGA 467 29 100.0 32 ............................. GCGTGCCTGGATGGGGTCGCCCAATCGTGGAG 406 29 100.0 32 ............................. TTGACACCTGTTCCTACCGGCCCAGTTTCGGT 345 29 100.0 32 ............................. GCCAGTGCCGACCGTGTCCAGCTTCGCGGCCA 284 29 100.0 32 ............................. TCCGTCCATGCGGCCCGCTCTATTTAGGGCGG 223 29 100.0 32 ............................. TCAGCGATGCGACGTGGTGCGTGACGGCCAGG 162 29 100.0 32 ............................. ACCTGATGCGGATAGCGCTCGATGACGAACCC 101 29 100.0 31 ............................. GACTACAACCGCGTCGTGGTCGCGTTCCAGG 41 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCACGCGAGTGGGGATGAACCG # Left flank : GCCGGCGAAAACGGCGGAGAGCGGGATGAACTCGGCATCGAAGCTGGCGGCGAGTATGCGCGCCAGCGTGGTTTTGCCGACGCCTGGCGGCCCCCACAGAATCATCGAATGCGGCTTGCCGGCCGCCACCGCCAGGCTCAGCGGCTTGCCCGGCCCGATCAGGTGCTGCTGGCCGATGACATCGTCCAGCCGCGCGGGGCGCAGCGCTTCGGCGAGCGGCTTCTGGGGTTCGGCGGCGAACAGGTCGGGCATGGCGGGCTTTGGGCGGGATATTGCGGAGCAACAGTATAACAGTTGGCGGCAGGCATGAAAAAAGCGCCAGCCAGGCGTTTTGGGCGTGCATGCTTGCGGGATGGCGGCAGGCTATGGATCTGGGCGATTTGAGCGAAGTATTGTTCCGGAAAAATCGGTAGAATTTGGGAGTGGTTTTTTATCTTTAAAAATCAGTGGATTGAAAATGG # Right flank : GCGAGGACGGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCGAGTGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 734-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWR01000507.1 Chromobacterium subtsugae strain MWU2387 contig00507, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 733 29 100.0 32 ............................. GGGGATGGATATGCGACGATCCATACCGGCGT 672 29 100.0 32 ............................. GCAACTGCGGCCCTCGCCGGGCGGCATGTCCG 611 29 100.0 33 ............................. TCGAGGCCCTGGACGCCCGCACGCCGGGAGCCG 549 29 100.0 32 ............................. GCTGGCTGGTGTGGCGTCTGGAGCACATCGCA 488 29 100.0 32 ............................. CATCTAGGCGGGCGGAAATAATAGCACGGGAT 427 29 100.0 32 ............................. GAAGCGGCAGCCGAAGCGAAGCTGGCCGATTT 366 29 100.0 32 ............................. CTGCCGGACGGTTCGCAGTTCACCCGCAAGGC 305 29 100.0 32 ............................. AGGCGTTCGAGGTAGATGATTTGCCGCTGCCG 244 29 100.0 32 ............................. ACGCCATCTCAGCGCTGATCGCTGGCGTGCGG 183 29 100.0 32 ............................. GCGGTTCGAGCGGAGCCGTTCTCGTCGCTGTA 122 29 100.0 32 ............................. CCAGTCGGCAAATGGATCGGGGAGGTGTTCGG 61 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : CGATAATGCCGTTGTCGTTTTGCGGGCGCTGTGCCTGCAGTGACCTCCGCCGCGCTGGCCGCGATTTGGGCGCGGAATTCTCGGTAGGATTGGGAAGCGCTTTTTGTTTTGAAAAATCAGTGAGTTGAAATTGG # Right flank : GCCGCGAATACTGCCGGCGGATACCTAACATCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30-424 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWR01000562.1 Chromobacterium subtsugae strain MWU2387 contig00562, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30 29 100.0 32 ............................. CGGAATACCGGGGTCGGTAGGCTGGGGCGTGG 91 29 100.0 32 ............................. AGATAACCCTGACACGACTGCATAGAATCAGC 152 29 100.0 32 ............................. CGGACTTGCCGGCCTGCTCAATCAGCGGGGTG 213 29 100.0 32 ............................. TTCGGGCGTATGAGAACGACACCGGCACGCCG 274 29 100.0 32 ............................. CCGGCATGCCGCTGGCAGCGCGACGGGCCGCA 335 29 100.0 32 ............................. TGGCTGGTGGGGTTGGGGGGAAACAGGCCACT 396 29 93.1 0 .........................C.A. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGTTCCCCACGCGAGTGGGGATGAACCG # Left flank : ATGGAACAGACGTTAACTGACATTGCCGGG # Right flank : CTTGTCTCGAATGCCGGCATGAAAAAAGCGCCCTTGGGGCGCTTTTCGGCATCACGAGCTGAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGTACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGTACCTTGCCCGAGGTGTCGCCGCGCACGGCCGGTTCGGTGTATTCCACTTCGCGGACTACGGTGGTCGGCAGTTCTACGGAGATGGCCTTGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCGAGTGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.00,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 797-281 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWR01000535.1 Chromobacterium subtsugae strain MWU2387 contig00535, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 796 28 96.6 32 -............................ GTGACATGATGGCGCAAATGAGCGCCGATCAC 736 29 100.0 32 ............................. CCGCTGCCGCCTGCGCGCGACACGCAAACCAT 675 29 100.0 32 ............................. TCGAGCTGATCGGCTGCCAGCTTGGCCTTGAT 614 29 96.6 32 ............................C AGGAACGCCAACGACAAGAACATGGCGTCCAC 553 29 93.1 32 ......T.....T................ GCGAGCAGCCAATTGAACGGCGCCGTCGACGA 492 29 96.6 32 .........G................... TGGGTGTAGATGCTCGTCGACTTCGGGTCCGC 431 29 96.6 32 ..................A.......... ACATCCTGAGCGCCGGCGCAGATGAGCCAGCC 370 29 100.0 32 ............................. ACGACATAATTCTGTCCGACCCCTTGGCCACC 309 29 93.1 0 .........................C.A. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.0 32 GTGTTCCCCACGCGAGTGGGGATGAACCG # Left flank : | # Right flank : GCTTGTCTCGAATGCCGGCATGAAAAAAGCGCCCTTGGGGCGCTTTTCGGCATCACGAGCTGAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGTACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGTACCTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGACTACGGTGGTCGGCAGTTCTACGGAGATGGCCTTGCCA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCGAGTGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 463-613 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWR01000588.1 Chromobacterium subtsugae strain MWU2387 contig00588, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 463 29 100.0 32 ............................. CCCATGACGTCGGCGAAAATTTCCGTGTTCAT 524 29 100.0 32 ............................. CTGCAATATTGACACCGGCTCACGGTAGAACG 585 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 37 GTGTTCCCCACGCGAGTGGGGATGAACCG # Left flank : CCCGGCGAAAACGGCGGAGAGCGGGATGAACTCGGCATCGAAGCTGGCGGCGAGGATGCGCGCCAGCGTGGTTTTGCCGACGCCTGGCGGCCCCCACAGAATCATCGAATGCGGCTTGCCGGCCGCCACGGCCAGGCTCAGCGGCTTGCCCGGCCCGATCAGGTGCTGCTGGCCGATGACATCGTCCAGCCGCGCGGGGCGCAGCGCTTCGGCGAGCGGCTTCTGGGGTTCGGCGGCGAACAGGTCGGGCATGGCGGGCTTCGGGCGGGATATTGCGGAGCAACAGTATAACAGTTGGCGGCAGGCATGAAAAAAGCGCCAGCCAGGCGTTTTGGGCTTGCATGCTTGCGGGATGGCGGCAGGTTATGGATCTGGGCGATTTGAGCGGAGTATTGTTCCGGAAAAATCGGTAGAATTTGGGAGTGGTTTTTTGTCTTTAAAAATCAGTGGATTGAAAATGGTG # Right flank : CATC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCGAGTGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.00,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //