Array 1 1766845-1767849 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LR134538.1 Corynebacterium diphtheriae strain NCTC3529 chromosome 1, complete sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
   1766845	    29	  96.6	    32	............................T	GAGGTCTGCTAGGTCATTGTCGGTGTACCCAG	
   1766906	    29	  96.6	    32	............................G	CCGCGCATAGGTATCCGTCTCCTCGGCACGAT	
   1766967	    29	  96.6	    32	............................T	CGTTGACCGTGCTACCGACATGGCTTCGCCCA	
   1767028	    29	  96.6	    32	............................G	CATGGAAAGCCGTTATTGCTGACCATAACGAA	
   1767089	    29	 100.0	    32	.............................	ATCTGGTACGGCAGTGTCTCCTCGGGTAAAAC	
   1767150	    29	 100.0	    32	.............................	CACCAACAAAACGGGAGACAAACACATGGGAA	
   1767211	    29	 100.0	    32	.............................	CACCAACAAAACGGGAGACAAACACATGGGAA	
   1767272	    29	 100.0	    32	.............................	TCCTGCCCCGAGGTGACGTTCACATCCAGCTT	
   1767333	    29	  96.6	    32	............................G	CCGCGCATAGGTATCCGTCTCGTCGGCACGAT	
   1767394	    29	 100.0	    32	.............................	TCCTCGAGGCTGATCTCACTGTCCGTGACGGC	
   1767455	    29	 100.0	    32	.............................	ATGCCACAACACAAAGACCCAAGGCGAGGCAG	
   1767516	    29	  96.6	    32	............................G	CTGTGTGGCGTTGCCACGGTGATGTGTAGGTT	
   1767577	    29	 100.0	    32	.............................	CTCTCTTTTTATCCTTTTGAGGTCCTCTATCG	
   1767638	    29	  96.6	    32	............................G	AAAACCAATACTCCTACAGCTGGAACGACCAA	
   1767699	    29	  93.1	    32	.............T..............G	TTGTTAACGGATCCACGAGACACACCCAGTAT	
   1767760	    29	  93.1	    32	.............T..............G	TCATAATCAGCACTGTCAATCCTCATGTATTG	
   1767821	    29	  96.6	     0	.............T...............	|                               	
==========	======	======	======	=============================	================================	==================
        17	    29	  97.6	    32	GTTTTCCCCGCACCAGCGGGGATGAGCCC	                                	       

# Left flank :   CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAAAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAAGACTAAGCAAATTTGGGTGAATAGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGTCTCTAAACATGCAGCTTGATAAGA
# Right flank :  CAGGGACTTTGAGAACTGGACCGCCGTGATTCCCTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGAATCTGTGTTTTTCATTCAGAGAAATCAGTAAATGATGGCTCTACTAAAAAATTTTGAAAAAACTAACTTTTAATATCTATAGAGTGTATTCTGTGGAAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGATGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCGGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGCTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCGTCTTGCTCGAAAAGGGAAAGATCAG

# Questionable array : NO	 Score: 5.78
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTCCCCGCACCAGCGGGGATGAGCCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-12.70,-12.70] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.77,0.37   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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