Array 1 473-1109 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVZC01000001.1 Allonocardiopsis opalescens strain DSM 45601 Ga0181037_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 473 28 96.4 33 ...........................T CTGATCGCGCCGACTGCCAGGATCGGGCCTGTG 534 28 96.4 32 ...........................T CCTGGACGGCCTGTTCCGCATCGAACTCGACG 594 28 100.0 33 ............................ GCACGCTGGCGACGCCAGCGGCCAGGAGTGCGT 655 28 100.0 33 ............................ GAGGTGGACCGTGACCACGCCCGCAGCGAGCTG 716 28 100.0 33 ............................ CTGCTCGTCCACCCAGTACGCCATCAGGCCGCG 777 28 100.0 33 ............................ GGTGAGGAGGGACTGACGAGACGCCCACACACC 838 28 100.0 34 ............................ GGGGATGCGGGCCTTGCTCTCAGGATGGTTCGTA 900 28 100.0 33 ............................ CCCCGAGGTCGCCACCGCACTGGGCAGCGCCCG 961 28 100.0 33 ............................ CCCGTTGCTGGTCTCCAGCAGCGTCTTCAGCTC 1022 28 96.4 33 ..............G............. CCTCGGCGGCGGCGACGCGGTCGAGCTGACCGT 1083 27 78.6 0 ..............C..A..C.-..AA. | ========== ====== ====== ====== ============================ ================================== ================== 11 28 97.1 33 GTGCGCCCCGCACGAGCGGGGATGGTCC # Left flank : GCAATACACCGCCACACTGCCAAGACCCGCATCCCGGCACGCCCGCACCACCCGCACCGCGATCTCACCACGGTTAGCGATCAGCACCTTGCGCACGGTTCACACCCTCCCTGGCGGCCCTGGCGAGCGGCGGCCGCCCTCGGCCACCCCAGGAGTCTACGACCGCGCACCCCGGCCCGATGGGGCGGCACAGTGTCCCGGGGCGCTGAACACCATCGCGCTGACGTCGCCCGATGCCGTCCGCCCTCGGCCTCCGTGCCCCGAACCCGCCACTGGCAGCCGCTTGCAGCCCAGGATGCCGACCTTCCCGGCCAGGGCCGGATGTCCCTTCAAACGGCAGAATCGCTGGACGGTCCGTCACCGCACGGGGACCATTGAACGCGCCAACAGCTCCCGGACAGCATCCGGCCGCTCCAGGATCCAAGTGAATGAAAACGGCGCCGATACCAGATGGAAGCGCTGGTCAAAAAGGG # Right flank : CCAGAAGCCGGCATCAGGCCGCTGACCTGGTTGATACGTGGGATGTCGGGTCCCGTAGCGGGGTTCGGCCCGTGAGAGGGCCGCGCCTGCGGGACGCGGCGTCAAGCGCCCGCCCGCGAAGCAGCCGGACGCTTGACGTTCGGGGCGCCGCTCGTCGCCCACCGGCCGCGACGGCCGTCACGAATCGGTGTCACAACCCGTGACCGTTCTCAGTTCGTCGTCGGCTTCCCGGCTCCTGGGCACATGCCGCGCGAGCCGGGCGCCTGATGCTGCGGAGTGGTCGTCGCCTCGCCCACGTACACGCCGCAGTCCGGACACTTGGCCGACAGAATGTAGTCGAGTCTCATACCGCCTCCAGGGGCTTGAACGCCGAGGACGCGGAAGGCTCCTCTCCGGCCCGCAGCGCGTGGAGGAAGTACAGCCACGACTTGGCGCCGTTGTGGAACACCACTTCCACCCCGGCCGGTTTCGTGCTGACCGGGTCCGCCGACAGTGCGCCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCCCCGCACGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 280572-282120 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVZC01000004.1 Allonocardiopsis opalescens strain DSM 45601 Ga0181037_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 280572 30 96.7 31 ............................T. AGCGCTGTGACTACCAGGCCAGGAATCTCTT 280633 30 96.7 31 .............................T GGCGCACTAGTAGTTGGTGGCATGTGGGCAA 280694 30 96.7 31 .............................T CCAACCCTGATTCGGGCTCGAACGCAGCTTC 280755 30 100.0 31 .............................. CAGGCAGCGGATCAGGTCGAGCAGCTCCACG 280816 30 96.7 31 ............................T. AGTTGCATGACGCGTGCAAGGCTTCTCAGGA 280877 30 96.7 31 .............................C ATCAGGACAGCCGTGACGATTTCCTCGATCT 280938 30 100.0 31 .............................. TCCCAGCAGGTGTCGGGCCCGCAGATCAGGT 280999 30 96.7 31 .............................A CGGTGGTGTGGTCGAGCCCGGCGGAGTCGAT 281060 30 100.0 31 .............................. CCCAGTACAGCGAGCAGTCGTGGGAGATGCC 281121 30 100.0 31 .............................. TCACATCGTTGTCCGTGTTCGGCGTGGCGTT 281182 30 96.7 31 .............................A GCCGCCTGATCGAGGCGCTGATCTCGGCCGA 281243 30 96.7 31 .............................C ATGTCCCCCACGAGCAGGGGCGAGGTGGCCG 281304 30 100.0 31 .............................. GCACTCGGACGATCTCGGTCTCGGTGCTACG 281365 30 100.0 31 .............................. GCACTCGGACGATCTCGGTCTCGGTGCTACG 281426 30 100.0 31 .............................. GCACTCGGACGATCTCGGTCTCGGTGCTACG 281487 30 96.7 31 .............................T CGGCGCCGCCGTCCCGCTCGATCGACCAGCC 281548 30 96.7 31 .............................T CGGTGTCCTCCGTGGGCGGCGCCAGCAGCAG 281609 28 90.0 31 ................--...........A ACCCATTGAGGGTGAGCGACCCGTCAGCCAG 281668 30 96.7 31 .............................T TCCGCGGCGCGGTCATCACCCAGAGCAAGCG 281729 30 96.7 31 .............................A ACCTGGAGCAGTACTGGAAGTACGGGCGCGG 281790 30 96.7 31 .............................C GGCCCCCGCACCCCGGCCGGCGCCGACCGAA 281851 30 96.7 31 .............................T GGGCGGTGGCCTGGTTCTGGGGGTTGTCCTC 281912 28 93.3 31 ................--............ AGCTGGTCGCCTACGCGCGCGCCTTCGCCGT 281971 30 100.0 29 .............................. AGGCGGACGCTGTCAGGTCGGCCGGTTCC 282030 30 80.0 31 AC.TG.T..C.................... CCATGCTGGTCCCCGACCTGGCCGAGGGGCG 282091 30 96.7 0 ........................A..... | ========== ====== ====== ====== ============================== =============================== ================== 26 30 96.7 31 GTGCTCCCCGCGCGCGCGGGGATGGTCCCG # Left flank : ACGGGCGGCCGGGCCGGACGAGGCATGGGCGTGTCGTGCGAGCCCTCGGCACGTGACCGCCCGACCGAGTCCGACGCGTGCCGTCAAGGCCCGCCGTCCGGCCCGCGCATGGCCCGCGACGGCCGGGCAGCCCGCCCCCTGCCGGTGGAGTCCCCGCGCACGGGGAGGGCCCTGATGGTTCCCAACTCCTGAAGGACGGTCCAGCCGCTCCCCATACGGACGGGGATGGACCCGATCTGGTGCTCGATCTGTGGTGAGCGTCAGGTGTCCCAGGACGAGCGCTCAGCCCTGCGCCTCGTTTCCTGGTCGGCGTGCCGATGCCCGTCCCCGGCGACCGACAGCGGACGCCACCACGCCGATCAGAACCACCGTCAGGACCGCCGCATACGCTTACGTCCATGACCCGAAGCGGTGATGCGAGACAACTGGGCGATTTGTCCGACTTTCGAGAAGTGGTCAGAAATGAGGCCGGACCCCGATAACCCCCCAGGTCGCCGAGG # Right flank : GGAGTGTTGTTCGGGCGTCCCGCGCTCGCGGTGGGCGCGCTGCCTAAAGGCGGGTCGGTCGATTCCGTGGCAGGTGGCGAACCAGTGGGCACGTCGCTGGTTCGGCTCGTCCTTGCGATGGACCGGGCGGCCTTATGGGTCGTGGAACGGACACCTCCCAGCCGCCGGCCATCTGGACCCCTGGGTTCACAGCGCGCTCCTATGGCCGAGTCCTGGAAGTCGGGACGCGGCGGGCTGTGGGCGGCCGGGGTGCCGGACGTGCCCCTGCGGACGGCGGGGTGGCGGCGGGCGGCGGTCCCGCCGCCTCGCCCCCGCCGTCCGCAGCCTCATCGGCGCCGCCTTGAACGGCGTCCTGGCACCCGCCTCCACTGTGTCGTGGGCCGTCCGCCCTACCCCCGCGCCGAAGCGCGCAGAGCCGCGATGAACCACTCCATCGTGGGGACCGCCGGTGTGCGGCCGCCGGCGCCCTCGGGGGCTGGCCAGCCGTTGACGATGGCGAG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.42, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGCGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 309487-310692 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVZC01000005.1 Allonocardiopsis opalescens strain DSM 45601 Ga0181037_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 309487 30 100.0 37 .............................. GGGTGTAGTGCGGGTTGAGGTACACCCCGGCGCCGCC 309554 30 100.0 35 .............................. GCTCCATCAACCAATCCTTCGGATTGGTCAACGGA 309619 30 100.0 35 .............................. TCGGTGGGGTGGTGCGGCTCAGCCACGGCCGGTCT 309684 30 100.0 34 .............................. GTTCTTTCGGACGCCGCAAGGGCGTCCGACGCCT 309748 30 100.0 36 .............................. TCAAACAGCGACCGGAGGTCGTCAGCGACGTCGACG 309814 30 100.0 35 .............................. GATCTCATCCCCGCCTGCTTCAGGCCCGCTCCCTG 309879 28 93.3 35 ...........--................. GTCTTGTCGGCGCCGAGCGGCAAGCGGGGGTTCGG 309942 30 100.0 36 .............................. TCCTCGGCCAGCCGGGCGCGGAGGAACTCAACCAGA 310008 30 100.0 34 .............................. CGGCTCACGCCGCGAGCCAGTACCAGCAGATCTG 310072 30 100.0 37 .............................. ATGACGGTGACCTTGGCCATGTCCATGTCAGCGCCGG 310139 30 100.0 36 .............................. CCGAGCAGGGCGCTCAGGAGGCTGCGCATCCGGCCG 310205 30 100.0 35 .............................. TGCTCCAGCACGGCGATGCGGCCAGTGGCACCCTT 310270 30 100.0 36 .............................. GACATGGTCAGGCAGCCTTCCTGTGGGTCGGGTCGG 310336 30 100.0 37 .............................. CCTGGCGGCCCTGGACCCGCGCCGACGCGGTGTCCGC 310403 30 100.0 37 .............................. AGGGCTGATGCTGCGTCTCGTCTCGGGGCTCCCCCGG 310470 30 100.0 35 .............................. TGCAGATCCACCGCCGCAACCCCCGCTATGGGCCG 310535 30 100.0 34 .............................. CGCCCGGCCGGAGCGCGTCCGGGGACTATGGGTT 310599 30 100.0 34 .............................. CGCACGGCGCCCTGCAGCTGGCTGGCCAGCTCGG 310663 30 96.7 0 ......................T....... | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 99.5 36 GTCGCTGATCATCCCTGGAGGGATCGCAAC # Left flank : GAAAACTCAAACTAGACCGGAAAATCAGAAACAAGCAACCGCGAAGAAGCGAACCGGCGCGCAAATTACTTGATCACGAACTACTCACTGAGCGTCGCGACCCATCCGCCCACAGGAGCCGATCAAGGTAGCGAGCAATTGATCACAGAACAGGCACCAAGGATGCTTCCACTGGCAATCACCCACTCCGACAGCAAGCACTCATTCACCCCGCGCACGCCATAGATTGCCGACTCTCCCAAACTCGACAATTCACTCGACCAATTCATATGGTGGACGTACCCCCCGACTGACGAACACCCACGCGCATCCCCGGTCCGGTACGCTGCACACCCACGAACCGCAACCGACCACGAGCACATCGACCTACACGACCACCACGACAGTGCCCTTGATCGCCACACACGCTGACCTGCACTGATGCACTACCGGCGGACCGCTGCAAAATTGCACCGACGACAGCGCCGAACAGGCACTCCGACCTGCGGCTTTACCCTCGG # Right flank : CGCCTGCCAAAGAAGACCGGACGAGCACGACGCGAGTGGTGCTCGGCCGGTGAGCGGCGAACCGCCTTTAGTCACTGCGCCAGCCTCACTGAGACCCGAATCTCCAAGCGTTCGATCATCGCCGCAGGATCGACGTCTCCGGGGACGCCATGGCCAACTTGGACAGCAGTACGTTCCCGCATTCACCAGCGCCCTCGTCCGAGTCGCCCTGTTCATCCTGACGAGATGAACAGATCGAATCGTCCTTGATGCCCCCATTGCTTGATCAACCGGCCCCATCTCGGCTGGTGGTCGAAGTGAGCGGCGATTTCCTTGCCCGTGGGGAGTGTTCCGTCAGGGCGACGGTTGTCGAGCGCCCAGCGCCATGCTGCCAACTGGACTTGTGGAACGTCGACCGCGCCTTCCCGGTCGCTCTCAGTCGTCTCGGCGTTGTCAGGCGACGCTTGGAGGACGTGCATTTCTGGCTGTGATGTTCCGGATGGCGCTGTTGGAAGGGCACC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGATCATCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 423211-423362 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVZC01000007.1 Allonocardiopsis opalescens strain DSM 45601 Ga0181037_107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 423211 30 100.0 31 .............................. AAAGCTCATCAATGTACACACACCAGCCGCC 423272 30 100.0 31 .............................. GTGGCACAGCTTTGGCCCAAGTTCTAGCGTT 423333 30 86.7 0 ......................G..GA..G | ========== ====== ====== ====== ============================== =============================== ================== 3 30 95.6 32 GTGCTCCCCGCGCGCGCGGGGATGGTCCCC # Left flank : AGGCCGTCGCCCTGCTCCGCGAACGCCTGGCCGTCGAGGAGACCAGCCACACCGTCCTCCGCGACAGCGGCCCCCACGACTGGGAGGAACCCGGCGACATCAGCGAACTGGTCAATCTCTGGTCCCACACCTTCGCCGCCGGCGCCGAGTGGACCCGCGACCTGATCGCCCGCCTCGAAGAAGGCGCCTACACCATGTCCGGCGACCCCGGCGCCGAGGAGCCGCCGGGAGCGGCCGCCGCACGAGCCGCCGAAGGCAGGCGGCTGTCGGCTTGAGCGCGGGGCGGTGCGTCCGCTCACGGGCCCGACCGCGAGCCGAAGACCGCCCCCGACGGCCGACAGCGGACACCACCACGCCCGACGGTGCCGCCGCCTGGTTCGCCCCCTACGATCTCGTCCACGGCTCGAAGCGGCGGCGACAGACAGGTGAGCGATTTGTCCGATTTTCGCGAAGTGGTCAAAACCGAGGCGAGTCGCCGTTAAAGCCCCAGGTCGTGAAGA # Right flank : GGGGCAGGGCATTAGGCCGCTGACCTGGTGATACGTGTGATGTTGGCGGTCGGGGGCGGGTTTTGGCCCGTGAGGGGCCCGCGCTTGCGGAAGGCGGCTTCTAGCAGGCGGTTTGCGGGGTTTTCCTGGGATTTGAACCAGTGGACGTAGACGGTCATCAGTACTTCGACGGTGTGGCCGAGGCGTCGGGCGATTTCGGGTGTGGGGACGCCGTCGCCGATCATGTAGGAGGCGGCGCCGTGCCGCAGGTCGTAAGGCCGCTGAGCGACCCCGGCGCGCAGCTCCGCAGGAGTCAGAGCGGCCTTACGCGCCCGCTTCCAGGTGCGGCGGTACGCCTTGCCGGGTACCACGGCGTGGGGGTCGGTGGGGGTGGCGTACCAGAACAGCCGCCCATCGGGGGCGACTCCGTAGGTGGCGATGTGGTCGCGCAGCGCGGCCACGCCTTCCGGTGGTACGGGAACCTGTCGGATATCGCCGTCGGCACGCCCCTTCAGTCCCCG # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGCGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 432081-432533 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVZC01000007.1 Allonocardiopsis opalescens strain DSM 45601 Ga0181037_107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 432081 28 78.6 31 .GT.C..T.C.................T GCACGGCGTCGTACACCGAGGCGGAGACCTC 432140 28 100.0 31 ............................ AGGTGGTCAGCGGTCCAGGCGAGCGGATGGT 432199 28 100.0 31 ............................ GGGTGAACCGATGCGGATGAGTGCATGCGTC CG [432215] 432260 28 100.0 31 ............................ GCGACGACATCGACACCTTCACCCGCCGAAC 432319 28 96.4 31 ...........................A CTGTCGGGAGGGCCGCCTGATGAGCCGCATC GC [432334] 432380 28 96.4 35 ...........................A TCGCCGCCGCCCAGGTGCACGCCACCCTCGCCGCA GC [432395] 432445 28 96.4 31 ...........................T CGCTCGCATCATCCGTATGGCGCTGGTCGAG 432504 28 89.3 0 .......................CA..T | CC [432513] ========== ====== ====== ====== ============================ =================================== ================== 8 28 94.6 32 GTGCTCCCCGCGCGCGGGGATGGTCCCG # Left flank : GTGCCATGCACCCGACATGGCGCAACCCCACGCCCACGCACCGGCGTTCCCGCACGGTCGGGCGGCCGGTTGCCGCCGTCGCTCCACTGCGGGCGGGGACCCCTACGAGCGGCGGCCCCGACGAGCAACAACGCGGGCAGGCCCCAGAGGCCCGCCGTCGCCAGCACAGCTTAAGGGCCGCCGCTCACCCCGCCCGCAGCTGCGCGCCGACCGCAACCGTCCACCCTCCCCCCAGCCGCCGGACCGCGGCGGCCCCAGGGCATCGAGCCCCAGGGCCGCCGCAACTGAAGCCGTCCCGCACGTGCCGCACGCTAGCCCTCGACCAGCCACAACACCCGCCACCCCAACCGGCGACCTGGCCCGTGTATGGCCCGCAACGGATGCAAACGCCTGCCAACGAACGCCCACAGATGCCACACTCACACGGAGGCCCCGGCAAAGCCGCAGGTCACAGTCACCCCCCATCGACCAGCGCACTAACCCCGACAGGCCCGGACCCC # Right flank : TAGCCCGTAGACGTCAGTATCGATTTCAGACCAATACTCCGCACCGACACAGCACAACCCACCCCGCCACGTGCAAGAGCCCGAGCAACCCCCGTCAAGCCGCTCCCCGCTCGCCCACCGGTCGGCGGCGCAGAGTCGGGTCCTGGACGGCCGGTGGGAGGTAGGTGGACTGGTCGGGTGCGCCCACGTCGGTGCCGGGTGGGACGATCTTGTCGATCCGGTCGAGGATGTCGTCGGTGAGGGCGATATCGACGCCGGCGAGCAGGTCGTCGAGGTGCTCCATCGTGCGCGGGCCGAGGAGGGCGCTGGTCACGCCGGGGTGGGCGATGGCGAAGGCCATCGCGAGGTGGGTCATCCGCAGGCCGGCTTCCTCGGCGAGCGGGACGATCTGTTCGACGGCGTCGAGCCGGCGTTCGTCTCTGAAGTTGACGAAAATGGACGCGCGGTGGAGGTCGGTCTCCTGGCCTCTGCGGATGCGTCCGGTGAGCATCCCCTTGGCG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [16-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16029-15572 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVZC01000009.1 Allonocardiopsis opalescens strain DSM 45601 Ga0181037_109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 16028 30 96.7 31 .............................A TGCGGCCCGACAGACGGCATCGCGGCTACCA 15967 30 96.7 31 .............................C GGCGCGCACGGGAGGCGGCTTCGACGGCGCG 15906 30 100.0 31 .............................. GCAAGAGCACCCTGGCCGACACCGTGATGCG 15845 30 96.7 31 .............................T TCGGCCGCTGGGTCGCCGAGTGCCCGAGCGG 15784 30 96.7 31 .............................C GGCTGCGGCCCGAGCTGCGCAGCCTCCAGAA 15723 30 96.7 31 .............................T CCGGCCCGATCGAGGCGGTCGCCGACGCGGT 15662 30 100.0 31 .............................. ACAGGATCTTGTCCACCGAGCCGCGCACGAT 15601 30 96.7 0 ..........................T... | ========== ====== ====== ====== ============================== =============================== ================== 8 30 97.5 31 GTGCTCCCCGCGCGCGCGGGGATGGTCCCG # Left flank : TCCGGGCGCAATTACGACGATGGAGTCATCTGGTGACGGTCATCGTGTTGACCCAGTGTCCGGTCGGCTTGCGCGGCTTCCTGACGCGCTGGCTACTCGAAATCGCCCCTGGAGTGTTTCTCGGCGGCCCGAGCACACGTATCCGAGAAGCACTGTGGTCCGAGGTCAAACAGTACGCCGGGAACGGCCGCGCGCTCCTCGCCTACAGCACCGACAACGAACAGGGGTTCACCTTCGAGACCCACGACCACAAATGGCATCCGGTGGACCTGGACGGCGTCACCCTCATCCGCCGCCCGACGGACAAAGGAGCTTCGGCCCCTGCGGCGAAACCCGGTTGGAGCAAGGCATCGAAGCGCCGCCGTTTCGGTCAGCGGTGAGCCAGGATGGTTGAGATTGGCTTCTGGGCGACTTCTTTTCGTGCAGTAAGCGTTCTGTCCGAATTTCGAGAAGTGGTGAAAAACCAGGCGATCGGCGGATGAACCCGCAGGTCGCCGAGG # Right flank : CGCGGCGCCGCACCTCCAGCCAGGACACCTAGTGCTCCCCGCGCGGGGATGGTCCTTGCTCGGTGGTGCCGATGCACCACGCCTCGATCGGGCACTCCGCGCGGGGATACGTCCCACCATGCGCATGGTCCGCGCCTCAGCTCCGACCTGCGGGACGCCGGGCCAGGGGAGTCCGGCCCGGCGCCCCGCCCCGGTCAGACGCCGAAGGGCGCGGGGTAGACGATCGTCCCGCTCGGCACTGGCACGGTGTCGTCGAAGACGAGTGCCATCATCGCCTCGTCCGGCACTTCGAAGGACGGCCGTATCCCGTACCGCGACGCCGGCACGAAGCCGAACCTCGGGTAGTACTCGGGGTGGCCGAGTACCAGCACCAGGTTTTCGCCGAGGTCGCGGGCGGCCGAGAGTCCGGCGCGGATCGCGGCCGAACCGGCGCCGCGCCGCTGGAAGCGCGGCAGCACCGCGCACGGCCCGAGTGCCAGCGCTGGGACGCCGTCCACCTG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGCGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 357697-356138 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVZC01000009.1 Allonocardiopsis opalescens strain DSM 45601 Ga0181037_109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================================================================== ================== 357696 30 100.0 31 .............................. ACGCCGACGGCGCGGCCGCGACTCAGGCCCG 357635 30 93.3 31 ............................AT ATCAGAGTAGGGCTAAGAAGGATATTGCAGC 357574 30 96.7 31 .............................T GTACCTTGCTAATCGGTACGGAGGCTATTTC 357513 30 96.7 31 .............................C ATCAACAGTCAATGACACCAGGGCGCCCGGC 357452 30 96.7 31 .............................T GATGCCGTATTTTCTACCACTCCTATTCGCT 357391 30 100.0 31 .............................. TGTCTGACCCCGCCCCCCATTCCGAGCACCG 357330 30 96.7 31 .............................A TCCTGACCTGGATTGTCGGCGGGATTGTCGG 357269 30 96.7 31 .............................C GCGGCCGCGTCCGCGAGGAAGGCCGGCCGCC 357208 30 96.7 31 .............................A CGACCTCGACCAGGCGCCCGAACCTGAACGT 357147 30 96.7 31 .............................A TCAGCTACGACCTGTCGGTGATCGACCGCGA 357086 30 100.0 31 .............................. ACCATGTCCTCGCCCGGCACCCCGCCGGCCG 357025 30 100.0 31 .............................. ACCATGTCCTCGCCCGGCACCCCGCCGGCCG 356964 30 96.7 31 .............................T GTGCGCGCAGCTCGACCGTCATGTGATCGGC 356903 30 96.7 31 .............................A ACCTCGTGCTGGGCGCGAACGCCGTGCAGAT 356842 30 96.7 31 .............................A GAGCGGCGGGCAGGTCGGCGAGCGCCGACCG 356781 28 90.0 31 ........--...................A GGTGGCGCTACGCCGTGCCGGTCGGGTCGCT 356722 30 100.0 40 .............................. TGGGAACGCATCGCCTACGCGATCATCTGGCGTGCTCCCC 356652 30 83.3 31 .C..G.G.G.G................... TGGCCTACGGCCGCGACGGCAGCGTGCTGAT 356591 30 100.0 31 .............................. TGGAGGCCAGGGTGCGGCTGGGGCTGCTCGC 356530 30 100.0 31 .............................. AGGGGTCACGATCCGTTGGCTGGTAGCCCGA 356469 30 96.7 31 ................G............. GCTCTGGCAGGAGCACGCCGGATCGGACCTG 356408 29 93.3 31 .................-...........T CGACCAACGGTCTCGCGCGTGGCTGCGGCTG 356348 30 96.7 31 ................G............. GCTCTGGACCTGGTTGAGAAGGTCATCGGCC 356287 28 86.7 91 .....T..........--...........C GGCAGTGCGCCGGGACCGGCCAGCCCATCCAGTTCTCCCCCGCGCAGGGATGGCACAGCGCCCGGGGCCTGGGCTTGGCCTCTATCGCCGG 356168 30 80.0 0 A..........AGA.........A.C.... | G [356141] ========== ====== ====== ====== ============================== =========================================================================================== ================== 25 30 95.5 34 GTGCTCCCCGCGCGCGCGGGGATGGTCCCG # Left flank : CGGAGCGGGCGCCGCCGTCGCCGCCGTGGGCGTCTACATCCTCTGGCGCTCGCGTCGTAGGCGCTGAACTGGGGTTTTCGCCGCCCGCTGCCGGACCCGTGACGGGTCCGGCAGCGGGCGGCGGCCGTTCGGGCGGGTGTGCCGCCCGCCCGCCGCGGCGCCCGCCGACCGGCGGGCGGCATCGTCACTTGCGACACCGAGCAGCGCACCCCACGAGACGGCGACGGCACGACCCGATCGCCCTTTCGGCAGCGGCCGCTAGTCTCTGTCCCGCCGCCACACGAGCACCTGTCGACCACCACACCAAGACCCCATGCAGCCAGCGCCAACGATGGCCGACAGAGGACGTCGCCACATCGAACGCTGCCACCCCGGGAACCTGCCCGTACGATCCTTCCCGAGGACCGACCGGCGACCGGAGACAGGTGCGTGATTTGTCTGATTTTCGAGAAGTTGCCAAAACCGAGGTGATCCGCTGATAACGCCCCAGGTCGCCGAGG # Right flank : CTTCCCTCGATCGCGGCAAGCCCGCCCTCAGAGAAAGGTCCGCCCCTCGCCCCGATACGTCGGCACCGTCCGGACCACCCGCTCGCCGTCGATGAGGTGCAGCCGGTCGAAGCGCTCGCACAGTTCGCCCGCCTTGGCGTGCCGGAACCACACGCGGTCGCCGATGCGCAGGGTGTCGGCGGTGGGGCCGACGACCGGGGTCTGCACCTCGCCGGCGCCTTCGGCGGCCGTCAGGTGGAGGCCGCTCGGGAGCCAGGGGCGGGGAAGGCGGTCGGGGGCGGCGGTGCCGGAGGCGAGGTAGCCGCCGCCGAGGACGGTGGCGGTACCGGGGCCGGGGCGGCGTACGACGGGGAGGGCGAAGGCGGCGGCGGGGACCGGGGTGAAGGCGCGGTAGCCGTCGAAGAGGGTGGGGGCGTACAGGCCGGAGCCCGCGGCGACTTCGGTGAGGGCGCGTTCGCGGGCGGCGGTGCCGAGGTTGCCGGTGCCGCCGCCGTTGACGT # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.18, 8:1, 9:0.39, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGCGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2304-1848 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVZC01000010.1 Allonocardiopsis opalescens strain DSM 45601 Ga0181037_110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2303 29 100.0 32 ............................. GAAGCGCCACGGGGTGCCCGCGTTCGGGCCGT 2242 29 96.6 32 ............................G GCGGAGACCCCGGCGCGCTGGCCACCCTGTCC 2181 29 100.0 32 ............................. CATTACACGAAGCGGCAGCCGCTTCTACGTGC 2120 29 100.0 32 ............................. GCCAGTACCGCCAGGTCGCCATGATGGCCGGC 2059 29 100.0 32 ............................. GGATGCCCACCTGCGAGGTCGGACAGCAGCCC 1998 29 100.0 32 ............................. TGGGCGACGGCGGTGCCGCGGCATCGGTGGAC 1937 29 96.6 32 ............................G CCATACCAGGGCACATCAGCACTCGCTAGGTG 1876 29 93.1 0 ..............C...........T.. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGAGCCCCGCGCATGCGGGGGTGGACCC # Left flank : GTCACCCTCAAACGCGACGGGCGCCCGCAGCTGTCTAACGTCTCCCACACCTACGACCCCGCCACCGGGGTCATCCGGGTGTCCATCACCGACGGACGCGCCAAGACCGCCAACCTGCGCCGCGACCCGCGCGCCAGCTACCACGTCAGCCCGCCCGACATGGGCGGCTACGCCGTCGCCGAGGGGACCGCCGAACTCTCCCCGGTCGCCGCTGACCCCCACGACGCCACCGTCGAGGAACTGATCGAGCTCTACCGCGCCATCCAGGGCGAACACCCCGACTGGGACGACTACCGCGCCGCCATGGTCGCCGACCGGCGCCTCGTGCTGCGGCTGCCGGTGGACTATGTCTATGGCTGGGCGTGACGCGCGGCGCCCTGGCTCGGACCGCGACTGTTCGGGCGGATACGCATGGTGGCCGGTCGGTTACCGGGATCGCCGATTGGGTGCTGAAAACGATAAAGAATTGGTAACGCCCGACGAACGCCCAGGTCGGGAAG # Right flank : AGGCTGATGGTGCGCGCCCGCGAGTGGAGCCGGTCGTGATCGACCAGGAGCGCCGCCGAGTGTTCAGCAGCGCGTGTCAGCGATGATGTCGCGGGCGCCCTGGCCGAGCAGGGTGGTGGCGACGTGGGTGCCGAGTTCGGCGGCTCGGTCGGGGGTGTCGTGGCCGTGCGCGTGGACGAAGGTGCCGCCGTCGCGGGAGAACACCATGCCGATGAGGGAGAGCCGTCCGTCCGGGGTGGTGTGGCAGTGTCCGGCGATGGGGCTGTTGCAGTGGCCCTGCAGGAGGTGCAGCATCGTGCGCTCGGCGGTGACGTGGGTGCGCGTTTCGGGGTGGTCGATCGACCGGAGCAGTTCCGCGATGCCTTCGTCGGGTCGGCGGCACTGCACCCCGATGACGCCGCCGCCGACCGCCGGGCACATCTCCCCCACGTCGAGGCGCCGGCCGATGCGGTGGCCCATGCCGACCTTCTCCAGTCCGCACGCGGCCAGCACCAGCGCCT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCATGCGGGGGTGGACCC # Alternate repeat : GTGAGCCCCGCGCATGCGGGGGTGGACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //