Array 1 96112-95549 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAIMDU010000002.1 Streptococcus suis strain YTJ2 YTJ2_Scaffold2, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
     96111	    32	 100.0	    34	................................	TAATGCGTCAGCCATATCATCAGCTTCATGAATC 	
     96045	    32	 100.0	    34	................................	AGATTATCCTTAGAATACATTACACCGAAGATTA 	
     95979	    32	 100.0	    33	................................	TTTTATTATTATAGATACAAATGTAAAAGCCGA  	
     95914	    32	 100.0	    35	................................	TGCGTCGAATGCTTTGGTAAAAGTCCAACGACCTG	
     95847	    32	 100.0	    35	................................	AAAATCTCGTTTCCGAGCTTGAACACTAGTAGCTT	
     95780	    32	 100.0	    34	................................	TGCTGTGATAGAATTATCCGGATTTAGCGTTTCT 	
     95714	    32	 100.0	    35	................................	ATCATTACCAACACGCCCCACGATACTTTCAAGAA	
     95647	    32	 100.0	    34	................................	AAAGTGATAGTGCATGAGTCCCCTTCTGTCACGT 	
     95581	    32	  90.6	     0	...................A.......A...G	|                                  	T [95552]
==========	======	======	======	================================	===================================	==================
         9	    32	  99.0	    34	GTCGCACCCTACACGGGTGCGTGGATTGAAAT	                                   	       

# Left flank :   GCAAAGGCTATTCGAGGCGAGTTGGACAGTTATCCTCCCTTTATGATATAGGAGCCATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACAGTAGCTGGACGAAAGCGATTGAGACAAGTAGCCAAGCTGTGCGTTGACTTTGGTCAACGTGTGCAACATTCTGTCTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAGGTAAAGAATAAGTTGCTGGAAATCATTGATAAGGAACAGGATAGCATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGACGAGATACTAGTTATGATCCTGATCAAGGAGTCCTTCTGTTATAGATTATCTTTGCGAATCGGGCTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGCATATGAAAAAAAGTGAAAATAGGGTGAATTTATGGTATATTCTATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAAAGGCACT
# Right flank :  TGATACTCTAATAATCATTTCCTCAATAAAATCTTTTATCAGAGAATTCAGAGAAAAAATTTGATGATTCTTCTAATATTTTTGGTAATATTTTCTAATTTTTCTTCTCCTCTTTTTTAAATTTTCTTATAATAACTTACCCACTTCATGCTATAATAGTTATATGAGTTTTTAAAAGGAGCATGAAATGTCAAACTTAAAAGAGCAGGTTGGTATTAAGGCGGCGGAATTTGTAACGGATGGTATGGTTGTTGGTCTAGGGACTGGTTCTACAGCCTACTATTTCGTTAAAGAAATTGGCCGTCGGGTTGCGGAGGAGGGGTTACAAATTATTGGTGTAACGACCTCGCATGCTACGGCAGAGCATGCTGCGTCCCTTGGGATTCCACTAAAAAATATTGATGAAGTTGAGTATGTAGACTTAACGGTAGATGGGGCTGATGAAGTAGATGGAGCCTTTAATGGAATCAAAGGTGGTGGTGCAGCCTTATTAATGGAGA

# Questionable array : NO	 Score: 9.21
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCTACACGGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-6.70,-4.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.41   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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