Array 1 309784-311880 **** Predicted by CRISPRDetect 2.4 *** >NC_011653.1 Thermosipho africanus TCF52B, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 309784 30 100.0 39 .............................. CATATTTTTTAGATAAAATATCACGCATTAAGTCCCCCA 309853 30 100.0 37 .............................. TTGAATTCCTCGACACCCTCCTTTAAGATTTTCATTT 309920 30 100.0 44 .............................. TATACTTCTCTATGTTGTCATTATAGTTATAGCAATATCTCGTG 309994 30 100.0 42 .............................. ATTCAAATTCTTTCTTTAACATAATAACACCTCCATACATTT 310066 30 100.0 47 .............................. CTTAATTCTCAGCTTCGTGTTATATATTTCAATTTTCTTTTCCATAA 310143 30 100.0 34 .............................. ATAATAGGAGTAATAATATTAATCTCAAAATCTG 310207 30 100.0 38 .............................. TGTATAATGTAATTTCCTTTTTTAAAAACATAATTTCC 310275 30 100.0 44 .............................. GCTTTTCGATGAACTTTTCGAGTTGTTCGTAGCTGTGTATAATC 310349 30 100.0 38 .............................. CAATCACATCATAAATTTCACCATGGGTCTTAATTACT 310417 30 100.0 35 .............................. TCGATTACTTCTTTAATTAAGTTGTCAAGTTCGCC 310482 30 100.0 9 .............................. TAAATCAGT Deletion [310521] 310521 30 100.0 42 .............................. ATCCCGATGTCCCGGTCTTCTCTACTATCTTGTATGGATTTT 310593 30 100.0 38 .............................. TTCATTTTTGTATTATACATTTCAATTTCCTTTTTTAA 310661 30 100.0 41 .............................. ATCACAGAATAATCTGTTGTCGATCGCCACTATTTTAAATC 310732 30 100.0 42 .............................. GTGAATAAGTGTTTCTTCAAACTTTTCAAGACTAATGGTTTC 310804 30 100.0 42 .............................. CAAAAATGGCACTTGCAACACTTTCTCCTTTTAGTTTCCTCA 310876 30 100.0 41 .............................. CGCGTTTGCCGTACTCGTCTTTGTATACACCTAATCTATAA 310947 30 100.0 41 .............................. TGACTTCAGGTTCAAAGGCTTCCATTAAATCGTATATAATT 311018 30 100.0 41 .............................. GTACCTCCACAAGTGCACCATTCTCAATCTTGAAACTCCTC 311089 30 100.0 37 .............................. AACTTTTGGAATGTTACGTTGTATGGGACTGATAAAG 311156 30 100.0 42 .............................. CTCCCTTCATCAACTAAGTAAAAATAATTATCATTATCTAAA 311228 30 100.0 40 .............................. CATGATTTCGAAGTTTCAAAGTACCGCCTTCAAACCCAAA 311298 30 100.0 36 .............................. ACGTATGTACATAGAAGATGAGTTTATAGAAACAGT 311364 30 100.0 37 .............................. TTTTTGACGATTCCTCTAGCATTTTGTTGAATTCTTC 311431 30 100.0 43 .............................. CCGTCGTAAAAAAATCATCTGCTTTTACTACTTTTACACCATG 311504 30 100.0 37 .............................. ACAAATTCATATGTATCCATAATTACACCTTCACTTA 311571 30 100.0 38 .............................. ATGTTTCCGGCACTGGCTCTATGAGTCAACTAGGAAAC 311639 30 100.0 40 .............................. GGACTAGTTACTGCTCCTTGTGGCAAACGTCCTTTATATG 311709 30 100.0 43 .............................. GATTCTAAAACATAGTCGCTTTTTGTTGAACCAAAGAAATCGT 311782 30 100.0 39 .............................. GTACGAAACTGTCTCCAATTTGCAACGGGGATAATTGTT 311851 30 93.3 0 ............................TT | ========== ====== ====== ====== ============================== =============================================== ================== 31 30 99.8 39 GTTTAGAATCTACCTATGAGGAATGAAAAC # Left flank : AGTGCATCTACTTCCATTTTTTTAACCGATACGCCAAAAATAATATATAAATCTTGCTTTTATAATGTTTTCCCTTTATTTTCTTTTGACTTTCATAAACTATATTTTATTTTTTATCCGCTGCCAATTCTTGATCATAAAAGCAATTTTTTACCCAATTTCAAACTATCTTGGCTGGACTACTAAATAACATTAGAAAAATTATATTAATAAAATAACAATTTATTATTAACAATTAAAAATCACAAAAATATTTTAAGATAAAACGTCATGTTAACACTTTTGTAACCAATTTTGAAAAAAACTCTTTTTTACTAGTTTCCTGTTTTTATATTTGTAACTTTTATGTTAACAAATTAAAATTAGACAAATTTTTAGGAGATGTTTCCGAAGATAAAATTAAATGAAAGCTTATAAATACTACATTTAACTTACTGTTTACTTCCGCTCAAAGGTTTTGTTACTTTTTCTTGTTATATTTATTTATGAGGATAGTATAG # Right flank : TGCATAATGATGTTTACCATAATAATCTTCATCAACATAAGCGTTTAGACTCTATCGTTGAGGTTATTATAGATAAAACATTTATTTTCTTCACTTTATGAAATTTTATAGCTTAATATTATCTAAACAAACAAAAAAAGGAGGGATAACCTCCTTTTATTTTGTTACTTATTATTTATAACTTATAAATTAAATTTAGTTTTTAATTTATCGATTCCTGCAGAAAATCTAATGCTGCTTTTACAAAATATTATTTTTTAAATATTCTCCTAGTTTATTACTGCTCCCTCGTTTTATTTTTTCTTTTAAAAACAGCCCTAGAAATTTGCCTTTTCACTTTCTACTTATACTACTTATATCTGACAACCTTTTTTTACTTTCCTACAACATTCTATTTTATACTTTATACCATATTGAAAAACGAAGATTTAAATATTGAAAACAATAAGTCACTTTTTAAATCTACCATACCCCATAGAAGTTTTTGCACCTATTCCATA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 326883-329288 **** Predicted by CRISPRDetect 2.4 *** >NC_011653.1 Thermosipho africanus TCF52B, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 326883 30 100.0 37 .............................. ATATCAAATTCGCCAAGCCGCTGTTCCCAAATATTCC 326950 30 100.0 45 .............................. ATGATGACTATTAGTGCATACCTGATTATATTGGCGTCTATCTAC 327025 30 100.0 39 .............................. GAAACATTAGGTAATCGACAAGATGAACTGTTTATGGAA 327094 30 100.0 43 .............................. TACAAAGTTAGAATTTGACAAAAAAGGAATAAAAGAATTTGAA 327167 30 100.0 40 .............................. ACCTGAAAAGACACAGGAGGGAAAAATTCCTCATGAGCCA 327237 30 100.0 40 .............................. TGAGAATTGGTGTTCGAAGATATTTTAGCTATGAATATAC 327307 30 100.0 39 .............................. TCAAAAATTTTGAAAAACTGATGAATGAAGTAATTCAAC 327376 30 100.0 36 .............................. TATTCTAATTATCCAGGAGCTCGAGTTACAATTCAC 327442 30 100.0 40 .............................. TTCGACTTCGACTCCAAAAACCTTATTCGGATCTTTATTT 327512 30 100.0 40 .............................. CTCATTAAACAAAACAAAAAGAAAAAACTTACAAAAGGAA 327582 30 100.0 43 .............................. TAGGGCTCCCCGTGTGGGGGATGACCGAAAGGGACCTGGCAAT 327655 30 100.0 39 .............................. GCAAAAATGGGGGCCAATCACAGGCCCCTATTTTGTTGC 327724 30 100.0 34 .............................. AAACTAAAAATGGGCTCAAACGCCGCTTTTACGA 327788 30 100.0 42 .............................. AGTTTTTGGAAAAATAGTGCATGAGATGATAGCTAAACAATT 327860 30 100.0 42 .............................. TCTTGTTCTGGTTGAAGGAACACCGCAGACAAGAAAACATCA 327932 30 100.0 38 .............................. ATTTCAATGCCTATCCATCTTCTACCTAATTGTTCTGC 328000 30 100.0 35 .............................. GAAATATGCAGAAATTGAGAAAGTAGATTGGAAAC 328065 30 100.0 43 .............................. GAAAAATTCCTCATGAGCCACAGTATCCTGTGTCTGAGTAGGG 328138 30 100.0 38 .............................. ATTTCAATGCCTATCCATCTTCTACCTAATTGTTCTGC 328206 30 100.0 44 .............................. CTAAACATACTACAGCGGAGCAGGTAATAAACTGTTATATCTAA 328280 30 96.7 45 ................C............. CGCAATATTTAGAGCTTTAATGTTTCAAAAATGGCACCAATACAG 328355 30 100.0 46 .............................. CTTTAGAGCTTTAATGTTTCAAAAATGGCACCAATACAGTGGTCTT 328431 30 100.0 36 .............................. TAATGTTTCAAAAATGGCACCAATACAGTGGTCTTT 328497 30 100.0 41 .............................. TACAACTCAGACCCAGAAGCTGAGTGGATGTTAGATGAATA 328568 30 100.0 35 .............................. GGAAACTATAGAAGAAAAGTTTGTGGTTATAAAAC 328633 30 100.0 37 .............................. ATAATAATAATAGAAAACAGATTATTCTGTGATTTTC 328700 30 100.0 43 .............................. CAAAACTCCTCGGCAACAAAATTGTGTTTTCACTTGGAACAAC 328773 30 100.0 41 .............................. ATTTGAATATGATGTAGGAATCGAAAAAGGATTAATCACCG 328844 30 100.0 38 .............................. ATTCTTCTGTGATTTTCCAATCGCGGATTTTGGTCACG 328912 30 100.0 41 .............................. GAGGAATTCAAAAATTTTCGAAATTTCGAAGACCTCGAACT 328983 30 100.0 36 .............................. TTGAAAAGGGGGTGATTACCGCAACGTTCGAGATAA 329049 30 100.0 44 .............................. TCGGTGGGTTTAGAAATGCCCAATGTGGGCAAAAACAAATAAGG 329123 30 100.0 39 .............................. GTATAACACAAAGATGAAAATTTCCAAGGAGGGTGTCGA 329192 30 100.0 37 .............................. AGTTTAAGAACTTTAGATTTTTTGAAGACCTCGAATT 329259 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 35 30 99.9 40 GTTTTCATTCCTCATAGGTAGATTCTAAAC # Left flank : TTATACGTCCTTACATAAATATCTATCAAATAATCATCTTCGCTTTTAATAATACTTCTTAGTTTCACTAATCTTTCGGCAGGAACTTCAGGCTCAACTACGTAATTGTATATTGGAGCAATAATACCAAATACAAAACCACCTAAAAATGGCCAAAATTTATTAACATCTTCATTTGCATGAACTCTAGCTAAAGATTCCACTTGTGATGGTGTTGTTAAAAAGTTTTGCTCACCAAAAGAGATTATAATAAAAATACTTATTAAAAGAACTATAAAAAATTTTCTCACAAAAATCCCTCCTTTAAAATTTGCTTTACACTTATAATACGATTTAAACCTTTAAAATCTGACATAAAAAATTGGAGCAATTAATTGCTCCAATTTAAAAAATATAATTTATCCATATCAATTTGTTAAATCATGATTTATTAATAATCTTCTTATATTTTTTCAAATAAGTTCTAAATATAAAATTATATTTTTTAAATAAATAATACA # Right flank : CCCTATAACTATTCTCATAAATAAATATAACAAGAAAAAGTAACAAAACCTTTGAGCGGAAGTAAACGGTAAGTTAAATCTAGAATTTATGAGCTTTTATTTAATTTTATCTTCGAAAACATCCCCTTGAAATTTGTCTAATTTTAGTCCGTTAACATAAATGTTACATCTATTATATTATAGAAAAAGTAAAAATAAGCTTTTTTTGAATCTGGTTAAAAGTATGTTAAAAAGATTTTCTTTCATAGAATTACTTCAACACTTTTTTATAGTTAAATTTAAATTTCTTTTTAGTTAATTTTTTTATCTTATTTTCAAACAACTACAAAAGTGAATACACCCGAGTCAATATAAAAAATTATCTATCAATTAATCCTATCATTTTATGATAAGTTGTAAGTGCTTCTATTCTGCTAACTGCTATCCTAGTAATATATATGTCATCTGTTATTTTATCATCTTCATATTAATCTTCTGTTTTAACTTTTCTATATACCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCATTCCTCATAGGTAGATTCTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [91.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 3 368612-371819 **** Predicted by CRISPRDetect 2.4 *** >NC_011653.1 Thermosipho africanus TCF52B, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 368612 30 100.0 32 .............................. ACAAGATCATCATCAATATCAACTTTCTTTAA Deletion [368674] 368674 30 100.0 36 .............................. TATGCCAATTTTCATCTTTCCGCCCCCTTTTCATTC 368740 30 100.0 41 .............................. CTCCAAGATATATTTGTTTCATTTTATCACCTCATTATAAA 368811 30 100.0 43 .............................. CCAATTCGAGGTATTCAAAAAAATCACAATTTTTGAACTCCTC 368884 30 100.0 46 .............................. ACTAGTATTCTGAACCTTTTTGTTACTATACCTTTCATGTTTTCTC 368960 30 100.0 39 .............................. TGAAAGAACTATTGTTCTTTTATCTAGGAGTTTTGCAAA 369029 30 100.0 44 .............................. TAGTAGACTGTCATTCCGTCTACTTGTTCTTGATGAATATAAGA 369103 30 100.0 43 .............................. GATTAGTGTTAAAGTGTAAATATTATTATCGCACAAATTATAT 369176 30 100.0 45 .............................. TAGAAAAGCACCACCTACAAGCAACCAAAAGCCAAATTTGTTTCC 369251 30 100.0 40 .............................. AGCTTCCGGGTCTGAGTTGTAGTCTTGGATAAATTGTTTA 369321 30 100.0 37 .............................. TCAATATACTTCTCTATGTTGTCGTCATTATAGTTAT 369388 30 100.0 40 .............................. TCTTTTATATTCTCTTCTAAAATTTTCATCTTTGTGTTAA 369458 30 100.0 46 .............................. TTTGCAAAGAGATCGCCAGCATCTCCAAAGCTGGCAACCACGACCC 369534 30 100.0 46 .............................. ATATATTGTAGTAATGGAAACACAGATTGTCCTTCAAAAAACGATA 369610 30 100.0 41 .............................. TGTGTCATACAATCTGGAAACCATCACATACATAATTACAC 369681 30 100.0 39 .............................. GAAACCATCACATACATAATCACACCATCCTTTCTTTTG 369750 30 100.0 36 .............................. CGGATTGTCGCAGAACAAAAGTGTTGGTAAAGTAAT 369816 30 100.0 38 .............................. TTTTGAATCTCTTTGTCAGTTTACCTTTCATGTTTTCT 369884 30 100.0 42 .............................. ACCATAATACCCCTCCTTATTTTATTTTTTCGGAACCTTTTA 369956 30 100.0 43 .............................. ATACTTGCATCTCTCTGTTTCGATTGTTACTTGTAAATAATAT 370029 30 100.0 41 .............................. GGCTCATTTTTGTGTTACGCAACGAAAATGTAGTTGTCACC 370100 30 100.0 42 .............................. CACTCAGCCTCCGGGTCTGTGTTGTAATCTTGAATAAATTTT 370172 30 100.0 41 .............................. GAATTCAATTGTTTTGTTTCCAATTTTTGCAAAGAGATCGC 370243 30 100.0 39 .............................. CATTTATTTCATGGCATATTTTCGATGAAATATATAACA 370312 30 100.0 43 .............................. CATTATATATGTGTGAAATATGCTGAGCGTTACCATTAATTCC 370385 30 100.0 43 .............................. TCCAAGTTCGAGGTCTTCAAAATCTCTGAATTCCTTGAACTCC 370458 30 100.0 43 .............................. AAGTTTTCTTGTGGTCTACAAATAATTTCAAGCTTCATACTTC 370531 30 100.0 44 .............................. GCAACTTTGATTCCAAATTCCAAGTATTCAAAATAGTTACAATT 370605 30 100.0 35 .............................. TTTTTGTTCCATCCTTATGTAAAATTTCATACTTC 370670 30 100.0 39 .............................. AAAAAAAGCGGTGGGTCAAAACCCACCGCTTATTAAAAA 370739 30 100.0 43 .............................. TTCTCTTCTTCTTCTTGCCTTGTCAACATATCTAATTTTTCTT 370812 30 100.0 34 .............................. AGTCTTGCATGGCTTTTCGCAATTGTTCTACGAC 370876 30 100.0 36 .............................. TAAGCTGAATAAGCCTACTTTTGTCATTGTCCTATT 370942 30 100.0 39 .............................. TTATTCCATAGTCTTCCGATACTGTATCGATACTGTATC 371011 30 100.0 40 .............................. CTGCATTCTGTACTAAACCTATAAGTTCAAAAATAGACGT 371081 30 100.0 38 .............................. AACTGTTTTCGCGATTAACTTTGACCTCTCATCAGACG 371149 30 100.0 42 .............................. GCCAGAACTAAGTTTTTGACGTTCTCCCAGGGAGCCAACCAT 371221 30 100.0 43 .............................. ACTTTATAAGATTCATAAATCTTTTTACTCATAATTTCTCCTC 371294 30 100.0 41 .............................. GAGGTACTCCTATAGTGATTCCAAGAAGAGGCAAAACAACA 371365 30 100.0 38 .............................. ACTAGCAAAGCCAAAACGCCAGTCGAAATTTAGAAAAA 371433 30 100.0 41 .............................. GAGGTACTCCTATAGTGATTCCAAGAAGAGGCAAAACAACA 371504 30 100.0 38 .............................. ACTAGCAAAGCCAAAACGCCAGTCGAAATTTAGAAAAA 371572 30 100.0 45 .............................. TTGGTCGGATCCAAAACAAAAATCTTTCCCTTTCGACATTTTTTT 371647 30 100.0 43 .............................. TCATCATCTGCGATTATCGCTAGAACTAAATTCCTTATGCACT 371720 30 100.0 40 .............................. GTCATCATCTGCGATTATTGCCAAAACTAGGTTCTGGATA 371790 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 46 30 100.0 41 GTTTAGAATCTACCTATGAGGAATGAAAAC # Left flank : CACTCATTTAGATTTATCAAAGACAATGTTAGAAAATTTATTGAGTAATTTTTGTTGTTAAACAATATTGAAGTGAATATTATTGGGCTACACCTCCTTGTTGGTGATGTTTAGTACAAAAACAATTTTAACAAGTGTAGCCCTTTTTTTATATTCTAATTTAACCTATTTTTTACTTTGGCCAGGGTCTCCGAAAAACAAAAAAATTAACTAAAAGGAAATTTAAAATTAACTATAAAAAATTTTTGATGTTATTCTAAGAAAGAAAATTTTTTAACACATTTTTAACCAAATTCAAAAAAGTCCATTTTTACTAAATCTATAATATAGCATATGTAACATTTATGTTAATAGACTGAAATTAGACAAATTTTTAGGAGATGTTTCCGAAAATAAAGTTAAATAAGAGCTCATAAATTCTAGATTTAACTCACCGTTTACTTCCACTCAAAGGTTTTGTTACTTTTTTTTGTTATATTTATTTATGAGGATAGTTATAG # Right flank : CTGCATAGTCCAAATTTTTCAAACTATTCTCACTTTTTTTGAAATCTAGTTATTGAAATTCCTGTATTGATTCTCACTGAAAAGTTTCATTAAAAATTTCTATTAAAAATAAATGCTCCATTCTTGCACTATGACAAGAATGGAGCATTCTTTTTGTTTTTTAATAATTTATATTTACATAGCTATAAACTTTCAACGCTTTCAACTGGATAATCAATTTCAGATAATTTTGCTTTTACATTTTCTAGGTTTTCGGTTTCAATTTCAACAGTTTTACTTTCTAATTTAACTTCAAAGTTTTTTTCACCTAGCTCTTCTAATGCTTTTGTTATTCTCATAACACAATGTTTACAAGACATATCTGGTACTTTCAAAATAAATTTACCCATAAAAATCCCTCCTTTTTAAAATCTTCCTTTCATTATTAATTCTTTCTTTCTTTTGTACTCTTCTTCTGTTATTTCACCTTTTGCAAGTTTTTCATTTAATATTTTTAAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 4 501658-499002 **** Predicted by CRISPRDetect 2.4 *** >NC_011653.1 Thermosipho africanus TCF52B, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 501657 30 100.0 40 .............................. AATTCAATTGTTTTTCTGTTTCTTATTTTGGCAAACAGGT 501587 30 100.0 38 .............................. AGAACTTCTTGAATGAACCCCTCAAACTGCTCTAGTAA 501519 30 100.0 36 .............................. TGTTATTTCTAGATAGTCCTCTGCTTCTTTTAAAAA 501453 30 100.0 44 .............................. GGTCTGAGTTGTAATCTTTTACAAATTGTTCGATATATTTCTCA 501379 30 100.0 41 .............................. TTTGTTTCTCGCCCGCTCCCGTCCTCTTGGTTAGTTTCATA 501308 30 100.0 43 .............................. TTCATTTTCGTGTTATACAATGTAGTAACTGACACCATAATTG 501235 30 100.0 38 .............................. CCTTGGTAATTTTGTCTAATCCTGTTACTTCGAACGTT 501167 30 100.0 43 .............................. GAAAATTACATCTTGAATTATACCCGTGTATTCAATAAATTCA 501094 30 100.0 38 .............................. GAATTAATACTTATTCTTTTGCCTATATAGTAATTCTT 501026 30 100.0 40 .............................. GAGTAAACACAATTGTGTTTCTGCCACGTTTTGCATATAA 500956 30 100.0 39 .............................. CAACTCCTTAACCCAAAAATACTTAAATTTATAACCATG 500887 30 100.0 43 .............................. TAAATAATAATATCTCATAAAAGCTGTTGCATCTAAAAAAGGA 500814 30 100.0 44 .............................. AACCAATAGCTTGTGGTAAATTTTCCATCGTAACGATGTCTATT 500740 30 100.0 39 .............................. AACTCCATTCTCTTACAACTAATGATGTTCGCCATTTTG 500671 30 100.0 41 .............................. TAAAACCTATTTAAGGAGCCATTATACCTACTCTGAAAAAC 500600 30 100.0 46 .............................. TAATGTTTCCAATGTGCCCCAAAATAATAATTTTGGAATAACTCGG 500524 30 100.0 39 .............................. TTGACTAAATCAAATCTTTTTACTAACATCATAATATCC 500455 30 100.0 43 .............................. ATTGTTTGCTTATCTCTTTTTCTTGCAATAGCTTCATATACTG 500382 30 100.0 43 .............................. ATCCACTTGTTCAAATTAAAATCTTTAACTGCATCTCTTAAAT 500309 30 100.0 44 .............................. TCCTCCTCAGGCGCCCTACTTTCGCCACCTACCTATTCACTTTT 500235 30 100.0 44 .............................. AACAGTGTCAGAAGCCGAAAAAAGCGCTATTTTGAATTCAATAT 500161 30 100.0 42 .............................. ACACCAATTCGCACAAGACATGTTATAGGACAAATTACAGGC 500089 30 100.0 38 .............................. TCATTTCCTATTTCTCCAAACTCGCTTAATAGTTGCCA 500021 30 100.0 42 .............................. TTATTTAAATCAAAATGTGATATAATTATGTAAAAAAGGTCC 499949 30 100.0 42 .............................. TTTGCAGCCTCGTAAAATTCGTTTCTCCAGCCATCAGTCCAG 499877 30 100.0 39 .............................. CCAAGGTTCTTTTGGTCATCTCCCTTCCCTACTCAGACA 499808 30 100.0 42 .............................. TTACTATAAAGGGCTCCAGGGCCCTTTATTTTGTATATAACC 499736 30 100.0 39 .............................. ACATCCTATCGGCAAGGAACTGTATAATCGTTTAAAAGA 499667 30 100.0 37 .............................. GAATGTATGCGTCTGTCCAGATTGATGGTTTGTATTC 499600 30 100.0 44 .............................. AATAGTTGCATGGAACAACAAATATTTCGTCTTTTGTAACTATA 499526 30 100.0 45 .............................. GTATGCGGGTTCCTCAGTGATATTTAACACAATTGTAAGAATGGA 499451 30 100.0 38 .............................. CTTTTTAACTTTTATGTAAGGTAATGCATTTAATAAAG 499383 30 100.0 43 .............................. ACAAAAAAGGTGCTCCAGACGCAGGTACAAATAAAAAACCCGC 499310 30 100.0 39 .............................. ATAATGTGCGGAAGGCGTCGGTTGGTGGGCCAGTTCGGA 499241 30 100.0 42 .............................. TTGAATCTCCTACCAAAAACGATTTTGCAGGCGTCTGCAAAA 499169 30 96.7 39 .............T................ ATAATGTGCGGAAGGCGCCGGTTGGTGGGCCAGTTCGGA 499100 30 96.7 39 ...................T.......... ATTTCTTTGAACAGTACTTTTTCAAAATATGTCGTTTTT 499031 30 76.7 0 .........T.......T..C....TGTT. | ========== ====== ====== ====== ============================== ============================================== ================== 38 30 99.2 41 GTTTAGAATCTACCTATGAGGAATGAAAAC # Left flank : GATTTATCAAAGACAAGAATAGATATTTTGTTGAGTAATTTTTGTGGTAAAATAATATTGAAGTGGATATTGTTGGGCTACCCCTCCATGTGTTAGATAACATTTGGTATAAAATAATTTTAGCAGGTGTAGCCCTTTTTTATATTCTAATTTAACCTATTTTTTACTTTGGCCAGGGTCTACTAAATAACATTAGAAAAATAATATTAACTAAATAAAAAATTATTATTAACAATCAAAAATCAAAAAAATATTTTAAGATAAAATGCCACATTAACACTTTTGTAACTAATTTCGTAAAAACTTCTTTTTTTCTAGCTTCTTATTTTGATATTTGTAATATTTATGTTAACAGACTGAAATTGGACAAATTTTTAGGGGATGTTTTCGAAGATAAAATTAAATAAAAGCTCATAAATTCTAGATTTAACTTACCGTTTACTTCCACTCAAAGGTTTTGTTACTTTTTCTTGTTATATTTATTTATGAGAATAGTTATA # Right flank : ATAATAATTAATAATTTACTTCTCCAACTTTGAAGTTTAAAATCATATGCATAATTAAAATCTACTGCCACAATTAACTATCTTGTAGGATTTTCATTTATTTAAGATTTATTTCTAGTGTATTGAAAAAAATTCTCCTGTTTTATACAATTTTTTTCTTATTTCATTTTTAGAATTCTTAATTTTATTAATCAATAAGTAAAATCTTAATAAAAAGTAATCCATAAGTCTTTTTAATAATGTATTTACAAATTTAAGTTATTTATATGGTTTAACTTTCTGTTTATAATAAATTTGATATTAAGAAAAACATTATTATTCTCAAATTCATTCGATTTACGATATAATTTTTTAATTACTTATTTTTATTGTAATTTAACAAAAAGTTACTAAACAAAAAATGTTATTGTAACATTATTTGTTTTGTGCTATAATTCTATAAAGGGGTGATTAAATTAAAATATAAGGAATTATTGAAGACATATGAGGAGTATTTTTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 5 754424-752131 **** Predicted by CRISPRDetect 2.4 *** >NC_011653.1 Thermosipho africanus TCF52B, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 754423 30 100.0 46 .............................. TGATTTTCCAATCACAGAATAATCTGTTGTCGATTATTATTATTCG 754347 30 100.0 38 .............................. TTTTTTCCATTTCGTTGTTGAATTTCACGATAATCTTT 754279 30 100.0 43 .............................. GTGTGCTTTTACTAACGCCATGTATTAGCTTTAAAGGTAATGT 754206 30 100.0 42 .............................. TTGAACGCTTTTGCATATTCCCATACCAAGTTGTAATGATGC 754134 30 100.0 42 .............................. TGTTAACGGTTCTATAACAGTATTAATTGCACTTCGTAAATC 754062 30 100.0 38 .............................. TATTAGCAGCACTTGCAGCAGCTCCAGGCATTGCATCG 753994 30 100.0 37 .............................. TATTAATAATCCTCTTCTTCATCGTCATAGCCTTCGT 753927 30 100.0 44 .............................. TTATCTACCTTTTTTGATTCGTAAATTTTCCTCATAATTTCTCC 753853 30 100.0 44 .............................. TTGTATTTCTTGGTTTCAAAAACCCCCCAAATCTCTTTACCTTT 753779 30 100.0 38 .............................. CAAGTAGTCTACACATTCTATCAGCTCCTTTCTTTTCT 753711 30 100.0 37 .............................. GGGCATCAAGGATTTTTTCGTTGAATTGTTTTATTTC 753644 30 100.0 41 .............................. ACACTCCCAGGGAGCCCCCCATACATCTGGGTCCCTGATTA 753573 30 100.0 39 .............................. TGAATGAATTTTCTGATGTATTCCTCAAGCGGGATATTG 753504 30 100.0 44 .............................. TTTAATTTTGTTGTTTATCATTTGCCTCAATTCTTTTTCGGTTA 753430 30 100.0 37 .............................. CCAATGCTTTTTGCCATGTCTGTAGCGATTCTTTTTC 753363 30 100.0 38 .............................. CATCGTTGTCTTCCTCATCGTCGTCATCTGCGATTATT 753295 30 100.0 42 .............................. AAATTGTGCAAATCTAAATAAAATGTTACTTCCCTCTTTATC 753223 30 100.0 43 .............................. GCAAAGGCTCTCGGATGCCTCCAATACGCGAAAATCGCGTCTT 753150 30 100.0 37 .............................. TTGCTTTTGCTCATTCTACCCCAGAACCAACTACAAC 753083 30 100.0 34 .............................. TTCTTGGACCTTGGTACACTTGCGCGTCTAATTC 753019 30 100.0 43 .............................. TTGTGGGTCTGGCAATCCTTGCACAGACCCGAATTTAGTTCGA 752946 30 100.0 44 .............................. ATTTTATCCCAGACCCGATTTGGCCAGCCTGGGGACTTAATACA 752872 30 100.0 39 .............................. CTCTTAATATAGACGGGCTTTAAAGGGGAGCCGTCTACA 752803 30 100.0 47 .............................. TTCAGGTTCAAGCAGGAGCCCGCTTCGAACCCTGGTAATATTCACTT 752726 30 100.0 45 .............................. GAAAACACCGAGGAATTCAATGATCCAGCAAGAGACATAAAACAC 752651 30 100.0 39 .............................. ACCACTATTAGAAGGAATAGCACATGAGAAGAAAAAACA 752582 30 100.0 39 .............................. TGTGTTTTGTAATTTATCATGTAACTTTAACATACCTTC 752513 30 96.7 41 .........A.................... GTGTTCTTCCATCCTTGCCCACAATATTGCTTGTTGTTGCG 752442 30 100.0 44 .............................. CCATACTTCTTTTCAATTTCTTTTTTAATATTTCTCATTTGCAT 752368 30 100.0 35 .............................. ATTTACCAGTGAGTTGGGCATATAACACAGGTTCA 752303 30 100.0 45 .............................. ATGTCCTCTTGTTTTGACAAAAACCGGTTTTAATGCCTCTCCAGA 752228 28 90.0 39 ....................A..--..... ACAATTTACATCACCGGCCTTTCAATGGAAGGATTTGGT 752161 30 86.7 0 ...................AA...A....T | T [752133] ========== ====== ====== ====== ============================== =============================================== ================== 33 30 99.2 41 GTTTAGAATCTACCTATGAGGAATGAAAAC # Left flank : AAAATATCAAAGGAGCTTCCAAACAGCAGATTCATAATCGTCGGAGATGGAACATTGAGGGATAAGATACTGAAAGAGATGGAAGGGCTCGATGTTGTTTTTGCTGGAAGAGTGCCACAGGTAAAAGTTGCAAGATACATGAATGCCATGGATGTGATGGTACTTCCAAGCAGAAATGAGGGATGGCCGTGCGTTGTGCTGGAAGCCCAGGCCTGTGGAACATGCGTGATAGGAAGCAGCAACGGAGGAATACCTGAAGCAATAGGATTTGATGAGTACGTGGTGGAAGAGGGAGAGAGTTTTGAAGACAGGTTTGCAAAGAGAGTCGTTGAAGTTCTGAAAAAGGGTTATAATAAAAATATATTGATAGAGAGAGCAAAAAGTTTTAATTGGGAAAAAACTGTGAAAAGGGAAATAGAAGTTTATTATCAAGCACCCTGGCCAATGTAACAGAGAAGGTGGAAAGAGTAAGGGTAGAAAAAAGGGCTACACCTCAGTAA # Right flank : TATTTCTTTAAACGAGTATTTGTTTTTGATATAGTTTTCAAAAAATTTATATTTTTTAAATTGTTTAAAAGGTTCAAGAATATGTAGATCAAAGACCGGTTTATTTTTCACTATTTGTAATGCAATATAAAGGATAGGAATTGTCGAAATTTAATATGTGGAAGATTCTGGATAAATCAAAAAATGAAGAGTCAAGTCTTCAAAGATAAAATACAAAATCATATTCTTACAATTTAATATAAAAAAAACATGGCTCGTCTAGAGCCATGTTTTTTTGAATGGAATAAATTAAAACTTTATTACTCTTTCGCTTTCCTTTACTCGTCCAACTACTTTTCCAGGAAGTTCATCTGTTTCTGAGACATATAACAAACCATATCCCATGTTAAAGGTATTAATAGCTTCGTCAAATTCTACGTATTTTAAAATCCAATCTACAAATTCCTTTTTTTCAATATTTATTTCATATCCTAAATTTCCAAGCAACCTTCTCAACGCTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 6 763252-763826 **** Predicted by CRISPRDetect 2.4 *** >NC_011653.1 Thermosipho africanus TCF52B, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 763252 30 100.0 37 .............................. TTGTTGTCCTTGAACGACAGGATCGAATAGAGCTTGA 763319 30 100.0 39 .............................. CAGTAAAGAGCACGCAGAAGAAGTAATTATTATACACAG 763388 30 100.0 39 .............................. CACTAAAAGCATTGCTAAGGATTATGCAGACTATGACGA 763457 30 100.0 40 .............................. ATTTATGATGTAATTGACGGTACTTCTTCCATAAGTAAAG 763527 30 100.0 37 .............................. ATCATTAATACCAAAATGAAGATAAAGGAGGGACTCG 763594 30 100.0 37 .............................. CTTTACCCAGTTGAGAAGGTGAATTATGCTGATGATT 763661 30 100.0 36 .............................. TTATTCGAGAAATTGGGAACCACATTATGTACCAAT 763727 30 100.0 40 .............................. AGGAAGAAGTGATAGTAATACACACCAAAGACCAACTAAA 763797 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 9 30 100.0 38 GTTTTCATTCCTCATAGGTAGATTCTAAAC # Left flank : TCTTTTCCATTTTCTTTTACTATTTTTTCAACCTTAACTTTTATCTGTTTTATCTTTTCATAGTATATCCTTATGTATTGAATAGTCTTTTTAGCCTTTTCAGCGAACCCCTTTGGGGTTAGAATATATTTAAAGGTTTTTTTATTCAACTTTTCTAATTTAATTAAACCTTTTCGCACAAATTTCTTCAACAACAAATTTACAAGTCCAAGCGAAAGTCCTGTTCTTTTGGCAATTTCTCTTTGAGTTATCCCTGGATTTTCATAAATGATCTCAAGTAATTTTATCTTATTATCTTCCATATTTTATCACCATTGTTCAATTTTTGAACGATAATTATATTATCATTCTGTGTAGTTGAATGTCAAGAACCTATTCAACACAAAAACCAATTGTTAATGAATCTAAAGAACTTAGATAGTAAGAATCACAATCAATTTGCATATCTATAAATTATTATTTCGCCTTGGCTAATGTAAACGACGAAATAGGTAGAAAGA # Right flank : CCTATAAATATTCACATAAATAAATATAACAAAGAAAAGTAACAAAACCTTTGAGCGGAAGTAAACTGTAAGTTAAATATAGAATTTATAAGCCTTCACGATCATTCATACTTAAAAACATCTCCTAAAAAATCATCTAATTTTGAATTATTAACACAAACGTTACAAATACCGTAATAATAAATTAGTAAAAAAGGAACTTTTTGACATTGATTACAATAATGTTAAGACACTCTTCTGTTTTAGACCCAGCAACTATAATTTTATTAGTTAATATTAAGTTTCTATTTAGTTAACAGATTGTTTTCAGAGGCATTTTCGATATCTAGAGTTACAGCTTGGTCAATGTAAAAATTATTTTTCAATCAATCTAATCATCTTAGGATGAACAGAGAGTGTGTCTATTAATATCGTTAACTGCTGCCCTAGTAACATATATGTAATCTGCGCCTTTAGCTTCCTTTCATTCATTCCTCTCATCTTTATCCTCTATTTTTGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCATTCCTCATAGGTAGATTCTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 7 885815-884384 **** Predicted by CRISPRDetect 2.4 *** >NC_011653.1 Thermosipho africanus TCF52B, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 885814 30 100.0 38 .............................. ACTACCTTATTAGCAGTTATAGTTATGTTATCGAATTC 885746 30 100.0 36 .............................. TTTTGTTTCTATATCTAATTGTATTTAATATTATTA 885680 30 100.0 38 .............................. TTATACAATGTTTTTTTACAGCATACGTTAAGCTAATG 885612 30 100.0 37 .............................. TTGTGAAACTTGAACAAGAAAGTTAAATTTGGTGGTG 885545 30 100.0 38 .............................. TTAGATAAAACTGTTTTAGCATGCCAAAAAAATCTCCT 885477 30 100.0 37 .............................. CCGTTATTTGAAGAGGTGTGAAGTGTGGCAGAGATTA 885410 30 100.0 35 .............................. TAGAAATTGAAACAGGCAACCTACAAGAATTAATT 885345 30 100.0 38 .............................. GTTAATCTTCGGGAAAATCGCTAATAATATTGAGAAAT 885277 30 100.0 35 .............................. TTACAGGAACATTTATAATTGCGACATCGTTCCAA 885212 30 100.0 36 .............................. TCGTTTTCTAATGTACCTAACCATTCTTCCCAATCA 885146 30 100.0 37 .............................. TGGGATATAAAAACCTTTTTTGTAGCATCATAATAAA 885079 30 100.0 36 .............................. TACTACAGACCCACGTCCTAAATTTTCAGGTGGTTG 885013 30 100.0 37 .............................. GAATTATTTCTAGTTAATTTTTCTAATACTAAAACTA 884946 30 100.0 36 .............................. GGGTCTAAATATTTTACTTCTTTAACAGTAAATCTA 884880 30 100.0 36 .............................. GCCTTTATACGATACTTAATATGCCCATATATCTGA 884814 30 100.0 36 .............................. TTGTTGCTGCGAGTCCTAAAACAAACACTTGTAATA 884748 30 100.0 37 .............................. AAATGCTTAATGCCTTTTTCTTATCACCTCCAAAATA 884681 30 100.0 38 .............................. CTTGCTTTTCGACTCCGGAGAGCACTGCTGGAATTTCC 884613 30 100.0 35 .............................. TCCATACCTCTAAACAGTATCTCGCTGCCATTTGG 884548 30 100.0 38 .............................. CGAGACACAGCATTCTGTATCCGAGTAGGGAAGGGTGA 884480 30 100.0 37 .............................. TAAAATAATCTAATTTTATCTGCGTATATCCATATGT 884413 30 96.7 0 .......................A...... | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 99.8 37 GTTTGTACCTTACCTTGCAGGAATTGAAAT # Left flank : TTTTGTACCTTATACTAGCCATTTAGAATTATTTATCAGTTTATCTAATAAGTTTATGCTTAATATTTTCAATCTAAATTTATTTTTTGTTTGATTAAAAGATAAGTGTATAATCCTTAATTGATTGAGAATTGATTGAATTCAAGAATGATAAAAACAAGAATAGTCATGACATTTTTTAGACATATTCTTTTACAATTTTTAAAAAGCGTCTCTCCTTTTTGCGTTCTAGAATAAAATAATTTTTTTACTTTAACTAAAGGCAAAATTTTTAATATAATAAATTTTTAAAAAAGTATAAAAAAGAAGAAACAAAATTTTTATAGTTAAATTCAGTCGATGTGCAGTAGTGTAAAAAGTCCTGGAGATCGACTGAAAAAAATAAAAAAATTATGTAACTTTAAAATATATTATGTTAATATTGTTTATTATTTATTATGACTTTTTCAAAAAGGTTGCAAAAAGTAATAATATGTAATATAATTATAACGTAATATATG # Right flank : TTATTTTACAATTATGCAAGTTATGCTTGTAAACTTATCTTTATTTCAAAAAGTTTAAGTAATATATATCCTATGAGTGGAGGTTACTTCATGATAAAAGAACTAAAGGTTAAGTTTAAAACTCTCAGCCCCTTATGGACAGGAAACTATAGAGGAATAACTAATGAAATAAGGCCTTCAAGCTTAATTGGCTCTTTAAGGTTTTGGTTGGATATTATTTGTTATTTTTCTGGTTTACAAATCAATGATTTAGGAAGTTTTGATCCAGAAAAATTTCAAAACTTTATTTTAAAAGAGGGGACTGATTTTGAATCTTTGAACAAAATTTTTTCTGAATTTAGACTAAGTTTATCTTCCAAAATTTTTGGTTGTAATAAGTGGGAAGGATGGATTAGGATAAAAGAAATAAAACCAGTCGGGAAATATTGTTTTGGTAACTATTTAAATTTAGATAATAGTTATAGAAAACCGTATTTTTGGGGGACTTTTGAAGTTACTTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTACCTTACCTTGCAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 8 1184388-1182891 **** Predicted by CRISPRDetect 2.4 *** >NC_011653.1 Thermosipho africanus TCF52B, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1184387 30 100.0 37 .............................. GCTGATGCATGGGTAAAATTAATAACTTCTGGTGGTG 1184320 30 100.0 37 .............................. CATGGATATACGATGGAAGTGTCTTGAAGGGTTACTT 1184253 30 100.0 37 .............................. TAGCAATATCGCGGGGCGGAGTTGAGTGAAAGAACTA 1184186 30 100.0 37 .............................. GCATTCACAACGTTCTGTGCCATAATGTTACCTCCTT 1184119 30 100.0 35 .............................. CTCAAACTATACCATATGGAACCGTTTCCATAAAT 1184054 30 100.0 36 .............................. TTTTGTTGGCTATTTATCTTTTACGGAAGAACCATT 1183988 30 100.0 36 .............................. TACATGATGTCCTTGTATGCTTCAGGCGCTTCGTCA 1183922 30 100.0 37 .............................. CAGCAAACTCCTTCAATTGCCACTTCAACACTTCCTT 1183855 30 100.0 37 .............................. ACTTTATATTTGCCAGAGAAACTTAAAGTGTATCCGG 1183788 30 100.0 36 .............................. TATATTCTGCTGGTTTAATTGTACCATCTGTTTCTA 1183722 30 100.0 37 .............................. TTTCTTTTTCATCGCCTGTTGTTTCTAATGGGTTATA 1183655 30 100.0 35 .............................. CTTTTTGCTCTATTGAAACTTTGTTTTCAAGTTCG 1183590 30 100.0 36 .............................. CTGTTTTATACCTCCTTTTAGTTCTTCCAATTTCTT 1183524 30 100.0 37 .............................. ATTTCTGCTATCAGGTCTGAAGTTGTCTCAGATTTGC 1183457 30 100.0 39 .............................. ATTGAAAGAACAATAGAATACATGACCGCACAACTTCTT 1183388 30 100.0 37 .............................. ATAAATGAATAGGAACATCTATCTGTTTCGATTTTTA 1183321 30 100.0 37 .............................. AATTTTTGTTGCATTAATAGTTAGTGAGAGCGGATTT 1183254 30 100.0 37 .............................. AAGTTGTTTTGCTTCAATAATTCATTTAGTCTATTCG 1183187 30 100.0 36 .............................. CTTTGTTTTTAAAATTAGAATAAGTAGTAAAATTGC 1183121 30 100.0 37 .............................. AGAATATAAAGAAAGTGTTCTTGATCCAGGGGATTAA 1183054 30 100.0 37 .............................. CAAAAGTTGGTATAAGCACGGATAAAGCAGCTACATA 1182987 30 100.0 38 .............................. TTATATAGCAAAAGAAATACAAAAAACGTGTTAAAAAT 1182919 29 83.3 0 ....A......-.............T..TA | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 99.3 37 GTTTGTACCTTACCTTGTAGGAATTGAAAC # Left flank : CACAAGAGCAAAGCGCAAGTACCGAAGAAATGAGTTCAGCTATGGATACTATTAACTCTTCTATACTTTCAATCTCATCAAATCTCGAAGAAGCATCAAACAAACTAGCCAAACAAGAAGATTTAATAAAAGAAACATTCGAAACTTCTAAAAAACTTTTCAAGCTTTCTGAAAAGCTGTTAAATTCAATAAACAGATTTAAAGTAAAAGATTAAAATAAACACCATCAAAACTCTCCGCAAAAGGCGGAGAGTTTTTTATAACACTTTACACTCATTCTTTTACAAATTAAATTTTTATATAAACGAAACAAAATTTTTATAGTTAAATTCAGTCGATGTGTGGTAGTGTAAAAAGTCCTGGAGATCGACTGAAAAAAAAATAAAAAAATTGTGTAACTTTAAAATATATTACGTTAATATTGTTTATTATTTATTATGATTTTTTCAAAAAGGTTGCAAAAAGTAATGACATGTAATATAATTATAATGTAATCTATG # Right flank : ACAGAAGATACAAGTATACGCTTTGCCTTGTAGTAATTTACATTTAATGATTGTTATAAAAAATCTCCACATTTAATGAAAGTGGGGATTTTTTTAAGTTATTGTCTAAATTAATTTTCCATACTATAATGTTATAAAGCAAAATGTGAATTAAAATGGAAGAATCGAGGAGGTTTAAAAATGATTAACAACATAATTTTTGATCTTGGAAGGGTTCTTATTAACTGGGAACCTGAAAAATACATGAAAAAAGTTTTTGACGAAAAGACAATTTCTTTTCTACTGGAAAAAACATTTAACACTAATGATTGGAACCTTATGGACAAAGGAGTTATTGATGAACAAACACTCTGGGAAAATAAATTAAATCAATATCCAGAATATAAAAAAGAAATTGAGCACATGAAAAACAAAGTTTTAGATTTACTCACACCAATTGAAGAAAATGCAAAGCTTCTTTATATACTAAAAGAAAAAGGCTATAATCTATACATCTTATC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTACCTTACCTTGTAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 9 1262687-1260669 **** Predicted by CRISPRDetect 2.4 *** >NC_011653.1 Thermosipho africanus TCF52B, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1262686 30 100.0 35 .............................. GGCAACCTGGAGTTATATCTAGAATTTTCTTGAAA 1262621 30 100.0 35 .............................. AAGAAGTCGATTGCCCATTCAAATATACTAATTAT 1262556 30 100.0 36 .............................. ATACATTTACCACATCATTGTGAAACTTGAACAAGA 1262490 30 100.0 37 .............................. TCTAACAACTCTACATCTTGCCTATCTTGCTTAAACA 1262423 30 100.0 36 .............................. AATGTTACCTTGTTAATCGAGGCAACAACGAAATAG 1262357 30 100.0 36 .............................. CATGATTGTTAGTTTGGAACCAAAAAGGTTCCGAAA 1262291 30 100.0 36 .............................. TGTATTTCCCACCAACCAAAATTATTGGCGGTGATT 1262225 30 100.0 35 .............................. TTGTTTTAAAAAGGGCAACGGGCTAAGCCCATTGC 1262160 30 100.0 37 .............................. TTTACTCCTGTTATCTCGAACGTTGCGGTGATTAATC 1262093 30 100.0 35 .............................. TACTCAATAGTTCTCATATATGAAGTCACCTCCGG 1262028 30 100.0 36 .............................. TTGCTCTTGCAACCCCATTTCCAGCTGATATGATAG 1261962 30 100.0 39 .............................. TCAGGTGTAGCAACATCAATCATTATCACACTATTACTT 1261893 30 100.0 36 .............................. AAGGTTGGTAAAGAAAGGAGGTGTGATAATGTTTAA 1261827 30 100.0 35 .............................. ACTTCAACTTTCTTCCTCTTTTTGCCATTCTCCCA 1261762 30 100.0 36 .............................. ATTCTTCTGGTTCATCTGCTGTTGTTTCCTTTGACA 1261696 30 100.0 38 .............................. AATAAACGTATGCATTGCCAAAATAAAGCAAATCGCTT 1261628 30 100.0 35 .............................. TTTTTATTCCAAATCCATCTATGTTTATATTCATT 1261563 30 100.0 36 .............................. AAAATTAAACCACTCTCTGGAAGAGCAATGGCATAC 1261497 30 100.0 36 .............................. ACGAAATAGTAGAAGCAATAGTAAATGAGAAGTTGA 1261431 30 100.0 37 .............................. CTTGCTTTGCGATATCATCCATTGCTGCCACCACCTT 1261364 30 100.0 36 .............................. ATATAACAGGCAATAGAGGGACAACAGAAATTGATA 1261298 30 100.0 37 .............................. TATATCACCTCTTTACTTTTTAAATAGCATAACTAAA 1261231 30 100.0 36 .............................. GGTCGAATCTAACGCTGACGTCGTAATCTTTGTTTG 1261165 30 100.0 38 .............................. CATTTTGAGGTCTCTGAGTAATGACTATGACATGAAGA 1261097 30 100.0 37 .............................. AAGGAATTGCTGAATTTGGTTGGTAATTCTGATAAGA 1261030 30 100.0 36 .............................. ACTTCTTCTGGATAAAAAGGATAAGTGAATTTGAAT 1260964 30 100.0 37 .............................. TCCAAAAATTGCCCTCAAAATCAAAAAAAGTATCTAA 1260897 30 100.0 36 .............................. TCAGATGTGGCAACCAAGCTCGGTAAAAGAAACGAG 1260831 30 100.0 36 .............................. TCTTTTAAAAATAACAAAGGAGATGAAGATGTGTCT 1260765 30 100.0 37 .............................. ATTCTTTACCATAAAATTTTCTAATTGCTTGCATTTG 1260698 30 93.3 0 ...................AA......... | ========== ====== ====== ====== ============================== ======================================= ================== 31 30 99.8 36 GTTTTTAGCATACCTATTAGGGATTGAAAC # Left flank : TTTTTCTGACGATAAAAACGAAAATATAACACCAATATCAGATTTTTCGATTATAGAAAGCAAACCTAATTTTGTGGATGTTTTCGTAATATGTGACGATATTTCAGAGAAAGCTTTTAAAAAATTTTGTGATATAATAAAAATAAAAGATTATTATGAAAAAAGAAAAAAATACTTAGAAATAAAGTCTATAATAAGCAATTACACAATTTCATTACCGATAGAATACCATTCATCATTTGTTGAACAATTTGGACTTTATCTTATTCCACGTGAAATAGTAAATGATTACTACGATTATGAAACAGGGTTTAAAAGACATAAAAAATCATATGATATAATATAAGTATAAATAAAATTCGTCGACCATTAATCACGTAAAAATAGATAGAGATCGACGAAAAAGAAAAATGAGGAAATTAAAAGGTTCTGGAAATTGATTAACAAAATGGTAAAAAAAGTAAAAATACCAAAAACTTTTAAAAATAAGTGTTAAACGG # Right flank : TATTCTAAATATAATTCATCATTTGCAAAAAATATGTTTTCATTATAATTACAATAGGTTGAAAGAAGATAAAAGATTATAAGCCTGTACCATTCGAAAGTTTTTATTCTACCTAATTTGAAATTTTTGGTATAGTTATTCGGAATTATTTTAAAATATTTAAAATAATTGAGGTGAAAATTTTGAATGTAGGTGGAACACTAATTTGGTATTACCTGATTTGTAAGAGAGAGGTTTGGTTAATGACACATGAAATAGTACCTGATCAATATAATGAAAATATTGATCTTGGACGATTTATTCACGAGTTTTATTATAAACGGGATAAAAAAGAGATTAGATTTGGTAACGTTGTTTTTGACATACTTTATGAAAAAAATAATCGACTCATAATAGGGGAAACGAAGAAATCTTCTAAGTTTTCCGAGGCCTCTAAATGGCAGTTGATTTATTATCTGAAGATTTTGAAAGATGCTGGTATAATCGCGGAAGGTATGTTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCATACCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 10 1333054-1332271 **** Predicted by CRISPRDetect 2.4 *** >NC_011653.1 Thermosipho africanus TCF52B, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 1333053 30 96.7 35 ..................T........... TAGCCTTCGCCTCAATGCCTGCGCGCGCACCATCA 1332988 30 96.7 34 ..................T........... CAATGCCGAGCCTTGTTCTTATTAACTCCTTTTT 1332924 30 96.7 39 ..................T........... TAGATTGGTTCTGCGAATTCAATGTAGTAATCTCTTGCC 1332855 30 100.0 36 .............................. TGTTTTTAATTCCTCGTCGTTAAAAAAATCAATATC 1332789 30 100.0 37 .............................. ATCCAATCTACACCAATACTATTTAATGTTACATACC 1332722 30 100.0 40 .............................. CGGGCATCGCCTGTATTGCTATATCCCCCGCCTGATTCCC 1332652 30 100.0 36 .............................. CACCTGTAACTCTTTTGAGTAATATGCCATCATGTT 1332586 30 100.0 46 .............................. TTCTGCTTCAATCCCCAATCTATATTCTTCTAGTTCTATAATTCGT 1332510 30 100.0 42 .............................. GACGATTAATAGAACTAAGTGACAAACCATCAAATTGTTCAA 1332438 30 100.0 36 .............................. ATATATGTAGTACATGTTTTGTTTTGACTATGTATC 1332372 30 96.7 42 ...................A.......... TAAAAATGTGATTAGTGCGTATCACGCTGTAAAATGGTCTTC 1332300 30 90.0 0 ...........................TTT | ========== ====== ====== ====== ============================== ============================================== ================== 12 30 98.1 39 GTTTAGAATCTACCTATGAGGAATGAAAAC # Left flank : TAAAATTACTATATTGTTATTATATAGTTAATTAAAAGTAAATTGTAACCATAAGTTAGTTTGTATCATGAACTTTTTTAGAGAGGCCAAAAAGACGTGTTTTATGCAATATAATATCATCAAAAACAGTTTTAATCGTAAAATGTCTATTTTACTATTTCTTTCAATCTTGAAAATAAATTTAATCTTATTCTTGTAATATTAATTAAAAATAATATACATTATTTTTTAACTGCGATTTCTATGTGTATTAAATTAACTCAATAAAAAATATTAACTTTATTGTAACCAAGTTCTTTATACCTTAAAAATAATACGTTTATTTTTCGACTATTGTAACTTTTGTGTTAATCCACAAAAATTGTCTAACTTTCCGGGGGATCTTTTTATATCCGTTTTTTCGTAAAACCGCTTAAATAAAAGATTTTACATTTCGTTTACTTCAGCTCAAAGATTCCGTTACTTGTCGGGGTTGCTTTTATATAATATAATTATTACGG # Right flank : CTTAGATTTTGAAAAATATGAATTGATATGACATACATTATTTGAATGAATCTTTGATTAAAAAAAATCTATCTACACTCTTTTTTCATTCTAAATTCATAGTTCATTTTTTAATTTTTTCAACTACTAACTAACCTTTCTTACACACCTCTAATTCCTTACATACAGTCCATTGTGTTAACGTTGAGAAAAATAATATTAACAGAATGTTTTCATAAATATTCATCAAAAATGGTAAAATATCTTAGGTTATAGTCGCCTGGAACGTGTCTTAAACGCCGAAAAAAGGCTACATGTTCCAGCGGTTGTTTATTTCAAAAAAACTGAGGAGGTGAACTTTGTGTACGCTATTGTTGAAAGCGGTGGAAAACAGTTTCGTGTTGAACCAGGAAAAGTCTTTTTCACTGAAAGAGTTGTCGGTAAAGGTGAAGGAGAAGAAGTCAAACTTGACAAAGTCCTTATGGTAAAAACAGACGATGGAAAAGTTTTAGTCGGGAAAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAAC # Alternate repeat : GTTTAGAATCTACCTATGTGGAATGAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 11 1963519-1959889 **** Predicted by CRISPRDetect 2.4 *** >NC_011653.1 Thermosipho africanus TCF52B, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1963518 30 100.0 36 .............................. AAATATTTTGGAAATCCTTTACGAATGCCGAACTTT 1963452 30 100.0 39 .............................. ACTCTTACTACAATCGGGTTGGCACTATTATTAGTAATG 1963383 30 100.0 35 .............................. GGGTATTACACAGAAACAGCAACGCCTGATTACCG 1963318 30 100.0 35 .............................. TTGCTTTTCTTACTAATAAATAAAGCTATAACTAA 1963253 30 100.0 36 .............................. TCTACTTTTGTTACTTTAAATTTATCTGGTGTTTCT 1963187 30 100.0 37 .............................. TATTTTTGTGCAAGAGCAAGAAAAATTTGGAACTCAT 1963120 30 100.0 36 .............................. CAGCTTTACTGAACCGACTGCCTTCGAGCACAATCC 1963054 30 100.0 38 .............................. TCTATGAATAAAACATCTGTAAAGTTTCCACGAGTTAC 1962986 30 100.0 36 .............................. TCTGTAATGATAGAATCTGTATCGCAATAGTACACG 1962920 30 100.0 37 .............................. AGTTCTGCATACTTTTTAATAAAATAAGTTATGTTTT 1962853 30 100.0 36 .............................. CCCTTAAACTTAACCATAAAAATCCCCTCCTTTGTA 1962787 30 100.0 38 .............................. AAGATGACGGTGTTATTATTACGGAGTGGGAAGAGTTC 1962719 30 100.0 35 .............................. AGACATAAAATAAAGATACTAAACAATTGTACTAA 1962654 30 100.0 35 .............................. TAGCAATATCTCGTGGTGGAGTTGAGTGAAAGAAC 1962589 30 100.0 38 .............................. ATATTTTCAATATCAAACTTTGAATCTAAAAAACCCAA 1962521 30 100.0 37 .............................. CCGAACCAATCGACGAAGAATTATACAATTGTCTCGC 1962454 30 100.0 36 .............................. TCTATAAACTCTAAGTATTCCTCTTTCTGGTTCCAA 1962388 30 100.0 38 .............................. AGGGAAGACTGTGGTATAAATATAAGCGGAAGGTGCGA 1962320 30 100.0 38 .............................. CTTTTCAAAGACCCTCTCGCACCTTCCGCTTATATTTA 1962252 30 100.0 38 .............................. GATCTTTTATTAAGAAGTATTTTAACGGAGATCGCACA 1962184 30 100.0 37 .............................. TTTCCTGAGGTATCTGAATGCGCGTTGACAGAGATAC 1962117 30 100.0 36 .............................. TAATAAGTTGCATCGTTTAGATTAACGGTTGAAGCT 1962051 30 100.0 35 .............................. CCAAATATAAGTGAATAATCTGTTGCTATTATCTC 1961986 30 100.0 36 .............................. TTGGAATTTGATATATCTCCACAAGCCACTTCCAAC 1961920 30 100.0 37 .............................. ACTCTGTTTACAAGCAGTGTTTTGTCTTCTGCCTTAT 1961853 30 100.0 36 .............................. CAGCTAAATAATGCAATTTATCATCGTTTATTGTAA 1961787 30 100.0 35 .............................. ACTTTTAGGAATAAAAGAACCATTCGATGAAGTGC 1961722 30 100.0 36 .............................. ACGCATTAGATTGGCAAGGACTGTGGAAAGAAACGA 1961656 30 100.0 37 .............................. ATAGATTTGCAAAACAAAAGTTTTAGCATTGAAGCTA 1961589 30 100.0 36 .............................. AATAAAAAAGGAGGTGTAAGTATGAGTGATAAAAAA 1961523 30 100.0 36 .............................. GCAACAGTTTTACACAAGATTTGGAAGACTATGAAG 1961457 30 100.0 36 .............................. TTTATGAATAAAACATTTCCTGTAAAGTTTCCACGA 1961391 30 100.0 38 .............................. GTATTTCTTTAGCCTTCCCTATATTCTGACTTGCTCTA 1961323 30 100.0 37 .............................. TGCATTTCAACCAGTATAAATCTGCAGCAGAAGACTT 1961256 30 100.0 37 .............................. GCGCTAGACTTTTTGGTGACGCCACAAACCAAATTTG 1961189 30 100.0 37 .............................. ATTCCTAACGCTTCCGCAACTGTCTGTCTTGATACAA 1961122 30 100.0 36 .............................. TGGTAGAAAGATTAAACATGAAACGGCTTTACGTAA 1961056 30 100.0 36 .............................. ACTTTCTTTCAGTAACAACATACCACCTCTCTTTCC 1960990 30 100.0 35 .............................. ATGGTAGACCAAATAGATGCAACTCATGGATTAGA 1960925 30 100.0 37 .............................. TACCTTCCCCTCCTTGTGTCGTGCTGCTGTCATATGC 1960858 30 100.0 37 .............................. ATTTGCAAAATCAAAAGGGAAATTACCGAAGAATATA 1960791 30 100.0 37 .............................. TTTAATTTCTGTGCTACTGAATCAAGTGTGGAAACTA 1960724 30 100.0 37 .............................. TTTAATTTCTGTGCTACTGAATCAAGTGTGGAAACTA 1960657 30 100.0 37 .............................. AAATATATTGAAATAGCAAAAGAAAAAGGTTATAATA 1960590 30 100.0 38 .............................. TGAGTTTCCTCGCTATCATCTCCATCAGACTCTTTTTC 1960522 30 100.0 36 .............................. AGAATATTGGCCGTTACAAGATTGGGATTGGAAAGA 1960456 30 100.0 36 .............................. TCGGCGTTATAACTTGCTCATAGACGCTGTCTTTTA 1960390 30 100.0 38 .............................. ACTGTTGTTTAGCTGTTCAAATTCCCATTCGAAATAAT 1960322 30 100.0 36 .............................. AAATTTTGTTCACGTTCTACCTTTAACGTTTCAAGC 1960256 30 96.7 37 .............................C CGACTATATGTAAATGGAGAAAAAGATATCGAGTATT 1960189 30 96.7 39 .............................C AAATCAGAAACGACGGCAGTATTGTGCTGGGACAAAAAA 1960120 30 100.0 39 .............................. TTTGGTTTGGCATCAATACTTATAGAAGGCGGTTCTTGT 1960051 30 100.0 36 .............................. CGTGCATTAGGTTTAGGTGTTAGGGTAGTAAATCTT 1959985 30 100.0 36 .............................. ACAATTAACTCAATCATACTCATCACTCCTTTAGTC 1959919 30 90.0 0 ....T...T....................A | T [1959891] ========== ====== ====== ====== ============================== ======================================= ================== 55 30 99.7 37 GTTTGTACCTTACCTTGTAGGAATTGAAAT # Left flank : ATAAATTGGAAAAACATTTTTTAGAAGATGAAGTTTATGAACCTTTAATAATGGAGTGGTGATCTTGTTTGTTATTTTATACTACGATGTTAATGTAAAGAGAGTTTCAAAGATGCTTAAAGTATGTAGAAAATATTTGACGTGGGTTCAGAATTCTGTCTTTGAAGGAGAAATAAGCTATTCAAATCTTGAGAGCTTAAAAAGTGAAATAAAGAAGATTGTAAAAGATGAAGATTCAGTAGTAATATACGTATTTAATCAAATGTTATATAGTAAAAGAGAAGTTTTAGGAAAAGATAAAAAAGAAGAAACAAAATTTTTATAGTCAAATTCAGTCGATGTGTGGTAGTGTAAAAAAACCTGGAGATCGACTGAAAAAAATAAAAAAATTGTGTAACTTTAAAATATTTTACGTTAATATTGTTTATTTTTTTGCTATGATTTTTTCAAAAAGGTTGCAAAAAGTAATAGAATGTAATATAATTATAACGTAAACTATG # Right flank : TAAAAGAATTTTTAAAAAAAACACCTCCGAATTTATAAAATACCACTAATAGAGGTGTTTTTTTCATTATAACTGTGTTTCTGTTAAAATTATAAAGCATATTTTCTAAAAATACATATTAACTTTGTGTCTTTTTAAAAGTTTCACCTCAACTTAAACTTCATACATAAGCATTTAGATCAAACAATCCATGTCCGGAGAGTGTAAAAACTATTACTTTTCCTTTTCCTTCCTTTTTTGCATTTAAAGCTTCCCTTATTGCCCCAGCTATTGCATGAGCAGATTCTGGAGCAGGTATTATTCCTTCAATTTTTGAAAACAACTTTGCTGCTTTAAACGTTTCATCTTGTGAAAAAGTTTGAGCTTCAATTAAATTGTTTTTTAATAAAGCTGAAATTATAGGAGCAGCCCCATGGTATCTTAAACCACCTGCGTGTATTGAAGGCGGAATAAAATCTTTTCCAAGGGTGTACATCTTAAGCATAGGAGTAAATCCTGCA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTACCTTACCTTGTAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //