Array 1 2691-3695 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOLY01000071.1 Escherichia coli strain SC386 NODE_9_length_165582_cov_160.82_ID_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2691 29 100.0 32 ............................. TTGCCAGCCATGCCAATATCGGACGTCAGTTG 2752 29 100.0 32 ............................. GCGAAACTTCTCAGAAATCCCGGCCCAATGGC 2813 29 100.0 32 ............................. GTGCGGGCCAGTTCCCACATTTCCGGCGATAT 2874 29 100.0 32 ............................. TTCCAGTAAGTTTTCTGGTAGTCGAGGCCGAG 2935 29 100.0 32 ............................. GCATATTATGAACAGGATTTGCGCGGACGCGT 2996 29 100.0 32 ............................. CGCCGTGCCAGCTCCGGTGCGCCCATTTTCTC 3057 29 100.0 32 ............................. CCGGGCCGCTGAACGTTTCCCGTCGCACCGTG 3118 29 100.0 32 ............................. GCAACATATTTAAACGATTTAAGCCAGGCATA 3179 29 100.0 32 ............................. CCCGCTGGCGGATACTGGATATTTTTACCACG 3240 29 100.0 32 ............................. TGTGTCACGCCGCGTCACTTATCAGGGAATAA 3301 29 100.0 32 ............................. CTGCTTTAATCCCGTTTCGGTTACGTCCAGCG 3362 29 100.0 32 ............................. ATGATTTTTGCACGACGTTCAACCGGCGTTTC 3423 29 100.0 32 ............................. ATCTAACGGAGTTAATCTTATCCGACTTTTTG 3484 29 100.0 32 ............................. CGCATCAGATGATGGTGACGGTGCCGAACAAC 3545 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 3606 29 96.6 32 .A........................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 3667 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTATTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29395-30033 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOLY01000071.1 Escherichia coli strain SC386 NODE_9_length_165582_cov_160.82_ID_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29395 29 100.0 32 ............................. GCGGGGTCAGGGCTAAAACAATGCCTTTACCC 29456 29 100.0 32 ............................. GACGTTGCGCATAAATCGGCGTTGGCCGGTTG 29517 29 100.0 32 ............................. GAATAACGGTGTATCCCCAAATTTCGGATTAC 29578 29 100.0 32 ............................. AGCAATCACTATTTTGATGTCGCGTGCAGGCG 29639 29 100.0 32 ............................. TCCCGAACCGTGACATCTGTTATTAACCTCAT 29700 29 100.0 32 ............................. AGACATCCGGTCATACTGACATTGAATGGCGA 29761 29 100.0 32 ............................. GTTTTTGACCTGCGGCCAGTGATGCGCCAGCA 29822 29 100.0 32 ............................. TTCAGTGAGCCATAAAACCGCAGCTTATTTGC 29883 29 96.6 32 .........A................... TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 29944 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 30005 28 72.4 0 .AA........C..T....A..-.C...C | T [30024] ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //