Array 1 103-4677 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIVE01000082.1 Roseospira navarrensis strain DSM 15114 NODE_82_length_14811_cov_20.3263, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 103 36 100.0 36 .................................... GCCGATATTAAACGGGACATAAAAGAACGTGAGGTT 175 36 100.0 36 .................................... GAGATACTAAACAAGAGAAAGCCAGCACGTTCCAGC 247 36 100.0 37 .................................... ATGTGACTCCTGAAGAGTTCGCCGACTATGAACTTCA 320 36 100.0 36 .................................... ATAGATTAGGATCGTTTGATAGCTTCTGTGCAATTC 392 36 100.0 38 .................................... TCGTCTGTCAATCCTTGGCGTTCAAATTCTTCCCTGTC 466 36 100.0 38 .................................... GCGCGGCGGGTGTCGATCCGGTGGAGGCGATGGCGTAG 540 36 100.0 36 .................................... TTACAGCAGCGGCGGGTATACCGGCTCGCCCATTGC 612 36 100.0 37 .................................... GAGGAGGCCGAGGCCGAGAAGGCGCGCGCGGCCGAGG 685 36 100.0 38 .................................... GCCGCCGCGCCGGTCGTGCCGTCATAGCTGGCCGCGTC 759 36 100.0 38 .................................... CGATTGCGTTCTTTACCTCTGTCGCAACGTGACGTTGA 833 36 100.0 38 .................................... AGGGGGCCGCTTCCAAGCTGGCTAGCGGCGTCCACAAC 907 36 100.0 39 .................................... TCCTCGGCTTCCAACTGAGACTTGAGGTTGAGTGGTAGG 982 36 100.0 39 .................................... CTCGTTGAACTGCTCGCGGAGCGCCGCCGCGAAGTCGTT 1057 36 100.0 36 .................................... GCTGTGGCGGCGCGCCCGCACGGGCCGGAACGCGCA 1129 36 100.0 36 .................................... ACGATATGCTATATAATATGCTGGCTACAGTTGCTT 1201 36 100.0 37 .................................... AAGTTCACCGCCCCAATTGGCCATGGAGCATTGAAGT 1274 36 100.0 39 .................................... CATTGTTCAAGCCTGCATTCATTCGCGTTATGGAAGACC 1349 36 100.0 42 .................................... GTTTACCAACACGTAGAACATCATTTCCAGCAGAACCAATAG 1427 36 100.0 36 .................................... ATTACAAGCTGGATTTGAGACATGGCGTGATGACGT 1499 36 100.0 36 .................................... CATTAAGAACTCACGATACAAAGGTTTGATATACCA 1571 36 100.0 37 .................................... CCAGGCCACCCATCCCGGCCAGCCCGAGCACGTCGTT 1644 36 100.0 38 .................................... GAGGCGCGCGTGGGAGCGGCGAAGCCCGCCCCGGTGCG 1718 36 100.0 36 .................................... AGGGCGAACCGAGGCGGTTCGTTCGGCGGTTCGAGA 1790 36 100.0 38 .................................... CTGCACCTGCCGACGGACAACGAGGACAGGCCGCCGAG 1864 36 100.0 39 .................................... GTGACCCTGGCCCAGGAGATCGAGCCGGGGCGGACCAGC 1939 36 100.0 39 .................................... CACATTTGTAGGTTCTGATTAAATTCCAATAATAACGAA 2014 36 100.0 36 .................................... GGCCATCACCCAGCTGACCAAGGCCGGCACCGACGA 2086 36 100.0 36 .................................... ACGGCGCGCCATTGCGATCGTGGGCCCGCTGGTCCC 2158 36 100.0 36 .................................... GGCGATGAGCCGCGCGTCAAGGACGTGCGCATCGGC 2230 36 100.0 38 .................................... TCACGCCGACCACCAGACCGATGATCTCGTAATCCTCC 2304 36 100.0 36 .................................... CGGCCGGGTGTTCCCGGAGACGAACAAAATCTTCTC 2376 36 100.0 35 .................................... ACGTTCCAGAAGTTCGGCACGGGCACGGCGACCAC 2447 36 100.0 37 .................................... TAGCTGAAAATACAAAGGATCCTGCTAGAAGAACCCA 2520 36 100.0 38 .................................... GCGATCTGCGCTTCGCGGTTCAGGTTTTCAATGTCGGT 2594 36 100.0 37 .................................... TTATTTAAATTGAGGTGATTATGAAAACTGTAGCAGT 2667 36 100.0 38 .................................... CTACCATGATATCAACTTCAAAGTTGTCATTGTACCAT 2741 36 100.0 37 .................................... GACCCATTAGAAGGGTCTGCCGTTGACGTGCTATCGA 2814 36 100.0 39 .................................... GGCGGGTTCTGGATCCGGGGCGTGCTGGCGGACCGGGCA 2889 36 100.0 38 .................................... CGGCCTGACGGCGGCGGCGTGGGCGGGGCGTGCCGACT 2963 36 100.0 35 .................................... GGTCGGCTGACCGATACGGTGACGGCCGGCATGGC 3034 36 100.0 37 .................................... TTATTTCTTCTTTATAGTCATTTCCATCAAAAGATAC 3107 36 100.0 35 .................................... GCACTCGCCGGCATCGCCCCAACAGGTCGAGGCGC 3178 36 100.0 36 .................................... CGAGCGGTCGCGGATCGAGTTCATGGTGCTTTTGAA 3250 36 100.0 37 .................................... CAAAGGACCACGGATTGAACATGTCCGCAGGTGCGTG 3323 36 100.0 40 .................................... CGGTCGCGATCACGCTGGTCTGCGCGCCGGAGCCCGTCGC 3399 36 100.0 39 .................................... CAACAAGTCCGGCATCACGGGCGAGAGCACCACGTTCCA 3474 36 100.0 38 .................................... TGCCCCAGCTCCAGCTCGGCGCCGGGCGGCAGGGCCCG 3548 36 100.0 37 .................................... GAGACGCCAATGCCGGCGGTGCGCCCGCCGGTGACGC 3621 36 100.0 36 .................................... CAGCAGCTTCTTGCCCGCCGGGTACACGAGGCCCTG 3693 36 100.0 37 .................................... TATTGGGTGCTCGTGCCGAATGGTGCCAGCGCCCCGA 3766 36 100.0 37 .................................... TCCGCTTGGTGCAGCGCGCGACCCTGAGCATCGCCCG 3839 36 100.0 38 .................................... GGCGTCGGCGCCCTGGAGGCCGCCGTCACACCCATGAC 3913 36 100.0 40 .................................... GGGGACGCCGACCTGTCCCGCCTGATCGCGACGGCCACCC 3989 36 100.0 37 .................................... GCAGCTTCATGGGCGATCTGTTCGAGCCGTCGCCGCC 4062 36 100.0 37 .................................... GCATCGTGGACCTGTTGGACGGCGGTAAGCTCATCAT 4135 36 100.0 37 .................................... GCCTGACCGAAGCCATGGGCGTCATGGCCGCGCCCAC 4208 36 100.0 36 .................................... GGGCCGGGTGTTCCCGGAGACGAACAAAATCTTCTC 4280 36 100.0 36 .................................... AGGAAGCCGTGCGGCGGGTGGTGCAGAGGTAGACAT 4352 36 100.0 37 .................................... CCAGCCTGAACGCGCCGTGGGTGACGTCGTGGGTCTA 4425 36 100.0 36 .................................... GAGTCTGGTTCTACAAGTTACTTATCTGATACTAGC 4497 36 100.0 36 .................................... ATGCGCTTTTTGTAACTCGACGAAGTGTGCTTCATT 4569 36 100.0 37 .................................... CATGAGGAAAACGACTGTAAAAAAAGACGGAAGACGA 4642 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 63 36 100.0 37 GCTTCAATGAGGCCGGGGCATTACTGCCCCGGAAGG # Left flank : GTTCACTCTATGTTCTGCGCCATTTCGGGCCACCTGTCACCACATGATGCGGTCCCGGACTCAAAGGGATAAGCCTTCTTCCGTTATATCGACCGCCATTAAG # Right flank : GAGACCGCCCCGCAGGGGCCTGTCCTGTCAACAAGTTTGGTCCCTTTTGCGAGCGCTGGCAAGACAGGACCGCCCGCCGACCCGGCCGCCACCGGACGGGCGCCAGCAGGCCCGGCCGAACTCTCTGATTTACAATGACAAACAGCCTCTGCGAGCGCTCCCCGAGTCGCGGGCGCCGCATCAGCGCTCGCCCGGGCGCGGCGGCCTCTTTTCCTGGCCGGCTTTTGTCCTGACCCATCAGGACAAAAGCCATACGCCGCTTCGGGGCCCCCGCCCGGTTGACGCGACACGGAAAGATTACACGATGATCGGGGTGCGCTCCACCACCGAGACGGCCTTGCCCAGGCTCTCCATCCGGGGCTTGACGGCGTCCGCCGGGCCCAGATCGAGGATCAGGACGTGGTCGGCCCCGGTCTCGATGATGTCGGCCAGGGCCCCGCGCAGCTGTACCAGCCGCTTGCGCGACAGCCGGCACTGGAAGACGGAAAGCTGCAGCCACG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCGGGGCATTACTGCCCCGGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 107-422 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIVE01000121.1 Roseospira navarrensis strain DSM 15114 NODE_121_length_4651_cov_21.5321, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 107 37 97.3 34 ......T.............................. CTCATGAAGAGCGTCGCCCGTTGGGAAACGCGGC 178 37 100.0 31 ..................................... CAGGGCCTTCAGGCCCTCGGCGGAGACGTAC 246 37 100.0 32 ..................................... AAACCGATGCCGTTGAGGCTCGTGGATTCCAC 315 37 97.3 34 .....G............................... TTGGGCAGGACGTTGTCCCGCACCCAGCCGTCGG 386 37 86.5 0 .....G.........................A.C.CA | ========== ====== ====== ====== ===================================== ================================== ================== 5 37 96.2 33 GCTGAAGCCTCTTCCGCGTTCTCGAGCGGACTGAAAC # Left flank : AACGTGTCCCGATCCATGCCCGCCTCCCGCGTTCGGTATCCTTCATGATACCAAATCCGGGAATGCATAGCGAACGCTATTTGAGCCTTCCTGAACGGCGGCGTAAG # Right flank : ATGGGCCAAACTGAAAGAGGCGCCCCCCCGGAGCGGGGGCGCCTCTTTCAGTTTGGCTACAGGGCTATCGTGAGCGGATCCCGGCGTCCGCTCCCGTTTGATGAGTCGGGATCAGTCGCCCGGCAACTGCCCGGCTGCGGTGGCGGTCGTTGTTCTGTCACCCGCATCTAGGGAGACATGGCCGCTGGATTGCAGCGCCAGCCCCAGTCCAAACAGAAGAGCCGCCCCGGCGGCCAGGGTCCGCCGCGCGCCCTTCTGCCACGTCGTGCGCCCCTGCTTCGTCTCCACACGGCGACCGATCCAGGGCCAGGCCCGGAACAGGCCTGGACTGACTGCAAGGGCGATCAACCCGGCGACCGCCATCGCGAACAGGCTGGCCAGCACCCATGTGTAGCCAGCCGACGCGCCCAGGGCGGTGGTCGCCCGCTCCAGCAGCGGCCACAGGAAGAAGTGGCTGGCGATGTCCTGGCTGCCCAGCACGGCGAATAGCACCGCGAACG # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGAAGCCTCTTCCGCGTTCTCGAGCGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 3562-486 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIVE01000124.1 Roseospira navarrensis strain DSM 15114 NODE_124_length_3657_cov_21.2095, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================================================================================== ================== 3561 36 100.0 37 .................................... CGAATTTCTCAACCAACGGACGATTTCATTTACTCTA 3488 36 100.0 38 .................................... AGTTTTTTCTTGGAGACGATTTAGTGAGACGAATAAAG 3414 36 100.0 37 .................................... CTCATTTTCTCTAGCTTTTGAATTATCTCATAAGCTT 3341 36 100.0 36 .................................... GCCACGGCCGGCAGTATGGCAGCCAACGCTATGATG 3269 36 100.0 37 .................................... GTCGATCAGCAGGAGGCCGTGGACAAGTTGGCGTTCT 3196 36 100.0 37 .................................... TACGGGATAGAACTGCCCCAAAATGGGGCAGTGATCA 3123 36 100.0 39 .................................... ATCGTCGATCAGCCGTGGTTCAATGCCATGGTCACCGAC 3048 36 100.0 36 .................................... GATCGCGTCGGTGGGCCTCATCAGGTCCAGGCTGTC 2976 36 100.0 36 .................................... CGCGCCGCCGCCGCCCTCTGACGAAAGGACACGACC 2904 36 100.0 37 .................................... CTCTTGGCGGCGTCCTCGACCTGGGCGGGCGCCACCT 2831 36 100.0 37 .................................... GGGAACACAACGACAATCGGCGTATTACCGTCGGGAA 2758 36 100.0 37 .................................... ATAATATACAGTGTCCCGGCTGTCGCGGTTACGGTGC 2685 36 100.0 38 .................................... AGTTGCCCCCCAAACCACTCGCCATTTCTTCGCGGCGC 2611 36 100.0 40 .................................... GGGACCCCCTTTGGGCGGCCCTTGCCCCGATTTCCGGCAG 2535 36 100.0 36 .................................... AAGTCCCGGCGGCCACCGTGATGAACGTCATTCCAT 2463 36 100.0 36 .................................... GAGGCCCGCGCCGAGGCGGGCGAGTTTAGCTCGGCG 2391 36 100.0 37 .................................... GCCAGCCTGTCCGCCCCCACGAAATCCAGGTGCTCGA 2318 36 100.0 38 .................................... AGGAGGAGACGGAACCCACCTCGACCGAGACCGTCCCC 2244 36 100.0 40 .................................... GTGGTTGCGCTGGTGGCCCGGGGTTGAGAGTGGGGACGGG 2168 36 100.0 36 .................................... GCTGCCTCTGGCCCATCAGGGTTGATCGGTGGCCCA 2096 36 100.0 37 .................................... GGTACATCAGGCCGGGCGACACCGTGGCGGGCGACGA 2023 36 100.0 38 .................................... CGTTGAATTGGCTCTCTTCCAGCCTATTGGCAGACGCT 1949 36 100.0 39 .................................... CGGCGGCGCGGGTCTTCGCTCCGTGCTTTCGCGCCCCCC 1874 36 100.0 39 .................................... TTCAACGTAGGTGCGCTGGTCAAGCGCCAGCATTTTCAG 1799 36 100.0 43 .................................... CAGGCCGACGCCGCGCGATCCGCCTCCTTCGAAAACAGATTGG 1720 36 100.0 37 .................................... TCGCCCTGATCGTCGCCGGGCTCGCTATCTTTCTCGC 1647 36 100.0 39 .................................... CATTAACCGCCGGGAGGATGCGTGGCGGGTTGTGCAGGC 1572 36 100.0 42 .................................... CTCTGGCGACATATTGAGGTGGTCCGCGATCCGGAGGACGAC 1494 36 100.0 38 .................................... GGCGGGCGGGGCACCTGACCATGCCGCGACCACCTGCA 1420 36 100.0 38 .................................... TACGTTCATCGGGAACCTTGGCCTCACTGGCGTCATCC 1346 36 100.0 37 .................................... AATTACGAGGGCTCGGGGCTGAAGGCGCGGCATTCCG C [1340] 1272 36 100.0 38 .................................... GTGCAGCCGATCCACGGGTTCCAGGTGTGGTCACACCC C [1266] 1197 36 100.0 37 .................................... GGCGCAGATATGGTCGGCTCTGACATTCGGGATTCTG C [1191] 1123 36 100.0 36 .................................... ATTTGTTCTTCTATTGTCCCGGTCTGTGTCCCACTT C [1117] 1050 36 100.0 39 .................................... ACGGCGGCGGACGTGACCGTGGGAAGTGCGGCCGTGCTG 975 36 80.6 118 ..............C.............CCGCGC.. AACCCGAGGCGGGCGCCAGCCCGCCGACGGTGGTTGCGCGCCAAGAAAAAAAACAGTCACTGATAACCGCCCGTCTTTGTTTGCGCGCGACACCCGTCGCACCTCCGGTGCTCGGGTC 821 36 80.6 37 GAGCG..T......C..................... CACGACCCCATCGTGGCGCAGGTGGACCCGAGCGACA 748 36 80.6 118 ..............C.............CCGCGC.. AACCCGAGGCGGGCGCCAGCCCGCCGACGGTGGTTGCGCGCCAAGAAAAAAAACAGTCACTGATAACCGCCCGTCTTTGTTTGCGCGCGACACCCGTCGCACCTCCGGTGCTCGGGTC 594 36 80.6 37 GAGCG..T......C..................... CACGACCCCATCGTGGCGCAGGTGGACCCGAGCGACA 521 36 80.6 0 ..............C.............CCGCGC.. | ========== ====== ====== ====== ==================================== ====================================================================================================================== ================== 40 36 97.6 42 CCTTCCGGGGCAGTAATGCCCCGGCCTCATTGAAGC # Left flank : CTCCTGGGGATCGTCACGACCAAGGGACCCACCACCTACGATATGTTGATCGCGCCGGAAGCAAAGGGATAAGCCATAACGGAAGTAGCGGCGCA # Right flank : CAACCCGAGGCGGGCGCCAGCCCGCCGACGGTGGTTGCGCGCCAAGAAAAGGGTCATCACGGATTTCCGGGGGACCAGAAGGGCCCCTCTGGCGTCGCGCTTCGAGCCCGAACCCTCTCCCAGCCTCCCCCCTTCCGGGGGGAGGTGTCCGGACACCATGACCTCGCGAACCCGATTTTCCGTGATGAACCAAAAAAAGAACCAGTCACTGATAACCACCCGTCTTTGTGTGCGCTCGACACCCGTCGCACCTCCGGTGCTCGGGTCGAGCGCGTGGCCGTCATGCCCCGGCCTCCCGCGCGCAACCCGAGGCGGGCGCAAGCCCGCCGACGGTGGTTGCGCGCCAAGAAAAGGGTCATCAAGGATTTCCGGGGGACCAGAAGGGCCCCTCTGGCGGCGCGTTTCGAGCTGAGCAACCGGGAACATGGGTAACACTATTGACCGGCAACATGGGTAACGGTGTTCTGTGTTTGTTCGGCTTTGCGC # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCCGGGGCAGTAATGCCCCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [39-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //