Array 1 317384-316689 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QSKN01000003.1 Streptococcus gordonii strain AM27-4 AM27-4.Scaf3, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    317383	    36	 100.0	    30	....................................	CAAAGCCAATCATCATACTAATGTCTTCTG	
    317317	    36	 100.0	    30	....................................	TCCCATGGCTTGATAGACATCACGGAAGCG	
    317251	    36	 100.0	    30	....................................	CTTTCAAATCTTTGATTGATTCCCCATTGT	
    317185	    36	 100.0	    30	....................................	CTATCTTTAAAAAATTACTTCAACTAGATA	
    317119	    36	 100.0	    30	....................................	AAGCTCACCAATTACAGCGCCATATCCTGA	
    317053	    36	 100.0	    29	....................................	GGAATTTCGTTTTCAGGTACGTCGTTATC 	
    316988	    36	 100.0	    30	....................................	TAACGGGTCTTATGAGCCGTGGTATGATGA	
    316922	    36	 100.0	    30	....................................	ACTACATGCATATTAAACTTATATGTGGGT	
    316856	    36	 100.0	    30	....................................	CAACATCTACATTAGGCAAGCTCCAATTAC	
    316790	    36	 100.0	    30	....................................	CGTATTTAGCGACATGATTCGGATTGCTTA	
    316724	    36	  80.6	     0	.........................G.G..ATT.GG	|                             	
==========	======	======	======	====================================	==============================	==================
        11	    36	  98.2	    30	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	                              	       

# Left flank :   TGGATGACTATCTATCCTATAATGAGTTTGTGAACTGTTGCGAAAAAATGGAACTTCTTACCAATCATAGTAACTCACTATATATTGTTTCGTTTCCATCCAATGAGGGCTATCTTCATGTCACTAAAGAAGTATTAGAAGAAATCAATATTGTTTCCGATTATGTAGATCATTTTTATTCGTTAGAGTTTATGTATGAACGATTTATCAATCAATATCCAATAAATCAAATACCTAATGAACAAGAATTTTTAACTTCTTTAAGAAAGGTTGGAGCCTATTTATTTAGTTCGGACATTCTTCATATGAGCTTATCAATAGAGGATCAAGTAACATTAAAGATTTTAAATATCTTGTATCAGTATGAAATGAAAACAAAATTCCGTATTGAAGCAGTCAATCCAATGTTATTGAAATATTTGAAAGAATAGTATTGACGAGTGGAATTTAAGAATTTATAATATTTCTGAGGTACAGAAACCAAAATTGACGAATTTGAG
# Right flank :  TTATGCTATACGAATTTATCCAAAAAACAACCACCTATTTAGGTGGTTGTTTTCATTATCTATCACTGCTTACTAGAAGAGGAACTTGAGCTGCTTGAGCTGCTTGAGCTGTCGCTGCTGGATTCAGAACTGTCTTCTGAGGAGCTGGTGCTTTCAAATTGTTCTGGGTGGAGCGCTCGATAGCTTGGAGCATCAAAGAGGTCAATGGTCGATTCACCCTTGCGTTGGCTGTAGAGACTGGTTGATTGGTCTCCTTTTTCTTCCTCGATTTTCTTCAATGCTTTGAAAGAGTGGTTGTAAGAGTATTTCTTGATATCTACCTTGCCCAAGTCATTACCCTTGTAAAAGCGAATCAAGTCACCGGTTTGAATAGCGTCACTAATCTTCAGCTGAGTATTGGCAGCATTACGAATGTCATCCAGTTCTTTCTTGATGGTTTCGTCTGGATTGGTAATTTCCTCACCGGTTTGAGTGTAGTAAGTCCGTCCGTTGAAGCTAGT

# Questionable array : NO	 Score: 6.17
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [7-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,4.91   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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