Array 1 181868-179707 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWGN01000005.1 Klebsiella pneumoniae strain VRES0208, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181867 29 100.0 32 ............................. GCCGACATGCTGGGCGCGATCACAACGGTTAA 181806 29 100.0 32 ............................. GGCGCGGTGTGGTATTGGGTGAAACTGGACGA 181745 29 100.0 32 ............................. GCACTTTACCTTCGAGGTCGTTCCCTTCGAGG 181684 29 100.0 32 ............................. ATGTATGGATCGAGCCAGGCGCAACCACGAAC 181623 29 100.0 32 ............................. CCAGGGCTTTCGGACCGTCAGGAGCAAATCAA 181562 29 100.0 32 ............................. TAAACGGCACAAGCGGCACCTGCGGCCAGGTG 181501 29 100.0 32 ............................. CGTGTCGGTCATGGCGATGCTGGGCGGCGATA 181440 29 100.0 32 ............................. CGCCTGGGGGGATCGCGGTGAGTGATTCATTT 181379 29 100.0 32 ............................. CGCCTCAACAAATGCGACTTCATAGCCTGCTG 181318 29 100.0 32 ............................. GCTCGGTGTGGCCTAAATCAATTCGCGGATCC 181257 29 96.6 32 ............................C CTTGCATACGTGTTACCCTCCATAACCTCACA 181196 29 100.0 32 ............................. CGTCGCCTGGCCGTCTGGTAAGTCCGGTTTTA 181135 29 100.0 32 ............................. CAGATATCGGCACCGCGAGGTTCTGAGTCGTA 181074 29 100.0 32 ............................. AGATCGAATAGTCGTAGTTTGTTTTACGGCAG 181013 29 100.0 32 ............................. CTGGAACGGACCCTGAGCGCCTTTGGGGGAAA 180952 29 100.0 32 ............................. ATTTCTCCGGTTGCCCTGGGTTCCCGGGGCAT 180891 29 100.0 32 ............................. GTGCTGGCCTTGAGCTTTTCAGCAATACGTCC 180830 29 100.0 32 ............................. TGCAGACGCGGCACTTTTACCCACGCTTGAGC 180769 29 100.0 32 ............................. ATATTCCGAGCGTTGCCAGCCTGCTGCGCAAT 180708 29 100.0 32 ............................. GCGGCGGCGTTAGAGCGCGCGCCAGCGTTTTC 180647 29 100.0 32 ............................. ACGGCATCTGCGAAATTCATGTTGCTAAATAC 180586 29 100.0 32 ............................. GCTGCGTATAAAGGCTGCAGACCGGAGAGAGG 180525 29 100.0 32 ............................. ACTGCGATTCGTTGACGATTATTCCTCCGCGA 180464 29 100.0 32 ............................. CGTTATTTTAAAAGCTGACGGCGAAGTGGTGG 180403 29 96.6 32 ............................A GCGCACCCGAACCATTACGGGGCTTGCCATTC 180342 29 100.0 32 ............................. GCCGAGTTCGTCAATGCTATGAATTTTATAAC 180281 29 100.0 32 ............................. CCGGACAACGCGGTCAGTACAGATTTCATTGG 180220 29 100.0 32 ............................. GGCAGCGAGGCGCAGATCCCGCAGCTTTACCA 180159 29 100.0 32 ............................. TTCGGCCAATAACCGACTATGTGAGGGACTTT 180098 29 100.0 32 ............................. CCCGATAAATTCACTCTGTGTCATACGGTGAT 180037 29 100.0 32 ............................. GCATCGACGCCCGTATCGTTATCGACAAAATA 179976 29 100.0 32 ............................. ACACGTCGTTAGGTGTTCCGTACTGGGAGAAA 179915 29 100.0 32 ............................. CCAGGCGACCGTATCTGGGTGCGTGAAACGTG 179854 29 100.0 32 ............................. CCGCAAGCCGTATCAACGAATTACTGCTCGAA 179793 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 179735 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGTGATAAAGTTGGTGAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGTACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 67081-67353 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWGN01000012.1 Klebsiella pneumoniae strain VRES0208, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67081 29 100.0 32 ............................. AGTAGCGCGTCAGCATCTCCAGGTCGTCCTTA 67142 29 100.0 32 ............................. GAGTACACGGAGGTGAAGCAATGATTACCGGT 67203 29 96.6 31 ............................A ATAGAAAAACTGGCCGAATATGAGCAGCCAC 67263 29 100.0 32 ............................. GATTTTAGCGGATACACCAAAACTCGCCAAAA 67324 29 100.0 0 ............................. | T [67351] ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTTCCCCTGCGTGCGGGGGTTATCGG # Left flank : GGGGGGCGGCGATCAGGTTTTTACTCAAAATGGGTTTTACGGTCGGCCTTGTAGGGCATCCCGCTGTAGGTAAGTCATACCTGCTCGCCCGGACATTGCCAGAAGGTTTTATTGACGGTCGAGAACTGGTGGCGAAGAACAACTGGGAAACGCCGGTGCCATTCCCTTCCGACAAGATCCCGTCCGGGCCTGTAGGCATTGATGACGGAAATGTGTTCGGGAATGAAGCTTTGTTATCGGCAGCGGCGACCCTGAAAAAATGCGGCGTTGTGTTTACTGCTCAACGCCTGAAAAATGCAGAGAGCCTCGCGACAAGTTTAATGGCGCGGCGTGTGCTGATTTTTTATATCGGTGAGTATGAGTATTTTAAGTTTGAAGTTGCGGCACACTATGATCGGCGCAGGAAATCCTGAACCTGCGGAGGTGATTTTTACGCCTCAGAATCTGGTGGAAAATGAATGAATAGAATTTGCATTTGTAATCAATAGTATATAGTTAGA # Right flank : GGCTATATCGAACGCGTAACTGGGAAGTGATATTCAGAAGAAAACATTCGCTCGCAAAATACCTATAGCTAAAACCGGTTCGCCGGTTTTTTTTTGTGCCTGCGGTATTCGGCATATCTTTTGCGGGAAGGATAATAGATTCCTGCGAAACTATTTGAATAAGGTGACAATAATGGCTCAGGTTCAGAGAGGTAAAACGGTTCCCGTTCGGCCATCAGCGACGTATTTCAGCTATAGCCCCGACGACGGGTATGAGGAGCATGACTCCCCGGAGAAGGCAAAAGCTGCGGCAGACGCTGCAATTCATGCTTATCGGGGTGAAGCATGTGATGGCTGGCCTGATGAAGTGACCGGCGTTACGTGGGGTGTGGTGGCACAACGAGCGGCAAAGTTTGGCGAGCGTAAGCGCACTAATGAAGACGCGCATCTTTCTCCAGAAATTCAAACGGTCTGTGACTACTATCTTGCGCCGGAAGTGACCGTACCAGCCTCACTCCCCT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTCCCCTGCGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 104492-105006 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWGN01000012.1 Klebsiella pneumoniae strain VRES0208, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 104492 28 100.0 33 ............................ GCTTTGTTAATCTTCAGGAGCCTGGCAGCCTGA 104553 26 89.3 38 ...........--...T........... GGCCAGACGCCCAACGCACTCTCGCCAGCTAAGCCTCA 104617 26 89.3 33 ...........--...T........... GGGAACAACGGACTGAGAATAACGCATAATGGC 104676 28 96.4 33 ....G....................... GTTCCTGTTTGGTTTCTCGATTATTTCCACCTT 104737 26 82.1 33 ...........--..TT.........T. GCTTGTCCGCAATCCGGCGTTTCATCGCCGTTA 104796 28 89.3 33 ..........G..T...A.......... AGGATGGATGTCCTGCGAAATTACAGCGTGACA 104857 28 96.4 33 ............T............... ATAGCAATGAACTGTATCACGATTGCCACCAAA 104918 28 100.0 33 ............................ GAGCTGCATAGTTATATCCTGTGTTATTAACTA 104979 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 9 28 93.6 34 GTGTTTCCCCTGCGTGCGGGGGTTATCG # Left flank : TAAAGACACAAAGGCGGATTTGCAGAAAAAAGTTAACGAACTGGATGAAAAAATTCAGTCTCGTAAGGATGAAAAATCCGAAGCCCGTGAGTCCATTCGTCGTCCTATTGACCCCTATGAAGCATTCATTGCCGGGGCTGAACTGAATCACCGAATGAGCATTAAAAATGCCACTGACGAAGAAGCTGGCCTGTTTATCTCTGCGCTTGTTCGTTTCGCTTCTGAACCACGTCTCGGCAGTCATGCGAATCACAACTGCGGGCTGGTGGAAGCAAACTGGAGCGTCACGACATGGAAGCCGGGTGAACTCACGCCAGTCACCCTCGGCGAGATCAGTATTAGCCCTAGCGGTGTAAAAATCGAAGGTGAAGAGCTGTCCGCTATGGTCGCTGCTTTTGCAAAGGCAGATGGATTTGATTTTAAAGCCCGGTGATGCATAATTTCTCGGTAGGAAAAATATGAACTATTTTTCCTATTTATATCAATGCAATATGATTAGA # Right flank : GGCATTTTACGCGATGGTTGAAGAAGCTTGTTGAATGTTTCCCCTGCGTGGGGTTATCGAGAGACGCAAACACGGCACTACAGCAACGAGAGGTATTTTCCCTTCTTCGCGGGGTTAACGATGTTGTGGGCGAAGGAATATGCCATCAATAGCATTCCCCTTCTGGGGGTTAACGGGCCGTAAGAAATGCAAGTATTGATACATCCCCTTTTTTGGGGTAAACGCATGGTAAAAATGAATAGGATTTTTTAGCGAGAAAATCAGAATAGGATTTAGCAAAACAGTTTTATTGCTACAAATACCCTTGTTGGTTAAAATACATACTGTATAAACCAACAGGGGTATCCGTTATGGATTTAAGAAAGACATTTGAACAACTTACCGACGAACTGCTTGCGCTGAAAAAGTTGATCAGCGAAAGCTCGCCGTTGTTTGCTCGTGTCTCGGTAATCCCCCCGGTTTTGCGCGGCGCGGAGAATGAGCCTGTTAATGAGATTGTT # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTCCCCTGCGTGCGGGGGTTATCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //