Array 1 5581-6889 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBQU01000025.1 Salmonella enterica subsp. enterica serovar Cerro strain NY_FSL S10-1742 NODE_25_length_36405_cov_43.2856_ID_3769, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5581 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 5642 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 5703 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 5764 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 5825 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 5886 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 5947 29 100.0 32 ............................. CAAAACGGCCTGGTAAGCTGGAATGACAACGC 6008 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 6069 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 6130 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 6191 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 6252 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 6313 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 6374 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 6435 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 6496 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 6557 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 6618 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 6679 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 6740 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 6801 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 6862 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23596-25089 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBQU01000025.1 Salmonella enterica subsp. enterica serovar Cerro strain NY_FSL S10-1742 NODE_25_length_36405_cov_43.2856_ID_3769, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23596 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 23657 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 23718 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 23779 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 23840 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT 23901 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 23962 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 24023 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 24084 29 100.0 32 ............................. TCGGTCGATCTGCATATCGATACCCGCGGTTA 24145 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 24206 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 24267 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 24328 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 24389 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 24450 29 100.0 32 ............................. GATTGGAAAACCAATCTCTTTGTTACCACATC 24511 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 24572 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 24633 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 24694 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 24755 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 24816 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 24877 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 24938 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 24999 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 25060 29 93.1 0 A...........T................ | A [25086] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //