Array 1 108220-107519 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAPL01000004.1 Salmonella enterica subsp. enterica strain CFSAN058597 SRR6919992_NODE_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108219 29 100.0 32 ............................. TGTCCAGGCGATTTCCTGGAACCTGGCATTGC 108158 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 108097 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 108036 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 107975 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 107914 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 107853 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 107792 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 107731 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 107670 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 107609 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 107548 29 93.1 0 A...........T................ | A [107521] ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125787-124355 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAPL01000004.1 Salmonella enterica subsp. enterica strain CFSAN058597 SRR6919992_NODE_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125786 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 125725 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 125664 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 125603 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 125542 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 125481 29 96.6 32 ............................A TGCCATCGCCGAGGGAGGGCCTCCAGATCATC 125420 29 100.0 32 ............................. CTGAATAATTCGCCGTAGGTAGCCAGCGCAAT 125359 29 100.0 32 ............................. CCGTCGCTGACGAACTGACTTTTCTTCATCTC 125298 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 125237 29 96.6 32 ............................A CATTGGGCACCGTACCGTTGCGAATACGTCGC 125176 29 100.0 32 ............................. CCAGTAATCACAGACTTTCTCCGTGTCTTCAC 125115 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 125054 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 124993 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 124931 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 124870 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 124809 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 124748 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 124687 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 124626 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 124565 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 124504 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 124443 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 124382 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //