Array 1 2166881-2167273 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBGA010000001.1 Klebsiella quasipneumoniae subsp. quasipneumoniae strain mS1O1 scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2166881 28 100.0 33 ............................ CATGTCACTATGATTTACCACCGGTTCACCCAT 2166942 28 100.0 33 ............................ TACCGACTTTGGTCGGCCTTATCTACCCCGAGC 2167003 28 100.0 33 ............................ CACGATTGACCAGGACGACGGATCCAGCACACG 2167064 28 96.4 33 ..........T................. CATGCTCGCGCAGCGCCAAACCATCAGTTATGA 2167125 28 100.0 33 ............................ CTGGATGCGTCAGCATATCATTGACTCCACATT 2167186 28 96.4 33 ...........A................ CGCAGAAAGCACGCTGGCTTCTGCTATCAGCGC 2167247 27 96.4 0 .................-.......... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.5 33 GTCTTCCCCACGTGCGTGGGGGTGTTTC # Left flank : GTCAGCGTCGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTTGACGGCGCGGCGCAGGATAACAGTCTCCAGTTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGCACCGAGGGCGACGACTTTCCGCTACGCGCCTACGGAACCGCGCTGCGCGATGCTGAACACTGCCATCTGACGCTTCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTACGCGAAGCCACGGAAGGCAAGCGTCAGGTTATAACGCTACGCTATGGGATGACAAAAGCACTTTGCGTCCGGCTATGGGCCGGGCAGGCCAGTAGGCTAGACCGATCCTGGTCAGCAGCCAGTCGACGGTGGTGACATTGAGACAATCTTGTCCGCTGGATGAATGTTGAAGCTGACGCGAAAACCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATAAGCTGCTAAACACAATATGCTGGT # Right flank : CACGTGACCGTTTATCTGATGCAGACGCATCAATGCGTGACATTATGGTCCTTAACGTACATCAATGTCTTCGATATTTCGTTTAGCCAGCTCCGTCCTATATAATTTTTATATGATTTCACTTATAAATATTCGTGAACTATGTTTGTTTTATACTTTCTAAAATGACGTATAAAGCGTTAGGCTTTATGACTCATCTGGAGATATCGCTCTTCCTATTAATTATTTTTAATTTTTTATATTATTATTTTGGGTTTTTATAATAAATTCAGTCTGTTGTGTGTGCTTTTTTATTTTATAAAAAGTTATTTATAAATCCCCCTATTTTTAGTATTAATAAAGGGCACATGATTTTTAAGGAAAAATTCCATGAGGCGCTTAACCAGGGTTTCGCTTCAAAATCAACATGCCACCGCGGCGATAAGTTATGAAAACTGCCCAGCGAAAACCCGAAGGTTGAATGATGGCCGCGTGGTGCAGGGACGCTCGTTGTTGAGCCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2175983-2176499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBGA010000001.1 Klebsiella quasipneumoniae subsp. quasipneumoniae strain mS1O1 scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2175983 28 100.0 33 ............................ CTAATAGTTTGAAAGTTACACGGTCTACTCTGG 2176044 28 100.0 33 ............................ TGACACAACTCATCGAGGCCAGACAGGCCTTGC 2176105 28 100.0 33 ............................ TCACTGGCTTCAAGCCCGCACAGATTTGCTATA 2176166 28 100.0 33 ............................ CAGCGACGCGAAGCCGAAGAACAGGCAGAGAAA 2176227 28 100.0 33 ............................ TATTCCCATTATCCCCAACAGGTTGCTCCTGGA 2176288 28 100.0 33 ............................ CGCTATTTATGTTCCGCGCGTCATGAATTACAG 2176349 28 100.0 33 ............................ CCAAAAACCTCACTGCAATGTTGTCGGGCTGTT 2176410 28 100.0 33 ............................ GGTCAAAACCGCGGCCCCGGCAACTCAACGGGA 2176471 28 82.1 0 T......A....TC..........C... | C [2176492] ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAGCGGCTCTGTATCGATCTGGCGTTTTCCCTGTCGAGGGAGATGGCGGGTCGATATGATAAACATAAAGTTTCTGATGCATTCAGAAAACGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCCGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTTCGTGGGCGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTGTTCGTCTCTGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTATCTGATGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTTCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGGGAGGTCAGAAAGCCGATTATTGAGCTCAGTGGGTTACAACTGATTATTGAAACCCTAAAACTGTCGTAATTCGCGGATATAGTGGTTGAGTTGATGCTCTTTGACAATATGTTGGT # Right flank : CCGCCCAGCTTACCCCGCCAGATGGCACACGGCTTCAATATTGTGCCCGTCTGGCGCGATCACAAAGGCGGCGTAGTACCCGGCGTGGTAGTTGGGCCGTAACCCCGGCGCGCCGTTGTCCTTTCCTCCGGCGGCCAGCGCCGCCTGCCAGAAGGCATCCACCTGCTCGCGGCTGTCGGCGCGAAAGGCGATATGCAGCGGCGCCGGTTTGTCCGCACTTTGATAGAGACACAAAGAGACATCCTCGCTACCCGCCAGCTCTGCGCCGTAGGTCGGCTCGCCTTCATCGACCAGCGTTACGCCAAGCGGGGCCAGAGCCTGTAAAAAGAACGCTTTGCTGGCGGCATAGTCGCTGACGCCGAATTTCACATGATCGAACATCTCTTCTCTTCTCCTGTGGATGGGGATCGCCAGCCGAACGCGTTAGCCGGGAAATAGATGCAAAATAGTTAACAACGGGTAGTAACTTTTTTAACAGCTCAAAATGTTTAATTATTCCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25228-26651 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBGA010000002.1 Klebsiella quasipneumoniae subsp. quasipneumoniae strain mS1O1 scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25228 28 96.6 32 .....-....................... TCCGGATGATGACATTTCGGGTGATAATCATA 25288 28 96.6 33 .....-....................... GGGGCCAGCTCCCGGACGAGAAATGTGACGCCC 25349 28 96.6 32 .....-....................... ATTCCGTTCATAATTTTGTAGCTGCCCGCTAT 25409 29 100.0 32 ............................. TTCTCTCCGCCGGGCAGTGTGATGCCGGAGGG 25470 29 100.0 32 ............................. GCAGCGGCCTGACGATGATCGATATGAACGGC 25531 29 93.1 32 .............A...A........... TGAAATTGACGAGTGGATCAATCAGCGTATTG 25592 28 89.7 32 .....-......TA............... TCACTTTTGCGTCGAGCCAAGTTATTATCTCA 25652 29 93.1 32 ............TG............... TGAGGCTGCTGACGGAGAATTGGGACCTGTTC 25713 29 96.6 32 ...............T............. TGACTTTTGTGAAATTTTTTTCTTAAAAAACT 25774 28 82.8 32 ..........A..AC.T....-....... TTAATGTTTTGTTAATTTATAAGTGTGGTGAA 25834 29 93.1 32 .........T...C............... CGTTCGGCTAGGGCGTTGACGGACGCATTTTC 25895 28 86.2 32 ...C......-..AC.............. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 25955 29 100.0 32 ............................. AACAGTGGGATTTCACCTTTTAGGTTGAGTCA 26016 29 93.1 32 ............TA............... TCACTTTTGCGTCGAGCCAAGTTATTATCTCA 26077 28 93.1 32 ..........-..A............... GCCATGCAACGTCTGAACGTCCGAAACATCCC 26137 29 96.6 32 .............A............... AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 26198 29 96.6 32 .............A............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 26259 29 100.0 32 ............................. TCGAAGGCAACCACCAGGAACAATAAAACCCC 26320 29 89.7 32 .A..........TG............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 26381 28 89.7 30 ..........-..G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCA 26440 29 93.1 32 .............A............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 26501 29 93.1 32 ............TC............... TTACGCATTGTGATCAGGATTCGCTTCAGACG 26562 29 93.1 32 ............TA............... TCGCCCAGTCCAAAGGGGATGATGCAGGATTG 26623 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 94.3 32 GTATTCCCCCCGCTTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTACGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTACATTAATCCGCTTTGCAGCCGAGCCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTGAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCGGGTGGATTTTAGTGGTGCTATTTATTATTTTATAATCAACCGGTTATTTTTAGA # Right flank : GGGCATGAGCGCGAACCACTGCGAGAGTGTGGTGTATTCCCCCAGGGCGAGATCGTGAACATTTTGTTAAAAATTAAAAATAGTTTTTTGCCTACAAAACAAATACTTATAGGCCTGTGATATGCAGTTAACTTTATAGTCAGGATCGCCTTCACACTTTTTAATCGTCACTGCACGTCATTTCAGCTCAAAAAATGCGCATGAAATCCAAAAAATGATAATTTCCATGATTTCCATAGTTAACAATTTGCTCACATCCTCACCCTGAAATTTGACCTGGTGATCCGGCTGTGATCTCATGCTCCTTTTCAGGAGTGCTCTCATGTCTATTGATGCCGTTTTCGCTCAGTTCTTCGACAATATTCACGACCCTCGCCAGCATGCCAAGATTTATTATCCCTTCTACGATGTCCTGTTTCTCACCGTCTGTGCCGTGATCGGCGGGGCTGAGGGCTGGGAAGATATTGAGGATTTCGGCGAGGTTCATCTTCCCTGGTTTC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCTTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.90,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [14-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //