Array 1 193744-194993 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIFO01000001.1 Pseudomonas stutzeri strain KOL14.W.495.96 Scaffold_1_length_265509_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 193744 29 100.0 32 ............................. CCAGTGGGTGGAATTATCGCTACATCCGAAGA 193805 29 100.0 32 ............................. CGACGACACGGCGTCGGGCACTTCCACTGCCG 193866 29 100.0 32 ............................. CCTCTTGACCAGCAGTGTATCGACAGGAAGGG 193927 29 100.0 32 ............................. TTGTCCAGTGCCAATCAACTGAGTTCCAAGGC 193988 29 96.6 32 ............................C ATGGTCATATCCAGGCCGTCGACGACGAATAC 194049 29 100.0 32 ............................. ATCCTCAACCGTTACCGCAACGTGCCAGAGGC 194110 29 100.0 32 ............................. GCGCACGTTTTTCGTTACGTCTGGGTGTTTGA 194171 29 96.6 32 ............................T CAACCAAATCACGGGCAAATGCGGCAATTTGA 194232 29 100.0 33 ............................. TTTTTCACGGACCGGGAGAAGGCCATTGAGGCG 194294 29 100.0 32 ............................. CGGGGGCGCAGTTGCGTCAGACCTCCTCAATC 194355 29 100.0 32 ............................. ACTCACGTCCTATACGGCACCGCAGCCGGTGG 194416 29 100.0 32 ............................. ACAAATCGAGCGGAACAGGTTTAATCCAGGAA 194477 29 100.0 32 ............................. GCAAAGACGTATGCCTTGGACTTCATGCGGCC 194538 29 100.0 32 ............................. GTTGCCTCCGACATGACTGGCCGCGACAAGTC 194599 29 100.0 32 ............................. CGAGCTGGAGGATCTGCGCGAGTTCCATGAGG 194660 29 100.0 32 ............................. ATCCGCATGCGCCGCTCGATCCGACGTTGATC 194721 29 100.0 32 ............................. GCACCGTGCTGTATCAGACGCTGGACCTTCAG 194782 29 100.0 32 ............................. ATGATGGATCGCAGCCTGTTGATGGCGGCCGG 194843 29 100.0 32 ............................. AACTGACATGGACAGACAGGCTGGGCAACGAG 194904 29 100.0 32 ............................. CAGCCGGCGTAACGGTGAGGGGGTGAGGGATG 194965 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.7 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : TGGGCGGTGCCGGCTATGTCGAGGACACCATCCTGCCACGGCTGTACCGCGAAGCGCCGGTCAACTCCATCTGGGAAGGCTCCGGCAACGTGCAGTGCCTGGACGTGCTGCGCGCCCTGTCGAAGGAGCCCGGCGTGCTCGAAGTGCTGTTCGCCGAACTCGGCGACGGCCATGGCGATGTGCGACTCAAGGCGCACATCCAGCGCCTGAAAGACGCCTTCCGCGACACCGACGACATCCAGTACCGCGCCCGCCAACTCACTGAAGACGTCGCCGTTGGCCTGCAGGCCAGGCTGCTGCTCGAAGCGGGCAACGCCGCCGTCGCGGACGCCTTCATCGCCAGCCGGCTGGAAGGACATGGACGTGCCTACGGGACGCTGCCGCGGGGGTTGCAGGTGCAGGAAATTCTGACGCGCTCAGCCGCCAACTGACCGTATCGCCGCTTCGGTAGTTTTTTAAGAGCTGAAATAGCGCCGTCGAATCAGTAGGTTACGATTGGA # Right flank : GCGCCCGGTTATCGGTATCGACTACGGTACCCAGGGGGATGAGCTGGACCTCAATCGTCGCCAGGTTGGCCTGTTCATAACGCGGGTTAACCGAGTGTGCTCCGAACGCGGAAGCCCTCGTATGCTGGGATAATCAGACTGGCTCGCTCGGTAGAACCATTGAGCGGCGTCTCCGGCAGCGATAGATATGGCCAGATTTGCTACATATCGGGGCGCTCATCCGATGCGCGGTTGGCTTGCCGTCGGAACGGACAGTCAGTGCGCGCATATGGAATATCGACGCCCTGGCCTTGCTAGCCAAAGGCACCTGCGTGCCCCTGTCATAGCAAAAACTTTACCTGTCCGCCCATACAGGCCTTTTAAGCGCGGCATGATGCGTGGTTAGCTGTAGATAGCTATTTGATATTGAGGCGGGATATGCACAAGGCGTGCTCGTTCAAGTTCTCAGGGCTGTCGGGGCCAGCTAGAACGCTTTGGGCTAAGAGCGGCGAACCGACCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 204738-206718 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIFO01000001.1 Pseudomonas stutzeri strain KOL14.W.495.96 Scaffold_1_length_265509_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 204738 29 100.0 32 ............................. CGAGGATGTAGAAACCACAGTCTGACTATCCG 204799 29 100.0 32 ............................. AAGAAGCCATTGAGTTGCGCTCGCAACCTGCT 204860 29 100.0 32 ............................. CAGGCGCTGTAAAGAAGCGCGTCATGGGAAGG 204921 29 100.0 33 ............................. TGAACAATATTCTCAGCGCTACCGTTATAATGC 204983 29 100.0 32 ............................. CTGGCCGCGAACAGTGCAAAGGTGGAAATCAG 205044 29 100.0 32 ............................. GAGCCGAACTAGCCATGCAACACCCGTATGCC 205105 29 100.0 32 ............................. CGCAGTCATCAGGAACTGCCAGCCATAGCTGG 205166 29 100.0 32 ............................. TCCCAGCTTATCCGGCAGATCTTCGATAAGTA 205227 29 100.0 32 ............................. TTCCTACGATATATCGAAGGCCGACGAATGGC 205288 29 100.0 32 ............................. ATCAACCGAGCGATCCGTGATCTCGTCCAGGT 205349 29 100.0 32 ............................. GCGATAGCAGAGTTCGAGGCGTGGTATCGGGA 205410 29 100.0 32 ............................. CACGGTAATGTGCCCTTCGTGGCCGATGACCG 205471 29 100.0 32 ............................. TCGAGTTCAGCTATCGGTACTCCCGCCTGTGG 205532 29 100.0 32 ............................. TCCGCAGCGAGACCGAGAGTGCCCAGGTCGAC 205593 29 100.0 32 ............................. TTGAGCCGACGCACCACCGCTTCTTTGGCCGG 205654 29 100.0 32 ............................. ACCGCTGGATCTGCGCACCAGCTGATTGCCTT 205715 29 100.0 32 ............................. TGCCGAGGGCTACGCTTGACCGCGCTACAATC 205776 29 100.0 32 ............................. TGCGGCGATTTCATCCATGCCGTCGGGCGATA 205837 29 100.0 32 ............................. CCGTTGAGCGGCACGGCGTTCAGTGGCGAGGC 205898 29 100.0 32 ............................. CCACCCACTGTCGATTGCACGAACGCGGTGGT 205959 29 100.0 32 ............................. CGGCCGTCTGAGATAGCCCTGCCGCTTCGCGG 206020 29 100.0 32 ............................. CCGCCGCCTTGAGGGCAGCGAGGAAATAGGTC 206081 29 100.0 32 ............................. GCCGCTGGCCGCACAGATGCGCTCGACCACGC 206142 29 100.0 32 ............................. GGCGGCTTTCGGACTCATTGGCTTGGCCTCTG 206203 29 100.0 32 ............................. CACGCCCAGCGGTTCCATTGAGCTAAACATCG 206264 29 100.0 32 ............................. GAATGAGCAAGGTATTGGTTGATCGGGAGCTG 206325 29 100.0 32 ............................. TTGATTTTGTTTCCTATCTGGACTATCCCGCG 206386 29 100.0 32 ............................. GCAGAGGACGACCCCCACCCGCAATACCTGAC 206447 29 100.0 32 ............................. GGATGCGGCGGGATGTTATGCGGGGTGGACAG 206508 29 100.0 32 ............................. TCTATCAGGAGAGCCAGAGTTTCGAGCGAAAG 206569 29 100.0 32 ............................. GGTCGGCACCATGCTCGCCAGCAACTGGCTGG 206630 29 100.0 32 ............................. ACCGAGGTTCGATTCACGCAGCGCCGCCGGAT 206691 28 86.2 0 ...........T.....-A......G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.6 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : GGCGCGGATCATCCCACTGATCGAAGACGTCCTGGCCTCTGGTGGCATCAGCCCGCCCGAGGCTCCGCCGGAGTCCGTCCCACCGGCTATCCCCAACCCGGACAGCCACGGCGACGCCGGTCACCGGGCGAAGTAAATGACCTTCCTTGTCGTGGTGACCGAGAACATCCCCCCGCGCCTGCGCGGCCGCCTGGCCATCTGGCTGCTGGAGGTACGAGCGGGTGTCTATATCGGCGACGTGTCGAAGCGCACCCGCGAAATGATCTGGCAGCACCTCGAAGCCGGCTGCGAGGACGGCAACGTGGTTATGGCCTGGGCCAGCAAGAGCGAGTCCGGTTACGACTTCCAAACCCTCGGTTCCAACCGCCGCGAACCCATCGACTACGACGGCCTGAGATTGGTCGCATTCCAGCCACCGCAAGGCTCCGATCTTTAACAAAAAGAATGGTAGATATTTTGTAGTCGATTTTCTTCTTGTAAGACAATCGGTTACGTTTGGT # Right flank : GGCGACGGCAAGCGCCTGGCGGCCTATACCATCGTGTTCCCGCACTCGCAGGGCGAGCCGGCGCAATTCCAGATGTGCGGCCTGCGGGTCAAGTGTCAGTGAGCCGCGCGTGACGCGAAAAGGGCTGACACGACTGCGGCGCTATCGCTGTCATCGAGGAGCAGGCAAGATGCTTCCAACGACTGAACAAGGAATCCAGCATGAATCCAGCCGGTGATACTTTCCGCATTGCCACCAGCGCCGAAGCTGCGGTGGACTACCTTGCCGAGCTCCACGAATCCGCTACCAGGGCGCTCAACCAGGCGCTCAAGCGCTATGTGGCCAGCCGTACCGAGCCGAGCGTCCAGGAGCGCAGCCTGTTCCGCTACCCGCAGCTGCGCCTGACCTATGAATGCCACGGCGAGGTACCGGCTTCGACGCGCGCCTACGCCAAGGTGCAGGCGCCGGGTGTCTACAGCGTGACGGTGACCCACCCCGCGGCGTTCCGCGCTTACCTGCTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //