Array 1 151785-153008 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTXN01000004.1 Ruminococcus sp. AF12-5 AF12-5.Scaf4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 151785 36 100.0 30 .................................... GTTCAAACAAACAGGTAAAGTACAGAATGA 151851 36 100.0 30 .................................... GCATCAATGTGAATATGTCTTTATTTCGTT 151917 36 100.0 30 .................................... CATGCTCGCCACTTATGTGCCATATCGACA 151983 36 100.0 30 .................................... AGATTCAGGCTCAGATTGACAGAGCTACAC 152049 36 100.0 30 .................................... CATTTAACGAAAGCCCGTTCCATACAAAGA 152115 36 100.0 30 .................................... GGTGTTCCCGGAACGGTATTCCGCGTAAGC 152181 36 100.0 30 .................................... TAAGAGAAGATATGCGTATGGTGGCTTTCC 152247 36 100.0 30 .................................... CATGCTGCTCCTCCATTCACTAATCTGTTG 152313 36 100.0 30 .................................... AACAGACGACGAAATCGAAGAAATGATGAA 152379 36 100.0 30 .................................... GTGGAAAATTCACAGGAAATAACTACGGGT 152445 36 100.0 30 .................................... TTTAAAGAAAGCATCCGCATATGTTTTACC 152511 36 100.0 30 .................................... CGTATGCAGTCTTTTCTTTTTCTCCCTCTT 152577 36 100.0 30 .................................... GTGTGGATGTCGGACTTTTTACCTAGTTTC 152643 36 100.0 30 .................................... ATGGGATTCCCGGTGCTTCCTGCCTCCGTA 152709 36 100.0 29 .................................... TGAGCACACTTGTGTCTTCGTCTACTGGT 152774 36 100.0 30 .................................... AAAGAGAATGATAGATGAGATCGTCAAGAA 152840 36 100.0 30 .................................... TGAAGAACGTAGAAGAATTCTCGAAGAAGA 152906 36 100.0 30 .................................... AAGAAAAATCGGTATCCCCCACTGACATGA 152972 36 94.4 0 ........C....................T...... | T [153006] ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.7 30 GTTTGAGAATGATGTAAAAATGTATGGTACTCAAGC # Left flank : GATATTAAATAAGTTGTATGCAGAATTGGAGCAGTTGTCAAAATCGGAGTTGATGTATGTAAAAACACTTGAATTAACAGGAAAAATACAGGAATATTTGTTGGAGTTAGAACAAAATACAGAATATGTTTTGGAATTTGATATGGAACTGGATATGTCTGCATTATTTAAATCAGTAGGTGTTCGGTATGAAGTACAGGAAACCGATTTTTTTGAACAAATAATACGTTATATAAAGATAGCGGTAAATGTTTTAGCGACAAAAGTATTTGTTTTTATTAATCTCCGAAGCTATTTAACAGATTTGCAAATGCAGGAATTGATTAAAGAGATTTCTTATCAGGATGTAAAGGGATTATTTATTGAAAATCATGATAGAAGTTGCATGGAAGGAGGAATGCGTTATATTATAGATAGAGACGGATGTGAAATTTATTGAATATTTAAGCTTGAGTACCTTGTTTTTATGCCGATGATAGCATTTCATTTTTGAATTTGAG # Right flank : CTCTTACAATTGTTTGAAATTATGCGTGTCACTAGTAAAGAGATAGCAAGTGGATTTCTGGAATTTGTATTTGAAAATAATGATAATAAGAACAATTTTGAAAATAAAAGATTAGATTGAAGGCAGGTGATTGAATGGTTAGTAAAGCGTTTTTTGGTGAAAACAAGAATGTAGAATTCAAGAGAGAGATTCCAAGTAAACATGAAAAATTTCTGAAAGATATTATAGCATTTTCTAATAGTACAGGAGGTCAGGTTATTGTTGGGATTGAGGATGAAACTTGCATTGTATATGGAATTGGTGAACAAAGTCCATTTAAATTATCAGATTCAATATCTAATATGATTTCTGATGCGTGTACACCTCAAATAGAACCCGATATTTCAATACAGACAATAGAAGATAAAACAGTGCTTGTAATAGATGTTGCACCCGGAAAATTCAGACCATATTATTTAGCAAATAAAAATAAGGAGACCACTTCTTATATCAGAATAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAAAAATGTATGGTACTCAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 10455-8768 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTXN01000013.1 Ruminococcus sp. AF12-5 AF12-5.Scaf13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 10454 32 100.0 35 ................................ TAGAATCAGCTCAGCAGACACTCAATCAACTTCTG 10387 32 100.0 34 ................................ AATCAGCTTGGATTTCATGTGATCACGCTCCTAC 10321 32 100.0 34 ................................ AAAAAAGCACCGGCAACGGCAGAGTGGGAAGTTC 10255 32 100.0 34 ................................ ATAAAAATACCGAAGATATAGCTAAAGTAGAAAA 10189 32 100.0 33 ................................ CTAAGTATTCGTATTTGTACGAAAATTCTAGTC 10124 32 100.0 33 ................................ ATAGTTACCTCCGCTGAATGGCGTGGAGATAAA 10059 32 100.0 36 ................................ TCTTGCTAAAGTGTTGTGAGTAGTGTTCAAGCGCAT 9991 32 100.0 36 ................................ GCATCATTACTTGATACAGTACTCGACAAGCTGAAA 9923 32 100.0 34 ................................ GATTCCATGCCACCAAAGGACTGGCAAGAAGCCT 9857 32 100.0 34 ................................ ATTTACAACATGGGTAAAATCGTAGGCTCGTTCG 9791 32 100.0 36 ................................ ATCGATGCAAACGATATTAATTGTGCAGAAGATGTG 9723 32 100.0 34 ................................ ATGGAGCAAAAGGAGAAGTTGTAACACTGGACAG 9657 32 100.0 35 ................................ ATCAATCAATGTTTTTGCAATCTTGAACCTAACAT 9590 32 100.0 34 ................................ ATATAGTCCAATAATAAAAGTATAGGCTAAAGGC 9524 32 100.0 33 ................................ GCTACTCTTAACAACTCTGCTTCAAGTTGTTTG 9459 32 100.0 33 ................................ ACACAGCCAGTAATAATAGACAAACATAATAGT 9394 32 100.0 34 ................................ TTCTTTACCTCTCTAGGACTCACAGTTTCCTTTT 9328 32 100.0 34 ................................ CAACTGTGTATATGAACTGGATTTAGAGCCAGGC 9262 32 100.0 35 ................................ GCATAAAACCCAAGAAGCACCTGCATGATAATGTG 9195 32 100.0 34 ................................ ATAACTTCTTGTATAATATCTGTTACGTCCTGTA 9129 32 100.0 34 ................................ AAGGAAGTTGCAGATATCAAAACATCTGATCAAT 9063 32 100.0 33 ................................ GATAAGGCAGTACGTGCAGTGGAAATGTGTCAG 8998 32 100.0 33 ................................ ATCGAAACGCTTCATCCATTTCAAGAGTGTGCG 8933 32 100.0 34 ................................ GATGTTGGATACGGTCGTGTTGGTGCAAGTTGCC 8867 32 93.8 37 .........C......A............... CTTGAAGAGTACAGTGTTAATCATCGTTGTAGCAATA 8798 31 71.9 0 TGGT..T....-...G...G....A....... | ========== ====== ====== ====== ================================ ===================================== ================== 26 32 98.7 34 GTCATCCTCTTCGTGAGGATGTGAGTTGAAAT # Left flank : AGATGAATACCCTCCGTTTTTCTGGAAGTAGGTGGAAAGATGTTAGTTCTGATTACATATGATGTAAATACTCAAACAGCAGCGGGAAGAAAACGATTGAGAAAAGTTGCAAAAGAATGTACTAATTATGGACAGAGAGTACAGAATTCGGTATTTGAATGTCAAATGGATGCAACCAAATGTAGACAAGTAAAAAATATTTTAGAGAACATTATAGATAAAGAGGTAGATAGCCTTAGATTTTATTATCTGGGTGAAAAATATAAAAATAAAGTAGAGCATATTGGTGCTAAGCCTGGTTTTGATGTTAAGGATACGTTGATATTCTAGTGCGAATGATAAGTGCACATAAATTTCCTAGGACATTCGCACCAAAAAAAGGAGAAAACTAGGCTTAAAAATATATGTGAAAATGAAAAAAGATATCAACAATAGATATAAAATGTTTATTGTTGATATAATATGCGATTTTAAACAGATTATTTTTGTTTAGAATTGCT # Right flank : ATCCTTGATAGTCTTTCTCAGCTTCGCGCGAAGGAGTTACTATTATACATCATTTAATTTGAATATTAAACTCAATTATCGAAATTTTAAAGGAAATTTTTACATGTGTTCTTAGAAAAAATGAACAACACCTAGTAGTCTCCCCGATTTTCATATGGTATTTGAATGTAGAATAAAGTTCCGCAGTAATAATAATAGATACAATTAACAACATAGATGATATCTAGATTTTAACTGTCAAATTCCTGATTTGGCTATAAAAGTATAGATGAAAAGTGATTTGAAATTTCATTTTTGAAAAATAAATACTATAATTAAAGAGCTGCTTGTCACTCCTATATAAACGCGATATAATGAATTTATCAATAAGCAGTCTTTTTAAAGAACGAAAATAAAGTTATTTCACATAGTACTTTTTGATAAAATCAGGACTGCGGAAAAGGAGGACTCAAATATGAAGATAGACATGCACTGTCACGTGAAAGAGGGGTCCATAGACA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCCTCTTCGTGAGGATGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //