Array 1 532-1579 **** Predicted by CRISPRDetect 2.4 *** >NZ_RADO01000402.1 Pseudomonas aeruginosa strain HUM-374 PA2_F6_NODE_313_length_5562_cov_20.4819_ID_625, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 532 28 100.0 32 ............................ AAGCCCTCCCCCTGGAGCAGCCGAAGCGCGGG 592 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 652 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 712 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 772 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 832 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 892 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 952 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 1012 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 1072 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 1132 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 1192 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 1252 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 1312 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 1372 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 1432 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 1492 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 1552 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 533-1400 **** Predicted by CRISPRDetect 2.4 *** >NZ_RADO01000257.1 Pseudomonas aeruginosa strain HUM-374 PA2_F6_NODE_44_length_33378_cov_14.8725_ID_87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 533 28 100.0 32 ............................ AGCTTCAGCAGAAGAGGCAAATACTCCTCAGC 593 28 100.0 32 ............................ TGCGAGCAGCTTGCCGCTTGCGGCCAACGCCT 653 28 100.0 32 ............................ GCGAGCAGTTGCTGGAAGAACAGACCGGCATG 713 28 100.0 32 ............................ ACCACTTCGCCACGAACGGCCAGATAGCGGGC 773 28 100.0 32 ............................ GCATCCTTGAAGCTGGTTTTCTTCTCGACCGC 833 28 100.0 32 ............................ ACTTGGAAGCTCCCATTCGCCGGCTTCAGAAC 893 28 100.0 32 ............................ TCGTAGGCAGCCCGGTACGCTGCCCACACACT 953 28 100.0 32 ............................ GCTGACCTGCCCTCATTGCCAGGGCACCGTGG 1013 28 100.0 32 ............................ CAAATGGGCGTGGTCGCACCCGTTGCCCACCA 1073 28 100.0 32 ............................ TGGCCGCTCGGCGTCGTCTCGTTCGCCACCTG 1133 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 1193 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 1253 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 1313 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 1373 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTTGCCCTCGAACGGCATGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10852-9924 **** Predicted by CRISPRDetect 2.4 *** >NZ_RADO01000257.1 Pseudomonas aeruginosa strain HUM-374 PA2_F6_NODE_44_length_33378_cov_14.8725_ID_87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10851 28 100.0 32 ............................ GGTGACGCTGCACATCGTCGCCGCCGACTTCA 10791 28 100.0 32 ............................ AATCAGATCCCTCGCCGAGCGGCGCATCATTG 10731 28 100.0 32 ............................ AAACTCATCAGGCACCGGCAGCGCAATCAACT 10671 28 100.0 32 ............................ TGGCCGCTCGACCACGCCGGCATACTCACCGC 10611 28 100.0 32 ............................ TCAACAAACGCCACGGCGAACATGAACACGCT 10551 28 100.0 32 ............................ AGCCACTGGCATTCGAATGGGCCGGCCGGGAA 10491 28 100.0 32 ............................ TGGCGAAGGGCAGGGATGACAAGGGACAGCGT 10431 28 100.0 32 ............................ TTGTAGGGCGGCTGGGTATCGCTAACCATCAG 10371 28 100.0 32 ............................ ACCGCAATCCGTCAGTTCCAGTTCCGGGACAT 10311 28 100.0 32 ............................ ACCTCAAGCGGAAAGCAGATCGGCCGGACGTT 10251 28 100.0 32 ............................ TCGACGAAGCCGAGACGTTCACCAGCGCCCAT 10191 28 100.0 32 ............................ TACCACCAGGGATCGCCGTCGAACGGCGACTT 10131 28 100.0 32 ............................ TAACCGCGCCCTGGCGCATACACACACTGGAG 10071 28 100.0 32 ............................ AGGAACGCGACCAGGGCGCAGACGGCAACAAC 10011 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 9951 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTGGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //