Array 1 2966295-2964946 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046898.1 Acinetobacter baumannii strain A1429 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2966294 28 100.0 32 ............................ TGGAACTGTTGCAGGTTATTGGACTACTTTTA 2966234 28 100.0 32 ............................ ATGTATTTCAACATCTTCAACAGAAAGCTGAA 2966174 28 100.0 32 ............................ GTGTACCCTGTTGTGAGAACGCATAATATTTA 2966114 28 100.0 32 ............................ TGATCAAATCGTGGGGCTGTCCAGTACTGCTT 2966054 28 100.0 32 ............................ TTAGTCATATTATAAGTAACTGTAGAATTATT 2965994 28 100.0 32 ............................ TGGCTGACCTGTAATGAGTTTAATTGGCATTA 2965934 28 100.0 32 ............................ AAGCATTTCAGTTGCACCAAGATGAATACTTT 2965874 28 100.0 32 ............................ ACGCTTAAAAAAGCGTTCCCCAAAGCCAGTGG 2965814 28 100.0 33 ............................ CTATGGGGGAGAAAATTATATTAGCTAAAATAT 2965753 28 100.0 32 ............................ TAAACAAAACAAAGTAACGGCTGTAGGTTTTG 2965693 28 100.0 32 ............................ AGATCGCAAACGCTGTTAAAGCCGGGGTTTTT 2965633 28 100.0 32 ............................ AAAAGTGACCTCAAACGACCGAACCATATGAA 2965573 28 100.0 32 ............................ ACAACCAATCAAGGTTAGTGAGAAAGAAGTGT 2965513 28 100.0 32 ............................ TTGTTTGTAGTGTAACGGTTAGCTTATATGGT 2965453 28 100.0 32 ............................ AGTATCTATATATCCTGATTTACCAAGTATAT 2965393 28 100.0 32 ............................ GCAGCCGCATAGCCCGCTTGCAGTTGGTTTAA 2965333 28 96.4 32 ............C............... TATATGGCCTATGGAACTATCCATAGGCCTTT 2965273 28 100.0 32 ............................ AGCCTAATTGCGCACGTCCTTGTTCAACAAGT 2965213 28 100.0 32 ............................ TTGAATTGGCTAAACCTGCATTGATTGCATGT 2965153 28 100.0 32 ............................ AAATTGGGTACACCAATCATCTGGCAGGAAAG 2965093 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 2965033 28 92.9 33 ............CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 2964972 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.9 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2971385-2973332 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046898.1 Acinetobacter baumannii strain A1429 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 2971385 29 100.0 31 ............................. ACTACAACTCCTCCTGCAGATACGCCACCTT 2971445 29 100.0 31 ............................. TGTGACCACCAGTGGAATCCAGTAAATTATT 2971505 29 96.6 31 ............................T TACTAATCCACATTCTTCAGATACATATCTT 2971565 29 96.6 31 ............................T CTATAAGTCATGAAATCAATTTCATGGCTTT 2971625 29 100.0 31 ............................. AACTGCTTTTTTTGGGCTTCCTTCATACATG 2971685 29 96.6 31 ............................T TGTATTTATACGGTTAATAAATCAGTACAAT 2971745 29 100.0 31 ............................. TCTTAAGTTCGAATAAACGTACAAATGGGAT 2971805 29 100.0 31 ............................. TAACGAGAAGCGTTGCGTAGACTTACAACTC 2971865 29 100.0 31 ............................. AGAGCAACTAATTCCCCGGCTGTTACTGGTA 2971925 29 100.0 31 ............................. TAAGAAGTGTGCTCATCAATCTGTGCTGAAG 2971985 29 100.0 30 ............................. AAAAAGGCAGCAATTAAGCTGCCAAATCAG 2972044 29 100.0 31 ............................. TATGATGAAGACTGAAAACGAGAAGGTTCGC 2972104 29 100.0 31 ............................. AGATCTGACCAGCTAAAACATTCTGGTTATC 2972164 29 96.6 31 ............................C GAGGATGATGTTGATTATGTCATTAAGAAGT 2972224 29 96.6 31 ............................T AGAAGCAGAAAATATCCAACTCATTGCTACT 2972284 29 96.6 31 ............................T TGAATGTCATTATCTTCAGTCGCAATGACAT 2972344 29 100.0 31 ............................. CGTCCACGGTAGCGGCGCCAAGGCTGCCAAT 2972404 29 96.6 31 ............................T GTTTTGCTAATATATCAATATCGATTTTCAC 2972464 29 86.2 31 ...AC........C..............T CTCAACTCATTGATTTTTTCTTCTCTTGCCA 2972524 29 93.1 31 ...GC........................ TTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 2972584 29 86.2 31 ...GC......T................T TCAAATGATTTAATGAGCTTGTAGCCATTTT 2972644 29 89.7 31 ...GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATAT 2972704 29 82.8 31 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTTC 2972764 29 82.8 31 ..CGC........C..............T TTATAACCACCAGTTAAAGTATTGACTAAAA 2972824 29 75.9 31 ...GC.G...A..C.AT............ CAATCGGGGACGTGGTCAAAAAGATTATCAG 2972884 29 93.1 31 ....A.......................G TGTTGATGTTGTTGTTCAGATCGTTTTTGGT 2972944 29 79.3 31 ...GC....T..TC..............G ACATGCGAGCTTTCATTTAAATGTGTCATCA 2973004 29 93.1 31 ....G........C............... TTAAAGCATTTTCATATGAGCCTTCCTCATT 2973064 29 82.8 31 ....A......TGC..............T TCGGATCAGTCCAGTCATCATTCTCGTCAAT 2973124 29 86.2 31 T..G........G...............T ATTATTGCGCGACAGAACGTATCAATTAATG 2973184 29 86.2 31 ...GC.......CC............... GATCTATGCAAGATTTATTGGTCTACATTAG 2973244 29 89.7 30 ...TG.......................C AAGCTGATGCTTCCTTATGGTTACAGTCAG 2973303 29 82.8 0 .G..C...................AT..T | G [2973307] ========== ====== ====== ====== ============================= =============================== ================== 33 29 92.9 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCAAGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGTTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAGAAAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATTTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-45] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //