Array 1 940798-941618 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051313.1 Salmonella enterica subsp. enterica serovar London strain CVM 35153 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 940798 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 940859 29 100.0 32 ............................. CTTCCAGTTTTTTCCCTGCCTTTTGGGCGGCG 940920 29 100.0 32 ............................. TACCTGACGCTGATCCAGTCGATCGCGCTGCT 940981 29 100.0 32 ............................. ATTTTCTTTGCGCCCGTACTCAACGTGGGAGG 941042 29 96.6 32 ............................A TCGCCCCGAGGTCGTTCACGACGTCCTCGTGC 941103 29 100.0 32 ............................. CGTTACTCCAGACAATAGAGCGCCTCACCACT 941164 29 100.0 32 ............................. CATAGGGGCCGCAGAAGTTGCCACAACCACAA 941225 29 100.0 32 ............................. GGGTCAATGTTGATGCCGGGGTGTGTTGTTAC 941286 29 100.0 32 ............................. GGAACTCATGCTTTTACCTGATGCGGCGGCAC 941347 29 96.6 32 ..........T.................. CGAGGCGGCATCAAAGACGACGAAACACCATG 941408 29 100.0 32 ............................. GATTTTCCCGCGTTGGTTGTATGCCGTGCGTG 941469 29 100.0 32 ............................. CGCGTATTAAACGGGCAGATCGAGGAAACAAC 941530 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 941591 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGTGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 951026-952276 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051313.1 Salmonella enterica subsp. enterica serovar London strain CVM 35153 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 951026 29 96.6 32 ...........................T. CCAGCGGAGAGCGAGCTATACCAGGCTCAATC 951087 29 96.6 32 ...........................T. TCCGGAAAATCTACCGTTCCAGGGCGGGGCCG 951148 29 96.6 32 ...........................T. GGAACCAAGTATACGCGTAGACAGCGTCAACG 951209 29 100.0 32 ............................. GAATTGGCGTATCTGTGTCTTGCCAGACAGGG 951270 29 100.0 32 ............................. CGTAGACCACCTCTTTCGATATGTGAGTGAAG 951331 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 951392 29 100.0 32 ............................. ACATAATCCCCATGTACATAATTTATGCTCCG 951453 29 100.0 32 ............................. ATCCAGCAGAGCTACAGGAACGCCGCAAGGCC 951514 29 100.0 32 ............................. TTGATCCGGGCATTTGAATATTGGGCTAAAGA 951575 29 100.0 32 ............................. TTAAATGCATCGCGATCCCTTGCAATTATAAC 951636 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 951697 29 100.0 33 ............................. GGCACGTTTACCGTTCCGGCTGGGGTTTATCGT 951759 29 100.0 32 ............................. GGCGGATCCACGATAATTTTGTCGTTATGTAT 951820 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 951881 29 100.0 32 ............................. GCGCTATTGTATATCGACCATAAACATCGGCT 951942 29 100.0 32 ............................. TCCCTGCTGGCCGTTCTGGAATTGCGTAGCGC 952003 29 100.0 32 ............................. CCGGAGCCTGACCAGGATTTTTCCGCCGTGTA 952064 29 100.0 32 ............................. GAATTGCAGGAGTGGTTTATCGAGTGTTTACA 952125 29 100.0 32 ............................. AATCAACGGATCTTGCTAATGTAGTTTCTGCA 952186 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 952247 29 93.1 0 A...........T................ | A [952273] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCTGGTTTGCCGACAGCAATAAAAAAGCGTTGTTGGCGGAGGTTGGTGTAGGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTGCGGTTACTGGGTCTTAGCAACAAGATTTTACTGGCGGATGAGATCCATGCCTGTGATGCATGGATGTCCCGAATACTTGAAGGTTTGATCGAACGGCAGGCCAGTAATGGCAACGCCACTATTCTGTTATCTGCGACGCTATCGCAGCAGCAGCGAGATAAGCTGGTGGCGGCATTTTCCCGTGGGGTGAGGCGTAGTGTGCAGGCGCCGTTGCTAGGCCATGACGATTATCCCTGGCTGACTCAGGTCACACAAACAGAGCTGATTTCTCAGCGGGTTGATACACGCAAAGAGGTTGAGCGTAGCGTAGATATTGGCTGGCTACATAGTGAAGAGTCGTGTCTTGAACGTATAGGTGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATAC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //