Array 1 26-856 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFHO01000035.1 Mycoplasma ovipneumoniae SC01 contig42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 26 36 100.0 30 .................................... GCAAAAAAGGGTATATTAGAGCAAAGGCAA 92 36 100.0 31 .................................... AATATACATAAATAAAGACGTCGGAGTACTA 159 36 100.0 30 .................................... TTAATTGTTGGGAAATCAAACTTAGGTTCA 225 36 100.0 30 .................................... TGCCACCTTTTTTTGTAAAATAAATATACC 291 36 100.0 30 .................................... GGTTTTTCTTAAAAAAATGCTCAATTACAT 357 36 100.0 30 .................................... AAGTGGGTAGTGTCCTACCCACGAACCCGC 423 36 100.0 30 .................................... CCTCTGTCTCCTTTTTCGCCTTTAAGTTGT 489 36 100.0 31 .................................... TAGAAAATTAATTTTAGACCAAAATAAAGTA 556 36 100.0 30 .................................... AAGGGTATATAAAAAAGGGGGAGCGGTAGT 622 36 100.0 30 .................................... TGCTTTTTTTGACTCACACTATTATCAAAC 688 36 100.0 30 .................................... ATTATCTAGAAAGCAAAAGAACAGGCAAGG 754 36 100.0 31 .................................... GTATTATTACTAAAACCGAATATGCAGCCTT 821 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 13 36 100.0 30 GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Left flank : AAGAAGCAAAGGGCAAGTAAAGGCGG # Right flank : TTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [21.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1-1424 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFHO01000034.1 Mycoplasma ovipneumoniae SC01 contig41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1 36 100.0 31 .................................... TTTAAAAATTTTGCTTCCATGTTTTGTTTTA 68 36 100.0 30 .................................... AAAAATTGTGGAAATTAAATTGGTTTGCTC 134 36 100.0 30 .................................... AAACCTCTCATTATACTTTTTACTTCTAAT 200 36 100.0 30 .................................... TATTAGGGTATAAAATTGAATACGGAGTCT 266 36 100.0 30 .................................... AGCAGAAGTTGAAATTAAGAGTCAAAGTCA 332 36 100.0 30 .................................... TATAAAAGACCAACAATTAGAAAAAAGAGT 398 36 100.0 30 .................................... CTAGATGTAATAACATAGCACCACCTCCTA 464 36 100.0 30 .................................... AAAATTCATTAAATAAATTTTGGAGATCTA 530 36 100.0 30 .................................... TCAATGTTCAATTTTCTAATTAAATTGAGT 596 36 100.0 30 .................................... AGTTCAACGATTTTTGTAAAGCGGGCAATT 662 36 100.0 30 .................................... ACTAAAAAACCGCGTGGCAAATCAACTACA 728 36 100.0 30 .................................... TATCTTCAATATTAAAAATTAGACCGCCTA 794 36 100.0 31 .................................... TAATTATTTGCCCTAATTGTGCCAAACTTGT 861 36 100.0 30 .................................... ACCTTATATTTTTAATAATCAGTATTATAT 927 36 100.0 30 .................................... GCGGACTTCCACCTTTTTTAAACGTGTGCA 993 36 100.0 30 .................................... TTGTAAAAAATAAAAATATGGTATAATATA 1059 36 100.0 30 .................................... AAGTAATTTTTGTTTGTCCATATTTTTCCT 1125 36 100.0 30 .................................... TAAAAGGTCTAAATTCCAGTCCAACAGTTC 1191 36 100.0 30 .................................... CTCTCCTTTGTTTTGTCCCATATTTTGCCT 1257 36 100.0 30 .................................... TATTTTTTCGAGCAAAAAACTTTGAGATAT 1323 36 100.0 30 .................................... GATAAATCACGTAGGGTAAAAACGTCACGG 1389 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 100.0 30 GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Left flank : | # Right flank : AGAATAAGAAGCAAAGGGCAAGTAAAGGCGGTTTTTGTGCTGTACAATTTCTTACTAGAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 4807-554 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFHO01000018.1 Mycoplasma ovipneumoniae SC01 contig24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================================================================================================================== ================== 4806 36 100.0 29 .................................... TTTATCTTGGTATAATAAACAAAATAGTC 4741 36 100.0 31 .................................... TCAATTAGTGATTCTGCTAATTTCATTTCTC 4674 36 100.0 30 .................................... ACCGAAGGTGAAGCAAAAACATTATCTAAG 4608 36 100.0 30 .................................... TAAAAAAGAAGCAAAGGGCAAGTAAAGGCG 4542 36 100.0 30 .................................... ATACATTTGAAAAAGGAACAAAATTATGCT 4476 36 100.0 30 .................................... GATAAACGCTTATAAGTATATTAAAGAAGA 4410 36 100.0 30 .................................... TTGAATTGTAGCAATGTAGTCTTTTCAGTT 4344 36 100.0 30 .................................... CTAACCTTTGTTTTGCCCCATATTTTGCCT 4278 36 100.0 30 .................................... AATATACAAAATAGCAGGCGGCACAGCACC 4212 36 100.0 30 .................................... ACGCGAGCGAATGGTAAGGCGGCAGACCAC 4146 36 100.0 31 .................................... ATTTGCTGAACTCTTAGTTTTTTTAAATCCA 4079 36 100.0 30 .................................... TCCTGAGTCAAAAAAACCAAAAAATAATTA 4013 36 100.0 30 .................................... TTTTTGATTTTTAAATAATTGTAAGTCCCC 3947 36 100.0 30 .................................... TATATCAGATTTTTATTTATCTGAGACTCA 3881 36 100.0 30 .................................... AGCAAAAAGAATTTACTATGAAAACCGCGA 3815 36 100.0 30 .................................... GCAAATCTAACAAAATTACGTGCCAAGAGT 3749 36 100.0 30 .................................... ACTATTTGAATCTGGAATATTTAACTCAAT 3683 36 100.0 30 .................................... ATAATTATAGAAGACGACTCTCAATTTTCT 3617 36 100.0 30 .................................... TTGAGAATTAAAAAAATTATTTGCCCAATA 3551 36 100.0 30 .................................... TTCATAGTAAATTCTTTTTGCTTTAATTTT 3485 36 100.0 30 .................................... ATAAAAATTTTATTTTTATGGTATAATTAT 3419 36 100.0 30 .................................... GTACTTTTCCAAAATTATACTAAACAGCCT 3353 36 100.0 30 .................................... ATAATTTTTTCGAGTTTGTTTTCCTTAACT 3287 36 100.0 30 .................................... TCTAAGACTTCCAAATCGGCGCCGACAAGT 3221 36 100.0 31 .................................... CCCCACAAGAGAGGCATTTGCTCAAAGACTA 3154 36 100.0 30 .................................... TTCATTGTAGTCAAACTTGATGATCTTCAA 3088 36 100.0 30 .................................... ATTGAATAGACTCTTGTTGTTTTTGGAAAT 3022 36 100.0 30 .................................... AAACACGAGAGTGATATAAAAAATAATATA 2956 36 100.0 30 .................................... TAAAAATAACAAAAAATAATGTCTCTCGAG 2890 36 100.0 30 .................................... TGTATTTTCGTCGTACCAATCGCGAGTTTC 2824 36 100.0 30 .................................... TATTTACAAAATAAAGTTGACCAAAACATA 2758 36 100.0 31 .................................... GTCAAAAAAAACAACCTCATAGTCATTAAAT 2691 36 100.0 30 .................................... ACTCGCTCAAAAAAATAATTACAAAATAGA 2625 36 100.0 30 .................................... AACTTTGTATACAAAGTCGATATCGCACTT 2559 36 100.0 30 .................................... TTGATAATTCGGTTAGTATATTAGCAGCGT 2493 36 100.0 30 .................................... TTAGAAAATACCCGAGACATAGGTCTGAAT 2427 36 100.0 31 .................................... TGAACATATAGTCAATTTTTGTTAAGGCTAT 2360 36 100.0 30 .................................... AAGCACAAGATGTTTTTTATAAGGAAATTA 2294 36 100.0 30 .................................... GAGGTGATTGAAAATTATTGTCAAAAACAC 2228 36 100.0 30 .................................... CAAATTGAAACGAAGACTACAAAAATAAAG 2162 36 100.0 30 .................................... TATTAGGAAATTTTAAACAAGTTACTTTAG 2096 36 100.0 30 .................................... TAGTGTAGTTCATTTTCGGGCATACACAAA 2030 36 100.0 30 .................................... GATAATGCTTTAAATAATTCTAATAAATGT 1964 36 100.0 30 .................................... TTAATTGTTGGAAAATCAAACTTAGGGTCA 1898 36 100.0 30 .................................... GTTTGAAGTTACGATAAATTACTTAATCAT 1832 36 100.0 30 .................................... CGTCGCTTAAAAGATGTTGAAATCCCGCTG 1766 36 100.0 30 .................................... TAAAAGGGCAAAAACTAGGTAATTAGGGTA 1700 36 100.0 30 .................................... AGTTATGATATTTTTTAGTCAAATTGTCAA 1634 36 100.0 31 .................................... TTTATAATCCAAAGTTTTTTGATCTGCCGAA 1567 36 100.0 30 .................................... AAAAGCTTGATAATTTAAAAATTGACCATA 1501 36 100.0 30 .................................... TATTGTCTAAGTAAACTGCCGTTTTTCATG 1435 36 100.0 30 .................................... TATCAGTAATACTAATACCATATTTGATTA 1369 36 100.0 30 .................................... GAATTAGAACAGGTTACAAAACAGATTTTC 1303 36 100.0 30 .................................... AATTGAACTTATTAACCAAATTAGTGATAA 1237 36 100.0 28 .................................... AATTTTGAATGAAAAAGATTTAGATGCA 1173 36 97.2 30 ................G................... AAAGCAATAAAGTTTTCAAACTCACGCTTT 1107 36 97.2 33 ................G................... TTAAGACATCGAGGAGGCCTATGAAAAAAGCAT 1038 36 75.0 36 ....G....AAT..A....G...TT..........G ATGAATACTACAAGGCAAGACGCAAGAACAAGTATA 966 36 69.4 33 ...A....ATG.C.G...A.T...T....A....G. AACATTTAGACAAGGGGGCCTTAAAATGCCGCT 897 36 75.0 34 ...C...C...A..G.....A...A.C..A.....T GGCTCTACCAACATGTTACCACTTATGGCATATT 827 36 83.3 202 A...CA......CGA..................... AATATTATATCTAATACCATATAAACAAACACGAACAGGCACTAAATTAAACAAAGCAAACCCTTTTTCAATAAATGAGGATGACGCGCAAATGAATAGATCACTAGCACAAGTTTTGATAATGATAACCTTATGATTAATACTAATTGGAATTATAATTGCATCGGTTTAGAAGATATGACTTTATACCCCAATTAACCAA 589 36 86.1 0 .......CA...........T...T.........T. | ========== ====== ====== ====== ==================================== ========================================================================================================================================================================================================== ================== 62 36 98.1 33 GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Left flank : TAAAACCGAATATGCAGCCT # Right flank : CTAATCACAAATTTTAATAACTTTGACTATATTTATCTAATGGATTTGATAGTTAATAATTTAGAAAATTAAAAATTTAATTTGAATTTAAAAATTCTTTTATATTGCTTGAAGGCACAAAAAAAGAAATACCTTCAACTGGTTTTTCATTTATAAGGCGAAAAGTCATTATCCCAATTACTTTGCTTTTAGTATTTAAAACAGGGTCGCCAAGTAATATTAAATATTTTGTGTTTTTAAAGTAAATCTATTTTGATAAAATTTATCATAAAGGACCAAAATATGAAAAACAGCAAAAAACATTATCACCATTTGAGTTAGAAGCTAAGAAAATTGTTGACAAATACGCTGATTATAAAAAATTAAAAAAAGAAGATTTTCACAACGAAATTTCGCATATTTATAAAATTTTGTTGAGAGACACTCTTAAATGCAGAATGAACCAACATTTAGGCTATGAAACACGCAACCGAAACAAAAAAGGCGTGCATAGACCGAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [35-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 70118-71011 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFHO01000003.1 Mycoplasma ovipneumoniae SC01 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 70118 36 100.0 30 .................................... ATTTTGAGATTGAAGACCTCCTTTCTACTT 70184 36 100.0 30 .................................... TGCAGAACCCTGGCAAAGGCGGCAGACAGT 70250 36 100.0 30 .................................... AATTCTTTTTTATTAAATGTTCGAGTTAAA 70316 36 100.0 30 .................................... AAAATACTAAATTGTCTTACACTGATATTG 70382 36 100.0 30 .................................... CTCTTTTATATATTTATAAGCATTTATTAA 70448 36 100.0 30 .................................... GAGTTGGTGTTTGCCTCCTACCCATTGTAC 70514 36 100.0 30 .................................... CTAGTTTTGAGATATCTTCAAAACTCCGAT 70580 36 100.0 30 .................................... AATTTATTTAATTCTGTTGGCGAACTGTTG 70646 36 100.0 30 .................................... TAAAAAGCGAACATCTTGCACCTGAATATT 70712 36 100.0 30 .................................... CTCTTTAAATTTTAAATAACGCTCGCTATT 70778 36 100.0 30 .................................... CTCAACTTCTTTCTTGTTTATAGACTTCTT 70844 36 100.0 30 .................................... TAAAAAATAAAGGGACTTTGTCCCTATTTT 70910 36 100.0 30 .................................... TTTTACAATCTCAACGTCTCAAAATGCTGA 70976 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Left flank : TTTAAATTATGAAATTGATAATGTAAAACTAATTAAAGCAATTTTTAACATCGAAAATGATATATTAATAAATGAAGAAAACTTTGAGAATCTAGCCGAAATTATTTTTAGTACAATGAAACAGACAATTGTAATTCTGAAAGATCTTGATTATATAAAATTTGAAAAACTGTTTAAATATAATAATGTAACTTTCCTAATTTTGACAAATGATTTTACAAAATATATTTCCAAATTTAGTGAACTTGAATTAGTTGCTTTTTATTCACAGAAAACTGTAATTGATGTAATTGATAATTTGCCGATTATACGTTATTTTGAAAATCTCAAAAATCGTCCTGTTAATGAAGATGAGCTAATATACACTTCTGAAGAAGAGAAAATGGCAGCAAAAATGCATTTTTACAAAATAAAAACAAGTTTTTTAAACTAAAAACCCTTTTATAATTGATTTTTTTAGTTTAAAAATTAAAAAAATACCTTTTTTTCTTGGAAATGAG # Right flank : TTTAAAAATTTTGCTTCCATGTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [85.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //