Array 1 78132-73782 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRYM01000006.1 Pseudoxanthomonas sp. SGD-5-1 6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 78131 28 100.0 32 ............................ TCCGGGGTGGTGTGGGTGGTGCTACACCACTG 78071 28 100.0 32 ............................ TTCGGCTGCAGGGCGTGGCCGAACAGCGTGTT 78011 28 100.0 32 ............................ ACCGGGCCCTGGCGGAGCAGGCCGCTCAGCGC 77951 28 100.0 32 ............................ AGAACCAGCATTACCATGCCGTCGATGATCGC 77891 28 100.0 32 ............................ ACCGGGAACCGAATCTGCGTCCAATCCTCTTC 77831 28 100.0 32 ............................ TGGGCCACTGCCACAGACATCTGCGCTCGCCC 77771 28 100.0 32 ............................ TCAAATGGCGTCGGACGGTTACTACCTGCAAC 77711 28 100.0 32 ............................ GTTGCAGATGCCGGCGATGGTCGAGTACGGAA 77651 28 100.0 32 ............................ TACGGCGACAACCCGCGCTCGGTCGCCGGTGC 77591 28 100.0 32 ............................ AGATCCGCTCAGTTTCGGCGCAGGGGAGGACC 77531 28 100.0 33 ............................ TACACCGAGTACCAAGCGTGCAGGCTGGTTCAA 77470 28 100.0 32 ............................ TCGCCCAGCAGCTTGCAGCCGTGGGCGTGACC 77410 28 100.0 32 ............................ GGTAGTAAACGGGGTATGCGTCCTGCCGCAAT 77350 28 100.0 32 ............................ ATGGATAGTGCTGCGGTCGATCAAGCGCGGCA 77290 28 100.0 32 ............................ GTGCTCGGCAGCCTGCCGCCGCCACTTCGCGA 77230 28 100.0 32 ............................ GAGGACTACACTGTCGCCGCTGGCAGTTCAGG 77170 28 100.0 32 ............................ TTACTTCGGACGGCAGCGGCAGCAGTTCAACG 77110 28 100.0 32 ............................ ACCCGCAAGAAACCGTTCGGCACATCCATCGG 77050 28 100.0 32 ............................ ATTCGGGCAGAGCGCGAGCGCACCATCCAGAC 76990 28 100.0 32 ............................ GGACGTGACCTCGATCTCGCTGGACCTGATCT 76930 28 100.0 32 ............................ TCACAGAGTTCGCCAATGCCGGTAACGGTGGC 76870 28 100.0 32 ............................ GGTGGTAGGCATGCTGCAGTCCCATCGCTCTG 76810 28 100.0 32 ............................ TCAAGCCGCGCCTGGGGAATGCCGGTGTACTC 76750 28 100.0 32 ............................ GTTCGTGCGCATCCCGCACGCGCTGCGGGTGC 76690 28 100.0 32 ............................ GTTCCGGCCGGCGGGCTGAGCTGGTATCCAAC 76630 28 100.0 32 ............................ AGCTTGTTGGTGCCGGTCTTGGACGGCGTGCC 76570 28 100.0 32 ............................ GCGAGGGCGCGCTGGCGCTGCCCGCGGCCACT 76510 28 100.0 32 ............................ AACACATACGTCGATACCGCAGCGTGGACCGT 76450 28 100.0 32 ............................ ATGCTCGATGGTCGCGCCAACCGACGCCTCGG 76390 28 100.0 32 ............................ ACCAACGTGGCCGCGTCGCCGGCTTGAACGCC 76330 28 100.0 32 ............................ GCCATGAGCGAAGGCATCCCGCCGATTGCGCC 76270 28 100.0 32 ............................ AGTCGGCTTCCGGGTTCACGAACTGTACCCTC 76210 28 100.0 33 ............................ CCGACCGGCTCAGCGAACACAGAATGAGGATGA 76149 28 100.0 32 ............................ AGTCGGCTTCCGGGTTCACGAACTGTACCCTC 76089 28 100.0 32 ............................ TACATCGACCAGATTGAGCGCGGTCAGGGCTT 76029 28 100.0 32 ............................ ACCGGGAGGACATTTGGCACGCTGACCCGCGC 75969 28 100.0 32 ............................ GTGTTCATGCCGCACCGCCTTCCCGGCCGAAC 75909 28 100.0 32 ............................ AGCCCGGTTCACGACGAGGTAGACGATGCCGG 75849 28 100.0 32 ............................ TGCCTGTCACAACGGGCCTTGTCGGGGCATAC 75789 28 100.0 33 ............................ CGCGCCACTTGGAGGCATCCCCGACCCCATCGA 75728 28 100.0 32 ............................ AAGTTCCGCCCGGCCACCTACAGCTGGAAGTC 75668 28 100.0 32 ............................ GCCGCCGCCAGGTCCACGCTGGTCACCGAGCC 75608 28 100.0 32 ............................ GAACTCTGGGCTGCGATGCTGGCCACCTACGG 75548 28 100.0 32 ............................ TGCGCACGGTCGCAGTGGAACTGGAGCGTGAC 75488 28 100.0 32 ............................ ACGTGCGGACGCCATCCTGTCGCCGGCAACAA 75428 28 100.0 32 ............................ TCGACGCTGGTTTCCAGCGCCGCCGCGCGCTC 75368 28 96.4 32 ........G................... GGGATAGCGGTCTGCCCAAAGCGGGGCGTTGA 75308 28 100.0 32 ............................ TACCAGCGCGCGCAGGAAACCGCGGCGCCGGC 75248 28 100.0 32 ............................ GAGCATCGCCAAGCGCCGGGCGTGCGGCTTGT 75188 28 100.0 32 ............................ TACGACACCCGTTGCGCCTACCTCGACCTGCA 75128 28 100.0 32 ............................ TGGCGTTCTGGCTGCGCGCGAATAGCTGACGG 75068 28 100.0 32 ............................ GCACTGCGCCGGGCCTTCGCTCGCTTCTCCTG 75008 28 100.0 32 ............................ TTCTTCCAGCCACTGATTGATGCCGACCGGAT 74948 28 100.0 32 ............................ ATGTGGCGATGTACAGCAGCCGGGCCAGCGGA 74888 28 100.0 32 ............................ GGCCACAACTTCGATCATGCGTGTCCCGTGCT 74828 28 100.0 32 ............................ ACCAGGCGGGCCGCCAATTCATGCACTCCGCA 74768 28 100.0 32 ............................ AGCCAGCCGATGCCGACCTTCACCGTGTCCTC 74708 28 100.0 32 ............................ CGTATGAGCTACACAAAACGCCCCGACCTGAC 74648 28 100.0 32 ............................ GGATGCCCCGGTCACCGTGCCGGCCACAAACC 74588 28 100.0 32 ............................ AGGATCGTCTCGACCGCCTCGCGCTCCTCGCG 74528 28 100.0 32 ............................ TCGACCGCCGTCAGGTGCGCGGTCGCCTTCTC 74468 28 100.0 32 ............................ TGTCCCTGCCGGAGATCCCGGCCGAGACTACG 74408 28 100.0 32 ............................ AAGATGCCGCCAGGCCACAGGCTGCTTCAGCT 74348 28 100.0 32 ............................ CAGTTGACCGAGATGTCGACGTCCCAGATGCC 74288 28 100.0 32 ............................ ATTTCCGGAATAGTAGCCAAGGCCCGCTCCGG 74228 28 100.0 32 ............................ AGTGCGAGGCGAATATCCACTGATCCTTCGGC 74168 28 100.0 32 ............................ ACCGGAGCGAGTGCATGCGATCCGACACCACC 74108 28 100.0 32 ............................ AACACGAGGATGACCGCGCCGATGCGGAAACC 74048 28 100.0 32 ............................ ACGACACCGAGCAGCCGCTGCCGGCCGACCTC 73988 28 100.0 32 ............................ AACCGTCGCCGTCCTGCTGGAAGAACTCCTCC 73928 28 100.0 32 ............................ GGCGTGGAGAGGCGTTCGCTGCACGCTTGAAA 73868 28 100.0 32 ............................ AACACCACAGACCCGGTGCGTGCACTTGTTGA 73808 27 75.0 0 ...........A..-.......A.TGCG | ========== ====== ====== ====== ============================ ================================= ================== 73 28 99.6 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : GCGGGACTTGCTGTCTTCCGACTGGCTACGTGGCCTGCGTGACCATGTCCGCATGGGCAACGTCTTACCCGTGCCTGCGGATGCGATGCATCGCAATGTCCGACGTCGGCAGTTCAAGACCAGCGTTGAACGCCTACGGCGGCGACGCATGCGACGGAAGGGCGAAACAGCGGAGGAGGCCGCGCGCGCCATCCCTGACTCCGCGGCCGAAAACCCGAACTTGCCCTACCTGCATCTACGTAGCCTCAGCAGCGGGCAGGCCTTCTGCCTGTTCATCGCCATGGGGACGTTGCAACCGGCTCCGGTTCCAGGCCGTTTCAACAGCTACGGTCTTGGTGAAGCCGGCGCCACCATCCCATGGTTCTGACCCCCTTTTTTTGGGGCGAATTCAGGCTCTTTGAAAAATCAACAAGTTGCGAACCCCCTGAAGAAAAGGGGTTGAGCTCCGGAATGTGGCCTTGGCGCCCGCCACGCAAGGGCCACACCCGGAGCTGCGTCTA # Right flank : GTGTTCGAAGGAGATCATCGGCTGCGGACTCGCTGGCAAGCAATGCCGTGCCAGCCGGAGGCGAGTCGCCAGCAGGGAGGCCCAGGTCTTCTGTCGGGGCAAATTGACGCGCCGATCCTCCATTCCTATCCGTATGGTGCATGGGCACAACTCCCAGGCAGGTCCACGGCTCGCGCCCCATGCTCCCCCGCCAGCCGTCCAACGATTTGGCTGGCCGCGCTGGTGACGCCAAGGCTAGCCAGCCCGACCTCCTGGTCGAATCCGGCCTTCTTGCTGGATGGCCGGGCACTTACCCACGTGCGTGCGCATATCTGCCAGCCCAACGGCTACGATTGGGCGCTTCGACGCTGATTGGGAGTCCACATGCCCCGACTGCTCCGCCGCCTTGCCGTCCTGACCGCGCTGCTGCTGGGCAGCGGCCTTGCCGCCGCCAGCGACCACTGGGTCGAGCTGGCCGGCGAGCGCTTCCAGGTCGAGATCGCCGCCACCGAGGCCCAGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //