Array 1 99959-100719 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RJMA01000008.1 Staphylococcus epidermidis strain RIT611 8, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     99959	    36	 100.0	    30	....................................	TAAATACCTTATTAATGAGTATCACATTAT	
    100025	    36	 100.0	    30	....................................	TTAATTGCATTAATGAATGCACTTTTTGCA	
    100091	    36	 100.0	    30	....................................	CATCTTACCTTGCTATTATGACGGTAAACA	
    100157	    36	 100.0	    30	....................................	TATCTTTTATGTTGGAACCAAATTCAACTG	
    100223	    36	 100.0	    30	....................................	TTGTAAAAGCTAAAAATGAGGAAGAACTGT	
    100289	    36	 100.0	    30	....................................	GAAAAATTCATTCACTCAATGGGAAATCAA	
    100355	    36	 100.0	    30	....................................	TGTTTATTCAGTTTTGTGATTTATATAATA	
    100421	    36	 100.0	    30	....................................	GATAAGACGTTTACTCATAACAGAAACAGC	
    100487	    36	 100.0	    30	....................................	AAATCGCTCATGCGCATCACTACACAGAGG	
    100553	    36	 100.0	    30	....................................	TTATCTTCATCATTTGGACAAGCCCACATG	
    100619	    36	 100.0	    30	....................................	ATAAACCAGTCATACCTCTTGCCCAGTATA	
    100685	    35	  94.4	     0	...............-...................C	|                             	
==========	======	======	======	====================================	==============================	==================
        12	    36	  99.5	    30	GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT	                              	       

# Left flank :   ATTATCAAGCAAAAGAAAAATCATTTGTAATCTATTTATATCCAGAAGCTGGTCTTAGCATTAAAGAACAAATAAGATTTAGGAAAATACTAAATAACTTACCTGTTCCGGTCATTGTTTTAACCGAATCACCCCGTTTTTTATCTGAAAGTATTAAGGGACTAAATTATTTTATTAATAATATTCAAATGATTACAGAATCTTTTTTTGAAGATAGCTATTGGAATGCGCCAATTAATGTGGAAAAAGAACGGATTAAAGAGAGGTTTGAGTATTTATTTGTAAAATATTGTTCAGTTTTAGAAATAAAACCGATTATCTCTAACTACTTGCTTGCGGATATTATTGTTTTTAATGATATTGATCTTTATATCATTGTTTCATTTTTAAAACATTGTAATTTAGAATATCAATTAGATATCGATAAAACAAAAATTTCATTAGCGTTATCAACTTATCTATTTTCTTAATTATAATTCAAGGTTATAATTGTGCTAGAG
# Right flank :  CCCTTTCTTGAATGTCATTTCTAAGTTGTTTGCAACAGTTTATGGTTATTTAGAGAGCATAGTAATGAAAAATGGGATTTAGTACCAAAAGCAGGACGCTCACCATATGATAAATATAATGACGAGGAAACTTTTTATGCGTGGAAACGACAGGCTATGATATTTCTGAAAGAATCATACAATGATTGGGATATGTTAACGATTGCACAATATCATGGGTTAGCGACGAGGCTATTAGATTGGAGTTTCAATCCATTAGTAGCAGCTTATTTCGCTGTGAAAGACTTTGAGGATTGTGATGCTGTTATTTATGCTTATTTGAAAAAATCAGATATTAATGTCAAGGAAGTACATCCAATTGAGAGTAAGGGAATAAAGAAAGTGAAACCAAATGGACTAGCAACAAGAGTAGTAAGACAAAGTGGTATTTTCACAATTCATGAACAACCAACTGCGTCTATTGAAGATAACTTATCGAAAAAAGAAAAATTAAATAAAAT

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:75.00%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.60,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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