Array 1 2377-1176 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDAD01000051.1 Propionibacterium freudenreichii strain CIRM-BIA 514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 2376 36 100.0 36 .................................... GTGGGCGACGGGGTCGCGAAGAACCGTGGCTTCAAC 2304 36 100.0 34 .................................... CCGTGGCGGATGAGCCACAGCTGGATGGCGCGGN 2234 36 75.0 36 NNNNNNNNN........................... AGGCGGAAGCGCCACCATGCGACCCCCGTCACCCCG 2162 36 100.0 37 .................................... GGGAGGGCGAGGCTCGAAGCGATGACAGCACTCGCCT 2089 36 100.0 38 .................................... AATTCCCCGGCCACGCCGCGGATAATCCAGTCGCCGCG 2015 36 100.0 38 .................................... CCTGTTTTCGGGGCGCTTGAGGGCACGACGACTTTCGA 1941 36 100.0 37 .................................... AGGTCGCAGCTGCCGGTGATCTTGCCGAGGGTCTTGG 1868 36 100.0 36 .................................... GTGCCATGTGGACCCCTCACCCCGACAAATTTCCTC 1796 36 100.0 38 .................................... GTCGAATCAGGGAAGTAGGCGTTCGTTGCCGTTCNNNN 1722 36 83.3 37 NNNNNN.............................. GAGCGTTGCCAGGCGGTGAAGGCTTTGTTGTCGCNNN 1649 36 80.6 37 NNNNNNN............................. GCCAACCAGCCGGGATAGGCCCGAAAAACGACCCAGG 1576 36 100.0 38 .................................... CGGGCCTGCTGGGTGTCGGGGTCGGGGTCGTCCGANNN 1502 36 80.6 35 NNNNNNN............................. GACGACTCAAAACTTGCGCACCCACTGGATCACCT 1431 36 100.0 35 .................................... GTCGGAGAGGTGTCCGGTGACCAGGTGACAACCGA 1360 36 97.2 39 ...........................A........ GCTTCCGTTGGTGAACACCATTTTGGTTTGATTCCACTC 1285 36 97.2 38 ......................A............. TCGTCGTGGGCGCCGGGCACGTCCATCTATCTGGCAAA 1211 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 17 36 94.9 37 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : GCGACGCGGGGCAGCTACGGCNNNNNNNNNNCCTCCTTCTGGAGGGGCCCTTCATTGAGGCATCGTCCCCCAACTTGGAGAAAAGCGCCTGGACCGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTTGAAGGGCAGTCGGGCGTCGGATTCGAAGTCGTCGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCCAGAAGGTCGGGCTGTTCAAGGATGACGGCGGNNNNNNNNNNCTCCTTCTGGAGGGGCCCTTCATTGAGGCCGGTGAGCTCCCTGACCCGCTAGATTTCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCCTTCTGGAGGGGCCCTTCATTGAGGCGCTGATCATCCAGCTGGTCGGCGGGATTGTCGGG # Right flank : AAGATGAGCGGGCCGAGGGGTTCGACCCGGGACNNNNNNNNNNNNNNNNNNNNNCCTTCTGGAGGGGCCCTTCATTGAGGCAGGCGCCAAGGGAATGCGCTTCTACAACCGCGTCACGCTGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTGATGCCCCAGGCCGGCGCGCAACTGCTCACCGAGCTGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCGTGAGCTCGGGCTGAGCGTGAGCCAGACAGCGGCAAAGATTGCTCCTCCTTCTGGAGGGGCCCTTCATTGAGGCAACCTGTGGGGCTTCCCGGTTGTCGTCACGACCGCATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCCGCACCAAGGCCCCGGCTCGGCGAGGGACGGTTGCCGTATTGCCTNNNNNNNNNNTCCTTCTGGAGGGGCCCTTCATTGAGGCGTCATGGTGTGCGCACAGAAACCTAGAGTACGGGCGGATTG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [9-9] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 5037-2673 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDAD01000051.1 Propionibacterium freudenreichii strain CIRM-BIA 514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================================= ================== 5036 34 100.0 49 .................................. CCGACGCCGCCGCTCACCTCGCGCCATTTCGTNNNNNNNNNNNNNNNNN 4953 34 82.4 38 NNNNNN............................ GCCTCGAAAGTCGGCTGGATGAACTGCATCAAACCGAT 4881 34 100.0 41 .................................. CGGATGATTGTGGTGAGTTGGTAGGTGGCCGTGTNNNNNNN 4806 34 88.2 37 NNNN.............................. TTTGCTTCCATTCTTCTCAAGCGCCCGCCTGGCGGAT 4735 34 100.0 38 .................................. TTGAAAAATCCCAAAGATCTGCAATGCTTGTATCAAAT 4663 34 100.0 39 .................................. GTCACGGCGCTCCACGGAACCTCACAACAGCCTNNNNNN 4590 34 88.2 37 NNNN.............................. AAACCCCCGGGCGCGACCGCACTGATCCGGGCACGAT 4519 34 100.0 38 .................................. TTGAAAAATCCCAAAGATCTGCAATGCTTGTATCAAAT 4447 34 100.0 39 .................................. CGATGTCGGTGGCGTCGTTTCCGCTGCGATCACGAAAAT 4374 34 100.0 34 .................................. GCCTTGGCGAACTCGGACCCTGATTCGCGCGNNN 4306 34 79.4 38 NNNNNNN........................... AGTCGCAGCATCGGTCAGCGAAGCCCTTGCTGGGTGAT 4234 34 100.0 39 .................................. GGGGCACGTCGATCCAGGTGGACAAGCTGGGGGTCTGAT 4161 34 100.0 38 .................................. TTGTCGGCGTCGATAGCGGAAACCGACTGCACANNNNN 4089 34 85.3 37 NNNNN............................. CCGGAAACCGCCCTTTTCAGTTTGCAGGCACGCCTAT 4018 34 100.0 41 .................................. CCGAGTCGGCGCGCGCAGGCCTGCCCTACCTCTGNNNNNNN 3943 34 88.2 39 NNNN.............................. ACTTTGAACTGCCGCTTGACTGCCCATCTTGAATCCAAT 3870 34 100.0 39 .................................. GGAAAAATGCGACTCATGAGTGATGATCCCCTCGCCGAT 3797 34 100.0 37 .................................. CGCTCCAGCTTGGAGTCGTAGCCGGCGAGCGTGGAAT 3726 34 100.0 38 .................................. ATTCGCCACCCGCACCGAGGCCACCGCCTTCATCACAT 3654 34 100.0 38 .................................. AGTCGATAGGTGGATGGATAAGACTAAAGTATTATTAT 3582 34 100.0 40 .................................. GACCTTGTGCTGTCCCAGGACGATGGGACGCAAGTGGTAT 3508 34 100.0 38 .................................. TTCGCGAGTTCTGTCCAGTCGTCTTCCCACACNNNNNN 3436 34 88.2 37 NNNN.............................. CAAGGCAGTGACCGGCACAGACGGGTCGGCCANNNNN 3365 34 85.3 37 NNNNN............................. GCCGGCCACTGGGGAGGGGAAGTGAGCACCGCAGAAT 3294 34 100.0 40 .................................. ACGGATACTATTGCGCTCTACAAGGGTGGTGTTGNNNNNN 3220 34 88.2 39 NNNN.............................. TGTTATTGCTGACGATGTTAATCGTCTGATTGCTGTGAT 3147 34 100.0 44 .................................. TAACTGTTCGCGCCCTTCCCGCTCACCTGACGGANNNNNNNNNN 3069 34 85.3 38 NNNNN............................. AACGAGTGGGTCTACACGCCGACCCCCGCCGTGCCCAT 2997 34 100.0 41 .................................. GTGTTCTTTCTGTTCCTGTCCGCGTGTGCAACCTTTATTAT 2922 34 100.0 39 .................................. GGCCGTGTCGCGGCGACGCGGGGCAGCTACGGCNNNNNN 2849 34 88.2 37 NNNN.............................. ATCGTCCCCCAACTTGGAGAAAAGCGCCTGGACCGAT 2778 34 100.0 38 .................................. TTGAAGGGCAGTCGGGCGTCGGATTCGAAGTCGTCGAT 2706 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================================= ================== 33 34 95.4 39 TGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : ATAGGAATGACGGTCAGATGAGCCGACGAGATTCCCATTGCTTTCTGATCGCCTACGACGTGCCCGATGACCGTCGTCGCACCAGGTTGGCCACGGTACTGAAGGGCTACGGGGAGCGTGTGCAGTACAGCGTATTCATGGTTGATTGTCCGCCGTCACACCTGCTGGTGCTACGCCACGATCTCACCGACGCGATGGATATTGATGAGGACTCGGTGGTGATCTGCGACCTGGGCATGTCCACGTCGGCAGACGCCCAACGCATCACCTGGTTGGGCGGTCAGAGGTACCAGAGCGGCGGACGCAGCATCATCATCTGACGACCAGCGGCTCTGCGGCCCGGTTGTCACGCGGAGCCGCTCGCGTGATGTTTCCCCTTGTCACAAGCAGATTGCGCTGAAGGGGTCATCAATCCTCCACGCGCGAGCCATCCTTCTTCAGCACCGCTCGCAGGCGGCCGGTATAATGCCTAGTGGGAGCCCTGTTCCCACGCCCGCCAT # Right flank : CAGAAGGTCGGGCTGTTCAAGGATGACGGCGGNNNNNNNNNNCTCCTTCTGGAGGGGCCCTTCATTGAGGCCGGTGAGCTCCCTGACCCGCTAGATTTCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCCTTCTGGAGGGGCCCTTCATTGAGGCGCTGATCATCCAGCTGGTCGGCGGGATTGTCGGGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCGTGGGCGACGGGGTCGCGAAGAACCGTGGCTTCAACATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCCCGTGGCGGATGAGCCACAGCTGGATGGCGCGGNNNNNNNNNNCCTTCTGGAGGGGCCCTTCATTGAGGCAGGCGGAAGCGCCACCATGCGACCCC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //