Array 1 8764-9163 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOMA01000038.1 Legionella pneumophila strain NY24 contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 8764 37 100.0 36 ..................................... CTGCGGAGCTTTGCAATTGAACGTCTTGTTCAAACA 8837 37 100.0 36 ..................................... TCTGCAGCTGGTTATGCCGTAACCGCAACGACTGCT 8910 37 100.0 32 ..................................... TACAATCATTGAATGTTTGACCAGTCAAAATG 8979 37 100.0 35 ..................................... CCCAAATGGTGGTTGTATTATGTGGACGTGCCACG 9051 37 100.0 39 ..................................... TGGTTATATCCCTTAACGTAAAAACGCCTGTAAACGATG 9127 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 100.0 36 CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Left flank : TCTTTTGCATCAAAAATTAGTTTAGGTCAAAAGATGCAACTGACCGCATATGGAATGCTTTCTGAATTGATTTTTGAAAAATCATGTACCCGAGGCTATATTATTACTGGTGAAAAAGCCAAAGCCAAATTAATAAAAATTGACGAAAAATCAAAGTTCAAAGTGCTTGAAATTTATGCTAAAATAAAGAAGATTTTTGACACAGAAACATTACCATACAGCACTGCTAATGGACTTCAATGCATTCAGTGTGAGTTTCTAAATCACTGTAACGATAGATTTTAAAATCGTTATATGCTCGCTATTAATACGAGCATAGAAAAACGATTCAATCTTTAATTTTGTTGATTTCAGGGTATCGAAATTTAGATGATTTCTAATTCAAGTATTGCCTTTTTTTTCGAAAAATCAAGTCTAAATAATGCAATTTGCTATTTTTCGAAGAAAACCACTTTTAATTCCTCGTGTTTCTTTAAAATAAACAAAGAGTTAAAATTGCT # Right flank : AACAAGATCCGCAACCTCCTCTAGTCTAATTATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 841-225 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOMA01000159.1 Legionella pneumophila strain NY24 contig_159, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 840 37 100.0 39 ..................................... TGGTTATATCCCTTAACGTAAAAACGCCTGTAAACGATG 764 37 100.0 35 ..................................... AACAAGATCCGCAACCTCCTCTAGTCTAATTATAG 692 37 100.0 33 ..................................... GTATCAACAGGAGATTCACGACGAATCCGTAAA 622 37 100.0 33 ..................................... GAATATTTAATATCCAGCCGGTATAGTACAATG 552 37 100.0 37 ..................................... GTTCTTGTTTGCCATAATTTTCACTGCCCCTCCCTGA 478 37 100.0 35 ..................................... TCATTATAAGGCAATGCGTCCGTAGATATGCGATA 406 37 100.0 36 ..................................... TTTTACCTGTTTTATATACATAATCGCTTTCTACTT 333 37 100.0 35 ..................................... GTCGCATCGTTTTCATGGTCGTAGCCTGACTTCTT 261 37 81.1 0 ....A......C...........TT...T.A.....T | ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 97.9 36 CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Left flank : CCCCAAATGGTGGTTGTATTATGTGGACGTGCCAC # Right flank : TACTCCATACTTTATTCTCTGTATACTATTATAGTAAAACTCCATGGAGTTATTATTTTATATAATTAAACATGTCGTAACTCCATGAATGTGACACTTTCATGGAGTTACGACAGCTGTTATGTTTGCTTGTTTTTCATCTTATTTGCTTAATAATTAACTTGATAATTATTAAGTGCTTTTATTTTACTCTGTTGCTTTTTCTGACAATACCTGTCTTTACAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //