Array 1 66019-66186 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV809246.1 Lactobacillus sp. HMSC068F07 Scaffold730, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 66019 36 100.0 30 .................................... CAAATTGAGTGTCAACAAGTTTGAAACGAT 66085 36 100.0 30 .................................... TTAGTGGATAGTTAAGGGTTCGTTACCCTT 66151 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 97.2 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAACTCGATTTGGATAAGCTACTGCAACGTTGGATTTACAAAAAGATTGCACAAATGATTGACGATCAGCGGCTGGTTAAATTAATCGATCAATCACAACATATGGCCATGGACTTGCTGAAGGATCCCCTCTTGAATGATCTTCCTCTTACAGTTGAGCCCGGTGGGAAGCTGGAACAAATTATGAAATATTGCAATCTTCATTTTGATGAAGGGGTAACTGTAGAACCAGTTTCTAAAATTGAAGCCGCGATTCAAACCTTAACAAAGCTTGAAGAAAAGCGCCTTGTAATTTTGACTAATGTCAGTCATTATTTAGGTGCTAAGGAGTGGAAACATTTGGTAGATCAAGTTAGTGACACCACACTGGAATTGGCTCTCATTGAATTTTCAGATGTCGAGCGAAAGAACTTCTTTGAGAACTGCCAGTATGTGTACATTGACGAAGATTTTATGGATAGCCGGGAGCTGATTGATTAAGAGGCCATGTGAAAACACCG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCATTAATAGTCCAGGTGGTGATGTATTTGCTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCCAGCTGAGTGCCGGCAAGATCAGTGCTCAAGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCAAGTTGTGATTGATGTTGGTAACAGCCTGAGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCTTGGGACGGTGTTAAAGACGCTAGCTCGTGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCTCGGTTCGTTGCGATCGTCATTAAAGGCACGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCTCCGCATCAACGGCAGCGGCCAAGGAACGCGTCTCAGGT # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 66281-66646 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV809246.1 Lactobacillus sp. HMSC068F07 Scaffold730, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 66281 36 91.7 30 NNN................................. ATTAATAGTCCAGGTGGTGATGTATTTGCT 66347 36 100.0 30 .................................... CAGCTGAGTGCCGGCAAGATCAGTGCTCAA 66413 36 100.0 30 .................................... AAGTTGTGATTGATGTTGGTAACAGCCTGA 66479 36 100.0 30 .................................... TTGGGACGGTGTTAAAGACGCTAGCTCGTG 66545 36 100.0 30 .................................... TCGGTTCGTTGCGATCGTCATTAAAGGCAC 66611 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 98.6 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : TAACAAAGCTTGAAGAAAAGCGCCTTGTAATTTTGACTAATGTCAGTCATTATTTAGGTGCTAAGGAGTGGAAACATTTGGTAGATCAAGTTAGTGACACCACACTGGAATTGGCTCTCATTGAATTTTCAGATGTCGAGCGAAAGAACTTCTTTGAGAACTGCCAGTATGTGTACATTGACGAAGATTTTATGGATAGCCGGGAGCTGATTGATTAAGAGGCCATGTGAAAACACCGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCCAAATTGAGTGTCAACAAGTTTGAAACGATGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGCTTAGTGGATAGTTAAGGGTTCGTTACCCTTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TCCGCATCAACGGCAGCGGCCAAGGAACGCGTCTCAGGTAGATGTCAGATCAATCAGTTCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 34624-33794 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV809241.1 Lactobacillus sp. HMSC068F07 Scaffold665, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 34623 32 100.0 37 ................................ GCCGTTATGTTCCGGGGCTTTGAGTTAGCACTTTCCG 34554 32 100.0 36 ................................ TTCCAAGTGATCGGCAATGTACGGCGTGGCATCCTC 34486 32 100.0 33 ................................ CATTCATCTTTGAGCTGTGGCAAATACATTGGT 34421 32 100.0 34 ................................ ACGTGCTGAATCATACCAGTTTAAGGGCAGATGA 34355 32 100.0 35 ................................ CAGATGACATCAATAACAAGCTTCAGTATCTTGGG 34288 32 100.0 34 ................................ AGGCAAACAACCGCGGTTGTGGATGATTGATGTC 34222 32 100.0 34 ................................ AGAAGAAATAGAGGTGATTTGAATGACACTTATC 34156 32 100.0 36 ................................ GTACTTAGCCAGCCAAACCTCGGGATCTAACCAGGG 34088 32 100.0 33 ................................ GCCTCCATGTATTGTTTGATCTTATCGACTCGC 34023 32 96.9 34 ............A................... ATAAACTCGTCTAACCACTTCCAAACGGCTAACT 33957 32 100.0 35 ................................ CGCAACTAAAGGCACATCTGCGGATGGGCAAGGAG 33890 32 100.0 33 ................................ ACCGTGGAATTGCAGCGCTTTTATAAGCAATGG 33825 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 99.8 35 GTCGCAGTCTACGTGACTGCGTGAATTGAAAT # Left flank : TGGAGTTGAGTGCCTTCATATGTAAGTACATTGTCTTTCCAGGCTTGTTCAATATGAATAAGTGCCCATTGACGTTTGCAAAAAACGAAATGCTGAATACCGGATATTAAAAGCCAATCCTCTTCTGAATAATACAATTGAGTCACCTCCAAAGCAGCTATTAAATTCACCTATCGTCTTTGATTACCAGCATAAGAAGTCAAAAATATAGCGCTTACAAGTTTGTGGCCAAAAGCTTTTTCAAAATTTAGTTGATCATATCAGGCAGGCATTGAAGATACGTTAACGTACTATGGTATATTGTTATTGAAGAACAACATGTTTTCGACAATGAAGGTCTGAGTGCGAATGTAGGGCACACATGAAATCGCCGGTACATTCGCACTCCTGTTGTTAACTATATTTCGCAATTTGACTTGCTCTTTGCTTTTCTTGTGTTTTATAAATAGTTCCAGCCACAACATATTCGTGTTATGTGTTAGGAAACACATTATGTTGCG # Right flank : CTCTGGATACGCCGCCGCAATCACTTTGACTAGTCTCGTCGCAGTCTACGTGACTGCGTGAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCAGTCTACGTGACTGCGTGAATTGAAATACCCACTGCCTCCGGAATCACCGGCAAGTTATCTGTCGCAGTCTACGTGACTGCGCGAATTGAAATAGGATTGATTATAGCGGCAATTAAGTCGCAATCCTCATAATTACATGAGCTAAAATACGCCCTTTGAAGAAGCATATGGGGGTTAAATCATTCCAATTAAATGGGATGCGCAAAGCAAAATTATTGCTTGAAGCCTGCACTTTCTCCGCAAAAAAACCAGCATGAAACCCGACTGGAAGTCTGGCACATGCTGGCTTATTTGCTTGGAATGTCTGCTGAATTTACCTACAAATCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTCTACGTGACTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCAGTCTACGTGACTGCGTGAATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 43525-44153 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV809241.1 Lactobacillus sp. HMSC068F07 Scaffold665, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 43525 32 100.0 34 ................................ CCATCGTATCATATGACCTAGCAAAAGGTAAAGC 43591 32 100.0 35 ................................ AAAAAGCCGCGAATGGTAGTTTGCTTTCTTATCAA 43658 32 100.0 34 ................................ TAGGAGTAGCAAGGATGCTGCTGATGCAACAAAG 43724 32 100.0 35 ................................ AGCTGATTCGCAACTTTCCGACTTTTTCAGCAGCG 43791 32 100.0 34 ................................ TTTCTGTTTTGTCGAGTGGTAAGATAAAATGCCT 43857 32 100.0 34 ................................ CAGCCTTGTCTTTTAAAGTAGATCAGCATCAATG 43923 32 100.0 34 ................................ ACTGCATGACTATCGAACACAAGTGTTTGGTTGT 43989 32 100.0 34 ................................ ACGATAATTTAGACAAGATGCTGCTGGTACTTTT 44055 32 100.0 35 ................................ GAAAAGACTAGCACGGCGCTCGGTAAGGTTAATGC 44122 32 84.4 0 ....T......T..........T.T.....T. | ========== ====== ====== ====== ================================ =================================== ================== 10 32 98.4 34 GTCGCAGTCCACGTGACTGCGTGAATTGAAAT # Left flank : CCGACTATTAAAACAGGCTCAACAGTACGTCGTTCAAGTATTTGGTGATCAGCGTACTAGCGAAAACTTGGTTAAAAACGGTGTTGCACGTTTCGATGAGCATACGGGATTATGGATAGCCAGAGAAAGTCAATATGACGAAGATTTTGGATTGGATACAACGGACAAGGCCATGAACTATTTTGTATAATTAACAATCTTAAGTTGAAATTTAGATAACTTGATTTGTTGTCGAAGTTTCAAGGACAGGGTAATCTGAAGTGAGCGGTATTCAGTTGAATTGAAAACTGCTTTCTGGTGACAAGATGATTTCTAGCATCACTTTTTGTAATGCCTTCCTTTGGTGCGAATGGTAGGTAAACATATAAACCCGGGGAGATTCGCACCAGATTTATATCTGAAAGTACCGTGTTGACGTTTTATCTAGACTTTTGATGTGTATAGTTAAGCACCAGCCGCAAGATGTTGTGATCTTTAGGCTTTTTGTGCAATATCTTGCG # Right flank : TTCTTATGATCTTAAGGTTGGTGGAGCACAATTTTTAGTCCACATGGCTACATGAATTACAACTCGCGACTGTCTGAACCAAAGCAACGTTGCAGTTAGCGTTTTGATAACTACCTGCAGCGTAGTCCTCGTAATTGAGTGCCTCGAGAATAACAACAATACTCAATAACGGTGATTTTAAAAATGGCCTCTTCCAATAACAGGGAAAAGGCCATTTTATTATATTGAACATTGAATTACATATCGACCATGATTAACATCTGTAAATCAACAATCTCACAGGAAAATACGCCGTTCATTCGTGCACTTTGACAGTTTGATGATCTTGAAAATATGAGTGGGTTATCTCTCTCCAGCGTGTTTCATGAAAGACGGCTGCCTGATAAGGGTTAAGACCATATGTGCCAAGGGAGAAACCGTCGTTTGCCTCAACGACTAAAGTACGATTATCTGCTGTAACACCAATATCAATGGAACACGCGCTTGGAGCTTCTTTCCAA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTCCACGTGACTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCAGTCCACGTGACTGCGTGAATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.40,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //