Array 1 161-609 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBJY01000194.1 Pseudomonas aeruginosa strain Pae70 194, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 161 28 100.0 32 ............................ TTTTCGACCGACGCGATGGCACAAGCAAACCT 221 28 96.4 32 .............C.............. ATGTAGTTGCCCTGCATGTTGATTTGCGTGGC 281 28 100.0 32 ............................ TATGACCCGTCGTACGACTACGCCTCGAACAC 341 28 100.0 32 ............................ AATTCACCTGCTGCGGCATTCCGAGCGACAAC 401 28 100.0 33 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 462 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 522 28 100.0 32 ............................ ATAAACTTCGGTTCCGTAGAGCGCTTCTCCGG 582 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GCCGCACAGCGCGATTGGCAATCTTACCCCGGCAGAATTTGCTGCAAGTTGGCGAACTCGCCAGCAGCAGCTGAAGCAGGAAAAATTAATATCAACCCCAGGGCCTACTAACTAGGCAGCGGTACTAAAGCTGGGGGCAGGTCACAGGTCAAGGCCATGCG # Right flank : ATAGCTACGCCGAGCCAGTTGTAAGCTGACGCGTTCACTGCCGTATAGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 483-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBJY01000203.1 Pseudomonas aeruginosa strain Pae70 203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 482 28 100.0 32 ............................ GCCATAAAGGATTAGGTAGCGCCCGACATGCC 422 28 100.0 32 ............................ ATTGTGGGTCGCCAGCTGCAGACGTTCACGAC 362 28 100.0 32 ............................ AGTGGGAAGCCATGGTGGCAGAGTCTCAGAAA 302 28 100.0 32 ............................ GATCAGGCTAGCCATGACGGGCTCCATTACGC 242 28 100.0 32 ............................ ATCATGACCCAGTTCAACATCATCACCAGCGA 182 28 100.0 32 ............................ ATCAAGGGGCCGAGCGTGCCGCGCAGCCTGCT 122 28 100.0 32 ............................ AGGAGTACATGCCGAGGGCGTCTGTGACCATA 62 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCT # Right flank : ATCGGACTCAGGCGGACTTGCGCCAGGCTGACCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9650-8600 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBJY01000083.1 Pseudomonas aeruginosa strain Pae70 83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9649 28 100.0 32 ............................ TGTACAAAGGCGTTTACCGCAGAGTTGATTCC 9589 28 100.0 32 ............................ AGTTGCTGCTCGAACAGTGTGAGCCAGACGTG 9529 28 100.0 32 ............................ TGGCCCAGGTAGGTGGCCCAGTCCTGACCCTC 9469 28 100.0 32 ............................ TGGAAGTCCCGCACCGAGATCGAGGCGTTCAT 9409 28 100.0 32 ............................ GATCTGGGGCGGCATCATCACCGCAGAATCTA 9349 28 100.0 32 ............................ TAGCCAGATTGCTGTGCGGCGACGGTTCATTC 9289 28 100.0 32 ............................ TGACTCTGCACGGTGTCGCAGATTGACACCTC 9229 28 100.0 33 ............................ AGGAACACGCTCGAAGTGTCCAGCACCCTTGGC 9168 28 100.0 32 ............................ ATCAATCGCTTGATCCCGTCTCGCATGAATGT 9108 28 100.0 32 ............................ AGTGCGGTCAGACCATTCACGCCACACTTGCT 9048 28 100.0 32 ............................ ACCCTTGCGCGCAGTGCTGCGACTTCCTCCGT 8988 28 100.0 32 ............................ ATGGCGTGCAGATCGTCGAGGAACGGCTGCAT 8928 28 100.0 32 ............................ TGGGCGAGATCGGCGCGTAGCCGTAAGGCGAG 8868 28 100.0 32 ............................ TTCCCCGGCGAGATCCAGCCGCCCCAGGACGG 8808 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 8748 28 100.0 33 ............................ TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 8687 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 8627 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 43-491 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBJY01000017.1 Pseudomonas aeruginosa strain Pae70 17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43 28 96.4 32 .............C.............. TCGGACAAAGACAGCCTCCGGTCATAGGGTAG 103 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 164 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 224 28 100.0 32 ............................ AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 284 28 100.0 32 ............................ TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 344 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 404 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 464 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AGCTAAGAAATGGGCCGGCGCCTACGCGGCGCATCAGCCGGTG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCTGTGGGGAGGTTCTGGGTTTGGCATAGAGCCGAGGGCTGCCGGAAGAGAGTGGGCGACTCCGGAAGTTCCCGGATGGAAAGGGCTATAGAGAAGTCGAGGTCGGCCAGTTGTGCCAAATCAGTGCAAGACCGGAATCGACACCAGAAAGAAAAGAACCCGCGTTTTCGCGGGCTCTTTGGCATTACGTTTAATAGACCGAAACGTCAAAGGTAAGTCGCTTGCCTGTCCTATGCTCGTACCTCTCCACCGCCTTCCTATGGCTCTCAGAAGAGAAGCTGCCCTCGGCGAATTCGCATTCAACGCAAATGGTAGTAACGCGTCCATCCTTTCCTTCCGCGTTCACTTCAAAGCCCCAGTGAATGCGCCTGACGACAAAGTCCTCCATCCCCTTTTCACCATCACGAAGGATCGAAATGTAGTCACCCTTTTGCGGGAGTGCCTCCATCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 91-1319 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBJY01000156.1 Pseudomonas aeruginosa strain Pae70 156, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 91 28 100.0 32 ............................ GGCGAGCCTGGTCGTCGTGGCGGAGTGATGGT 151 28 100.0 32 ............................ TTGTTGGATGACTGCAACTTGTGACATATTCG 211 28 100.0 33 ............................ TATTACGACATCCAGTGGCGAGACATGGCCATC 272 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 332 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 392 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 452 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 512 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 572 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 632 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 692 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 752 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 812 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 872 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 932 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 992 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 1052 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 1112 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 1172 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 1232 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 1292 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTAG # Right flank : ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGCGTTCACTGCCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 91-780 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBJY01000183.1 Pseudomonas aeruginosa strain Pae70 183, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 91 28 100.0 32 ............................ AGTGAGAAGAGAACTGAAGGCATTCAGGCGAC 151 28 100.0 33 ............................ TTCTGCGCCTTCTCGCCCTCGTCCTGGATTTCC 212 28 100.0 32 ............................ AGATCAACTATCCGCGGGAGTTGGCATGACGT 272 28 100.0 32 ............................ AACCCTCGATGACGCATATCGCGAGGCGCTGG 332 28 100.0 33 ............................ AATGAGGTGCTGAGCCAGTCGTGCCCGCCCTTC 393 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 453 28 100.0 32 ............................ GCGCAGTTTCGGAGCACGAAGATCATGTAACG 513 28 100.0 32 ............................ TTCCCTAGTCAGGTGCCGCGCTCCCGGCTCGT 573 28 100.0 32 ............................ ACTCTTCGGGCGTATCGAACTCGACCCACTTC 633 28 100.0 32 ............................ TACGACCAGGCGCAACGCAAAGCGCGCGTCGT 693 28 100.0 32 ............................ AACCGCAGATGGCGCTGGACCGGGGCGTGCCG 753 28 96.4 0 ..................C......... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.7 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : AGGTTGACCAGCATGGCCGGCATCGACAGCAGTGTTCACTGCCGTACAGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //