Array 1 123218-122502 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCNK010000002.1 Escherichia coli strain PE01_627 .PE01_627.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================ ================== 123217 29 100.0 32 ............................. CCACTGGTGACCAGGTGATTTCAGTTTCGACG 123156 29 100.0 32 ............................. CGCATGGCGGACTTTCTCCCAGCGCGGGAAAT 123095 29 100.0 33 ............................. CCAATCCGCAGGGGAGTTCTGCTACACGTTCGA 123033 29 100.0 32 ............................. TTGGGTTGTGATTCAGATGGCGTAATAATACC 122972 29 100.0 32 ............................. TTAGATTTAAGGAAGAAGAAATGAACGATTTA 122911 29 100.0 32 ............................. GTCGGACTAACCATATTAGGTGTACTTATGTT 122850 29 100.0 32 ............................. TCGTGTGTCTTAACTATGAGGTTATCGAATGG 122789 29 100.0 32 ............................. CAATCCGGTAAACGTGTGCCTGGGCTCAAGCT 122728 29 100.0 48 ............................. AACCGCGATGCAGCGATGCAGCGATGCAGCGATTCACCGACCGGGCGC 122651 29 89.7 32 .......A....T......C......... TCGATCGAGGATAAACAGGCGGGGCAGGGACT 122590 29 96.6 32 ............T................ GATAAACGCGATGCGGCGCAGCAAAAAATCAA 122529 28 79.3 0 ........T...T.........-.C..TC | ========== ====== ====== ====== ============================= ================================================ ================== 12 29 97.1 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTTGAAGTGCGTGCTGGCGTTTATGTCGGTGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGA # Right flank : AGCTTCTATTTTCAAACTCATCAAGACGCCTTCGCCAGCTCTTTCACTAGCGGTAGCATTATCCGCATTACATCACGGCAGCGGCGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACATCATGCCAGCTAGTTCCCTCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCTTTATTTCCCAGATTCCAGTTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACCTCGGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCGTGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 189792-190900 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCNK010000009.1 Escherichia coli strain PE01_627 .PE01_627.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 189792 28 100.0 32 ............................ CGGACCTGAAATACCAGTGTCTTATTCTCCTG 189852 28 100.0 32 ............................ TGTAGATAAATAGCTGTTTGAAAGGCATGTTA 189912 28 100.0 32 ............................ GAAAATATTCTTGCTGATGAAGTTTCGACTGA 189972 28 100.0 32 ............................ TCGGAATCTATTGCTAATTTGTATTTTTTAGC 190032 28 100.0 32 ............................ GATTGAATATCTGCGAGATCAACGGTGGTTGC 190092 28 100.0 32 ............................ GCTCTGGCTACCGGCGGTTGCAGGTCTGGCTC 190152 28 100.0 32 ............................ GACAACGAACGCTATTTCATTGTGACTGAATA 190212 28 100.0 32 ............................ TGAGAAATATGCTCCGTCACATACCCTTCCGT 190272 28 100.0 32 ............................ AGAAATGGTGCGGCTTCACATGGGTAGCTTAT 190332 28 100.0 32 ............................ GTGTAGTAATTCGGACATTTTGAGTTATCGCC 190392 28 100.0 32 ............................ TGTTAATTTCTGGCATGAACAGCGATACATCA 190452 28 100.0 32 ............................ TCACCCTGAGAAGGATATTGCAAACGGGACAC 190512 28 100.0 32 ............................ GGAGATACCCCCTCAGCCTTTGCATCGCATTC 190572 28 100.0 32 ............................ GGGGATTCCTGGTCTTCGACGGGCAGCTCGTT 190632 28 100.0 32 ............................ GCGATGCGGTTACCCTGTCCGCGCCCACGATA 190692 28 100.0 32 ............................ TCATTAATCGCTCGCGAACGCGCGCTAATGAG 190752 28 100.0 32 ............................ GGGTCGTCGTTCCTGCTCGATGCGTTATCGAA 190812 28 100.0 32 ............................ AGACACTCTCTGGTGGAGAGAAGCGGAAGATT 190872 28 89.3 0 ....................T...C..T | C [190895] ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGTTCAGTTGGATCAAAAAGGTGTTTCTCTGGAAGTGAGTCAGGAAGCACGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGTGCACGTCCGATGGCTCGCGTCATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGACGGCGGCCAGGTCACTGTTGCACTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATGGTGTAAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTGTTTGTGAGGTGAGGGCGGTTGTAACCCTAATTTCTATGGTTGCTGTAACTTATTGATAATTAACGCTGCTGGAAGGCAAGGATAAAAAAGGGTGGCAGCAGGGAAATTGGATAGTTTTACTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGTAATGGTAGACGTTTGGTCATATCATGATGCTCTCAACGTCAAAACATTAGCCTTAGCACACAATAACAATTGTAATAATTGCGACAGAAATCAATTTCCTGCACAGAAATCAATGTTGTACTAATCCTAACGCCTTAAAACAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGACCTCAAAACTATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAATATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCTATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCGGGGGTGATGGTAGGATTTTGTGGTACGGATGGCACACCGCTTTACTCCGCCAATGAAGTAGATGTTGATGTCTCCTGGCTCAGCCCACAAAGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 200080-200706 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCNK010000009.1 Escherichia coli strain PE01_627 .PE01_627.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 200080 28 100.0 32 ............................ GCTGAGCAAAACGCATTAACACAAGACTGGTC 200140 28 100.0 32 ............................ GAACAAAATTACCGCTGGCAGCATACGAAGGT 200200 28 100.0 32 ............................ GTTCGGAGTCGGCCTGTTCTGGCTTAAACTGT 200260 28 100.0 32 ............................ AAGCATGACGGCCAAATCACTCTTTGCAGAAA 200320 28 100.0 32 ............................ CACACCAAAACTGCTAACCATAGCAGCCCATT 200380 28 100.0 32 ............................ TGGACGCTGATGACCTGAGCGATGAAGAAAAA 200440 28 100.0 32 ............................ GGCAAACCAGGATGCGTATTATGACGACGAGC 200500 28 100.0 32 ............................ CTGCTCCTCTAATTTATGCAGATATGCGTTTA 200560 28 100.0 32 ............................ CGTGCATCATGAATCATGCTGTTCAGCACGCG 200620 28 100.0 32 ............................ GCCGAAGCCCGGCGTAGCCGGTACGGATCATC 200680 27 85.7 0 .......A...C........-...T... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCTGGGAGGTATACGAAGCCATCTATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGTTGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATTTAGATTGGTTTGTTTGGTTATGCATTGTTCATGCGGTTCATCCGTCCAGGATTGTGAATGTATATGCTCTGGGCAATTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGACATTCTAATCGACCCTTTTTTCAGGGTGAGATGTAACGCATTGATTTTATTTATTACTATTTTGATGCCTCGAAAAAGGGTATGAATTGGAGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTTTGTTATTATTCCA # Right flank : AATCCATAACCCAATATTTATTTTCTTCCTTAACTCCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTGCCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGATAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //