Array 1 12285-12614 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGK010000008.1 Pectobacterium polaris strain A447-S21-J17 8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12285 28 100.0 32 ............................ CAGTACAACAGCCAGAACAACCAGCGCTCGTC 12345 28 100.0 33 ............................ ACCCGATGGTGCGTAATCGGCAAAATCTCAAAT 12406 28 100.0 33 ............................ CGGTGCGAATTGGTTTTGCCCAATCTGATCCAT 12467 28 100.0 32 ............................ TTGCGTTTAACCTGACCGACTCCTTCTATCAA 12527 28 100.0 32 ............................ GCCTTGCTGTCGCTGAACAACACCTGCCCGGT 12587 27 89.3 0 ...........C.C......-....... | C [12611] ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.2 33 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCAATATTGGCAAGCGTATGAAAACGAAGAGCTGATACTTTCCCCGATGCCCGGCGAACTGTATGTTTCCATGCTGGTAGGCGCAGGCATGACCGCCATCGGCGTTGTGAAATATCGACACGCTCGTCGCAACCCAGTCGCTCCACGCCCAACGAGTGCTAAAACGGTCGCTGCATTGCTGCTGATCGCGCTTTATCTGGCGCTTCCGCTACATCTCTACCTGCGTGAACCGCTCCCCTACTGCGCCTTTAGCCCCAGCGGTCAGCAGTTAACGGTATGTCTGGGAGACAATGACGAGCGGATTATTGTGGAGTGATGGGGATTGAATCAGATGGGGTGGAGAATAAAATCTGTAGCGAGTTTCTTCTCAACCCTTTTTTAACGGTTAGTCGTAACTTACTGATTTTTAACCACCCACAACCGAGACTATAAAAAAGGGTTTTTCTGAAAAAACAGAGTATTCTCTTTAATAATCTGATGATTAGCATAAGATTTTTACG # Right flank : AATAAAACGCGCCGAAAATCAGCAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCGCAGCTGATTCTCGGCTATCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAAGTGCGGTTGATCAACCACACCAGCGAATACGTTGAGCGCTTTCACCAGATGCTGGGGGAAGTGGACGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCTGTGGCAGATCTGCCCGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAATAAGAGCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 18765-18077 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGK010000008.1 Pectobacterium polaris strain A447-S21-J17 8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 18764 28 100.0 32 ............................ GAAATGAGCATCGACGACTACGCGGAAACCTT 18704 28 100.0 32 ............................ ACAAGGATATTGAAGACGGCCGATATGGTGAT 18644 28 100.0 32 ............................ TATAACTGGGCTGACTTTGACGCTAATCAGCG 18584 28 100.0 32 ............................ CCACCGTACCCGCATCACTCGCCCACGCTCGC 18524 28 96.4 32 ...........T................ GCCATATTCATCAGCGGGAATAACAATATGCC 18464 28 100.0 32 ............................ TTGATATTGTCGTCACTGAAATATTGCCGAGG 18404 28 100.0 32 ............................ TTGTCCCACTTAGCCCCCAGCGCTTTCGCCTC 18344 28 92.9 32 ...........C.C.............. TAACTCGGTTTGAGTTCAATATCGACCAGCCC 18284 28 100.0 32 ............................ AGTGATGCGGAAACCCGCACGACCACGATACG 18224 28 96.4 32 ...........C................ ACGAGAGCCGGTAACGTACCCGTAAAACGGGG 18164 28 96.4 32 ...........C................ TTAACGGTATTTATGCGGATCGATATAAATCT 18104 28 78.6 0 ...........T.C......T...TCT. | ========== ====== ====== ====== ============================ ================================ ================== 12 28 96.7 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTTCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGCTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACTATTTGATAAGAAAAATATAATATTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGGTGGCTGCAAAAAATATTACCCATACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACGAAAGGGCAGAAAAAAAGGGTTTTTGCGACGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCAATG # Right flank : CGGATTTAAGCGCTGTTGTCTGGCTATTATTGAGGTAGCGTTGCGCCAAGTGCTCAATGCGTTTACCCCTTAAATAACGCATATTGATGACCTTATTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGAAAAATTGTGGATTGGGTATTATTAATATTTAAAAATAATCATTTTTCCGTTAAAGTGCCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGGGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAATGCTTGTGGATGATGACTATCGGTTAGAGGAACATCTTGATTTTAAAAGGCAGCATGCAGATATTAACTATCAGAAATTACATGCTAAAATAAATGAAATAAATAATGATAATATTCATGCAATATTGACTGCGCAGGAAACAACGTATTTTTTAAAGACGTTATGCACACCAAACCCTAATGAATCCTGGAAAACAGCGATATTTGGCTGTACCGATCCTACT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 27337-27604 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGK010000008.1 Pectobacterium polaris strain A447-S21-J17 8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27337 28 100.0 32 ............................ TCGATCTGCTGTTCGTCACCCTCGGCATTAAC 27397 28 100.0 32 ............................ TGGAAGTGGAACCCGGACGACCCCGACGCAGA 27457 28 100.0 32 ............................ GCAAATCCAAAAGCAGCAGATGGATACGTGGC 27517 28 92.9 31 .......A.........T.......... ATGCCACCAGCGCATTTTTCCACCAGCAGCG 27576 28 89.3 0 ...........T.C..........C... | A [27599] ========== ====== ====== ====== ============================ ================================ ================== 5 28 96.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACGTTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAGTGTAAAGCCGTACCTGACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGCTCAAGAGCAGCGCTGAACGGTTGCGCCGACGCTCAGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGCATTCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTACAAATTAAGAGCTTGTCCAACGGCCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCCGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCGGAAGCCACCGTTCCCTGGTTCTGACCCTTTTTGGGCGACCAGCTGCAAGTTATTGATTTTTAATTGCGGTTGGTCGCTCTAATAAAAAAGGGTTTTTCGACAAAAAAGCCATATTCTCTTTAATAATCTGGTTGTTAGTGTAAAAATTTAACG # Right flank : ATATCAGTACTTGCACTTCGCCAGACATCATCCGGTCAGACTGACCGATTATTTAACCCAATCTTCCAACGTCAGCCCCTGCACTCTTTCAAACTCTCTCAGATTATTGGTAACCAATATGGCCTTAGCGCTGATGGCATGACCAGCGATGGCCGTATCATTTGGGCCAATAGGCGTGCCTGCGGCGGCTAACGCAATTTTGATTTTCGTAGTAGCGTCTACTGCTGCGCTATCCCAAGGTAACACCGCATCGAGCCGACGACAGAAAGCATCGACTAGTTGCATATGGCGTGGCGAAGCTTTTTTTCCAACCGCCCCGAAACGCATTTCAGCGTAAGTGATGGCAGAGACCACGATCCGATCACGCCGCAATGTGCACTGCTGTAGCTTGTCAATCACCGCTGTCGGGTGTTCACGCATAATGAAGGAACAGATATTGGTATCCAGCATGAACAAGCGACTCACAGTTCGAATCTCCCCTCTTCGACTATATCCTGACG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 28572-28958 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGK010000008.1 Pectobacterium polaris strain A447-S21-J17 8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 28572 28 100.0 32 ............................ AACTTGTCGAGTGCTTCAACCGCACAAGGCAC 28632 28 100.0 32 ............................ TGAACAACCATCAACTGCTGCGCCAACGGAGA 28692 28 100.0 32 ............................ GCCGCGCTGTATGCCGCCGTGGGTATGACTGT 28752 28 100.0 32 ............................ GTCATCGTTACTGTCATCGGCCGAGTAACCGC 28812 28 89.3 32 ...........TGT.............. GTTTAAGGGGCTGCGTTTTATCGCCATGAATA 28872 28 92.9 32 ...........T.T.............. CGAACAGCGGGCGCTACACGACGATGCATATT 28932 27 82.1 0 ...A.......T.........-....TG | ========== ====== ====== ====== ============================ ================================ ================== 7 28 94.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCGAATCTCCCCTCTTCGACTATATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAAAAATGAATGCCAATTGGGTTTAACCGGACGCAGCATGATGGTATCCCCCTCACGCACGATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTATTGCCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTCATATAAAATTCAGTCAGCCACTTACCATTTATCACTGCTGGCTAAAACATAAGCTAAGTATAGGTATTAATCACTCGATTGTATATTCATAGCATATGCAGATACCTAGCATAGGCCTATCGACATACGCTTATGACCTTTTTTTACGCATCACCGTAACTCATTGATTTTTAATTTCGATTGTCGACTCTGATAAAAAAGGGTTTCCCGGAAAATGTTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : GCTTATCAGAATGCGTCGCTGGCGCGACGCATTTCGGGAGCTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGATGTTCGCACAGGTAGATGCCTTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGAAGGTAGTACGGTTCATTCTCCGGTACTAAACGATTAAAGAAGCTCTCGAAATCCTGCCGCACCGTGGGATCGGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACGTGCATCAGCCCAACGTTTATCTGGCGCAGAGCGGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTGCCCACATCGCCGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATAGGT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //