Array 1 1720-105 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOUJ01000064.1 Escherichia coli strain MOD1-EC6693 MOD1-EC6693_64_length_17889_cov_40.7133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1719 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 1658 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 1597 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 1536 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1475 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 1414 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 1353 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 1292 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 1231 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 1170 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 1109 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1048 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 987 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 926 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 865 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 804 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 743 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 682 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 621 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 560 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 499 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 438 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 377 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 316 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 255 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 194 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 133 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCATGTCTCTTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 96790-96089 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOUJ01000014.1 Escherichia coli strain MOD1-EC6693 MOD1-EC6693_14_length_112119_cov_42.645, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96789 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 96728 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 96667 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 96606 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 96545 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 96484 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 96423 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 96362 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 96301 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 96239 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 96178 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 96117 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //