Array 1 318895-319901 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYJ01000003.1 Salmonella enterica subsp. enterica serovar Worthington strain BCW_2823 NODE_3_length_324133_cov_4.76752, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 318895 29 96.6 32 ............................A ATGCCGCCACTTCCATTTCGTTCAAATGCCGC 318956 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 319017 29 100.0 32 ............................. TATTTGGACAATCAGGTCGAGGTTCAGTATGA 319078 29 100.0 33 ............................. TCACAAATGCGAGGAGTCAGCCCAATGAGCAAC 319140 29 100.0 33 ............................. ACGGGACCGATATTCTGCTGCCCGGGGGCACGC 319202 29 100.0 32 ............................. GAGTTCAGTCACTTGAATGATGCGCGGGAATA 319263 29 100.0 32 ............................. GTCGTCTGGCATATGTGCGTAGCCACCTCGCA 319324 29 100.0 32 ............................. CGGATGATTCGCGCATGACTTGGGCTACTGCG 319385 29 100.0 32 ............................. GGATATCGAACTCTTACCGCCGACGATATTGC 319446 29 100.0 32 ............................. AGAGATTGATTAAATGAACAGTAACAAACTAA 319507 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 319568 29 96.6 33 ..........A.................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 319630 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 319691 29 93.1 32 .........C..T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 319752 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 319813 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 319874 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4555-6295 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYJ01000016.1 Salmonella enterica subsp. enterica serovar Worthington strain BCW_2823 NODE_16_length_114258_cov_4.68854, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4555 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 4616 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 4677 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 4738 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 4799 29 100.0 32 ............................. TACTGGATATCAACCTGCCTGAGTTAAAGACC 4860 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 4921 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 4982 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 5043 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGG 5104 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 5165 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 5227 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 5288 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT 5349 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 5411 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 5472 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 5533 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 5594 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 5655 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 5716 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 5777 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 5838 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 5899 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 5960 29 100.0 32 ............................. CAATAGGGAAAATGGCATATGAGGGCGCGCAA 6021 29 100.0 32 ............................. TAAAACGATATTCCCGGATAAAAACGGAAAGC 6082 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 6143 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 6205 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 6266 29 96.6 0 A............................ | A [6292] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //