Array 1 54539-56640 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKCF01000009.1 Deinococcus sp. S9 NODE_9_length_111497_cov_74.562216, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54539 29 100.0 32 ............................. GCCGTGTAGTTCAGCGTGCCGGGGATTAGCCC 54600 29 100.0 32 ............................. GCGGGAGTACTCGTCGCGGAGTTCCTTCGCTG 54661 29 100.0 32 ............................. CGACTGGCGCGTTGATCCACTTGGTTGATTGC 54722 29 100.0 32 ............................. AACGCGTTGGTTGAGAGTCTGCAACAGGCCCG 54783 29 100.0 32 ............................. CCCGTGCCCCGCCTGCAACACATCCTCCGGGG 54844 29 96.6 32 ............................C TGACCTCGATACGCGGCGCCCCGAGTTGGGCC 54905 29 100.0 32 ............................. GTTTTCTGGTAGTCCTCGGCGTTCAGCAGCGG 54966 29 100.0 32 ............................. TCGTTGGGGCGCTGCCCGCTACCCTGCAACCC 55027 29 100.0 32 ............................. CGGCGGCGCGTGCTGGGGGCCTGCCAATCCAC 55088 29 100.0 32 ............................. AGGATGGCGACCGAGATCGCCCCAGCAGCAGC 55149 29 100.0 32 ............................. GGGCGTATTCCCGCCAGCCCCGCTTTGAGAAC 55210 29 100.0 32 ............................. GGTAGCCGCCAGCAGGTTCAGCAGCCGATGCC 55271 29 100.0 32 ............................. CCCGGCAAGTACATCCTCGCCAGCATCCGTGG 55332 29 100.0 32 ............................. ACGCCTGGGAAGCCTGCGCTCAACTCCTGCTG 55393 29 100.0 32 ............................. GCGATGCCGAGCTGGCCGGCCATTTTCGCGGC 55454 29 100.0 32 ............................. GCGATGCCGAGCTGGCCGGCCATTTTCGCGGC 55515 29 100.0 32 ............................. GGCCGCAGTGCCCCTGCCTTGAGGCTTGGGGG 55576 29 100.0 32 ............................. TCGCGACTGGCCCAGATGAACCGGCGGCGGCG 55637 29 100.0 32 ............................. CAATCAGCGACAACCGAGCGACTGTGCGGGCT 55698 29 100.0 32 ............................. CATGGATTCCGCCCAGTACCTCGCCCTGCGCG 55759 29 100.0 32 ............................. ATGAGCTTTGAACAACTCGCGCAGTCTCTCGG 55820 29 100.0 32 ............................. CCGCGCAGGAGGTGGCGGACAAACGGTACGGC 55881 29 100.0 31 ............................. ACCTGATTAACCCCACCCCGCGCGCCCCTCC 55941 29 100.0 32 ............................. TTTGTCAGTGCGTTCAGCGTCGGGCTGAACGG 56002 29 100.0 32 ............................. CCGACCGCCCCCAGGTCTTCCTCCGCCCCTGC 56063 29 100.0 32 ............................. TTCAGATTCGCGGTCGCCACACCGCCCATCGC 56124 29 100.0 32 ............................. CCACAAGCGCCTGCCCATCGCCGCCACCACCC 56185 29 100.0 32 ............................. CCGCCCTGCGCCAGGGTCGCCATGTAGCCGGA 56246 29 100.0 32 ............................. GCCATACCTCTTGTGACGAGGCATTGACACGC 56307 29 100.0 32 ............................. GTGATTTGGCCTCCCCTGCCGTCCGGGGCCTG 56368 29 100.0 32 ............................. GTATTTTCCAGCGTGGTCACGCGATTGCGGAG 56429 29 100.0 32 ............................. GCGCTCAGCGTGGATGCCTCCGTGAACCTCTG 56490 29 100.0 32 ............................. GTCGGCAACATGGTTCAATCCAACCTCGCCCG 56551 29 100.0 32 ............................. GCGTGGGATTCTCAGGCGACGACATGCATTAC 56612 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.9 32 GTGTTCCCCACGGGCGTGGGGATGGTCCG # Left flank : ATCTCCTGCGCCTGCTGGGCGGGGACGACACCGACCCGAACTCCACCGCCCCCGGCGACCTGTGGGACCCGGAGGGCCACGCGGCGGGAGGGGTGAACCATGCTGGTCATGACTCTTGAAGCCGTGCCTGAAAGCCTGCGTGGGGAGCTTTCGCGCTGGCTGATTGAGGTGCAGCCGGGCGTGTACGTGGGCAACGCCTCGGCCCTGGTGCGCGACCTGCTGTGGGAGAAAGCCGTGAGCCACACCCGCCGTGGCCGCTGCACCCAGGTCTACCGGGCGAACAACGAACAGGGCTTTCTCATCCGCACCCACGGTGACCCCACGCGGCGGGTGGTCAGTCTCGACGGGTATCAACTCGTTGCCGTTCGCAACGCCCGCCATGCAGAATTGGCCCAGGAGTACGACCCTCCGGAGGATAATGACAAATTGTGATTTGAATCCGAGCGGGCAGAGGGGACTTCTCCGGGGGTGACGGCCAAAGAAGGCTATGTTTATGAAGT # Right flank : GGCCAGCTCGTTTCAGGGGTTACGGAAAGACCTGCTTGCCGTCTGGACTCTGACCTGGAGGAGCGAAGCGAGCACACCGGCGCGGCCTGGGGGGAATATCAACCCCCACGGCTCCTTCAGCCTGACCGGTCCTTGGCGATGTCGGTGAGATCCATCGCCCGCAGTTCTGGCGCGAGGTAGGCCGTCACACCCACCACCAGCAGGGTGACCAGCCCGCCCAGCCACACGCTGCGCGCGGTGCCCAGCCAGCTCGCGGCCAGGCCGCTCTCGAACGCGCCCAGCTCGTTGCTCGCTCCGATAAACATGCTGCTGACCGCGCTGACCCGCCCGCGCATGTGGTCGGGGGCCTTGAGCCGCAGTGTTGCCCGGCGCACCACCATGCTGATGCCGTCGAACACACCTGCTGCAACCAGCACCGCCACACTGAGGAAGAAGTTGCGTGACAGCCCGAACACCACCATACATATCCCAAAGCCCGCCACGGCAAGCAGCAGCGTGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 186718-185596 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKCF01000001.1 Deinococcus sp. S9 NODE_1_length_271294_cov_72.639530, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================== ================== 186717 33 100.0 38 ................................. AGGTTGGGTAATTCGTCCACTCAGGGATTCTCACGTTG 186646 33 100.0 39 ................................. ATCAGAGGCGAGTGCGTCCACAAAATCTTGTCGCAGTTG 186574 33 100.0 40 ................................. TGCCGGAAAACTGACCTCGATGCGCGGAATGCCGAGGTTG 186501 33 100.0 42 ................................. GCCGTGCAGCGCTTCACCTCCAGCTTGGCCCCTGTCGGGTTG 186426 33 100.0 38 ................................. CCGCCTGAAAAAACTCGACCCCAACGGGTACCGGGTTG 186355 33 100.0 39 ................................. GTAGGCCTGGCCGCTCAGCCGCTCGGCCTGGCCGCGTTG 186283 33 100.0 40 ................................. CCCATTTTCGTCTTGCCGGTGCGGCGGCCCGCGCACGTTG 186210 33 100.0 40 ................................. TCCGGGGGAGCGGGGGATACCCCCCCCGTCTTCCTCGTTG 186137 33 100.0 41 ................................. CCGCTGCAAGGACTAACTTGTGTGCTTGGGCCTCTAGGTTG 186063 33 100.0 38 ................................. GAGGGACGACGACGAGGAGCGAGCAGGAACCCACGTTG 185992 33 100.0 41 ................................. TCCATGAGCGCGCCGGTAACTTCGCGCGCAACAACGTGTTA 185918 33 100.0 42 ................................. TGGGTCGACAATCTCTCTGGGCATCGGGATAGCCCCAGGTTA 185843 33 100.0 38 ................................. TCACTCGACTCCATTACAGAGTCGAGCCACCTGAGTTA 185772 33 100.0 41 ................................. TCGAACTTCGAGTCCGGGCTTGTACCCGGACTCCCCGGTTG 185698 33 100.0 37 ................................. CGTGCGTATGGGTGGACATCCACCTGCCCGGAGGTTG 185628 33 75.8 0 ......................T.CT..TGCTT | ========== ====== ====== ====== ================================= ========================================== ================== 16 33 98.5 40 CAGCCGTCTTTCGGGGCGGCTGAGGATTGAAAC # Left flank : GAGATAGGCCGCTACCCCTGCCTCTGTCAGGTCGGCGGGCTGCGCCTCCAGCACCATATTCAGCACGCGGTACTGATGGCCGTACTCGCGGTGTTCCTCGATCAGCACTTCTGCGCTGAAGCTGTCTCCGACTTCAAGCGGCGGCATCACACCTATAACAGTGGCGTCGGGATCCTCGCCTTCAGCATTCCGCAGCCGGGCACTCATGACCGTAAAGCCGCTCTCCGCACGGAAGCGGACCTTATTCACACCTCCGGTCACGCGGAAAGGTTCGGTCGGGAGGCCAGCGCTCATGCCCGCCAGGATAGCGCCCTTTCCTGCGCGAACCTCCCGTGACGGAAAAAACCCGGGGGGTTCGCGCAAAGCAAAAATTCCCTCTGGGACGGGAAATTTGACAACCTGCTTTTTGGGCCACCGTCAAAAACTGGACAGCGCCGGGGGGGTTCGCGCAAAATGGATCCGGGGAACCGTCTAGGACACGTCCAAGCGGTGAACCGTTG # Right flank : CTTCTCGGGATGGTTTTCGCCTCGCCCACACCTGGTCACATGCTATTTTTTCCGTCATGCGCGTACTGCATACCGCCGATTTCCATGCTGGGCGGAATCTGCGAGGCTTTGACCGCACGCCAGAGATCCATGAGGCCCTGGTAGAGATCGCCGGTCTGGCTCGCAGCGAAAAAGCCGATGTGGTGTTGGTTTCTGGTGACCTCTTCGACACGGTGAATCCATCAGCGGAGGCCGAGGCCGCTGTGTTCGACTTTTTCCTGCGGCTGCGCGACGCCAGCATCCCGGCGGTGGCGATCGCCGGGAACCACGACTCGGCGGCGAGGTTACACAGCCTGGCCGGACTGCTGGGGTGGGTGGGCGTGCAACTCGTGGCGCAACCCACCGCCAATCCGCTGGAGATGCTCCGCACGGTGGAGACACGGCAGGGCGAGCGGCTGACCGTGGGGGCCCTACCCTTTCTCTCCGAGCGGCGGCTGGTGAAGGCTGCCGATCTGATGGGG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCGTCTTTCGGGGCGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 10993-10524 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKCF01000029.1 Deinococcus sp. S9 NODE_29_length_28169_cov_13.092434, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 10992 37 100.0 36 ..................................... GGCATCGGCATCGGTACGTTCGCCGCAAGGCTCTTC 10919 37 100.0 35 ..................................... AGATTCCTTTCCGACGCCAAGCGGTGGGCCTTCGC 10847 37 100.0 36 ..................................... TCGGAAGGTGGGGGCCTGGCTGGCCCCCACGCACTG 10774 37 100.0 34 ..................................... GGGGACCGTCTGGCCCACCGCCTCATACTTCCCG 10703 37 100.0 33 ..................................... ATGATGAACGTGTTGGCGCGGGCGGGGGTGCTG 10633 37 100.0 36 ..................................... AACGTGACCACCGGGGCGGGCACAAAGTCCACCGGC 10560 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 100.0 35 GTTGCAGCCGTCTTTCGGGGCGGCTGAGGATTGAAAC # Left flank : GTCCGCAAAAAAATACTGAACGCGAGGTCCTGATGAACACCCGTATTTTCGCTGTCCTGGCCCTTCAGCACGCGGTACTGATGGCCGTACTCGCGGTGTTCTTCCAGCAGCACCTCCGCGCTGAAACTGTCCCCGGCCTCAAGCGGCGGCATCACACCAATCACCGTGGCATCGGAGTCCTCGCCTTCGGCGTTTCGCAACCGAGCACTCATCACGGTAAAGCCGCTCTCCGCGCGGAACCGGACCTTGTTCACACCGCCAGTGACGCGGAAGGGTTCAGTCGGGAGACCAGCACACACGCCCGTCAGGATAGCGCTCCTCCCGCGCGAACCCCATGTGACGGAAAAACCCCGGGGGGTTCGCGCAAAGCAAAAAGTCCCTCTGGGACGCGAAATTTGACAACCTGCTTTTTGGGCCACCGTCAAAAACTGGACAGCGCCGGGGGGGTTCGCGCAAAATGGATCCGGGGAACCGTCCAGGACATGTCCAAACGGTGAACC # Right flank : CTTCGGCGAACTGCAGTAACCGCTGAACTGAGCTGGGCCGCCCGAGCACTCGGGCGGCCTTCGCCTTCCCTGTGCCTTCAAAAGGAGGGCATGTACTGTTCGATGGGAAGACCATGTGCCGCAGCTGCGTCGTTGAGGTCGGCGCTCATTGGATACCCGCCGCGTTGCCCACGCCAAACAGGATGATCAGGTCGGTGCCGGTGGCCACGTCGGCTACAACGTTGATGGTCCGATTGTCCTCAGGGAGCTGCGCCAACTTGCCCACCTCGCCGCTGAGGACCTGCACAAACGCCGGAGCCTGCCGGGTGATAGTGGTGACGGTGCCGTTGGTGGTCGTCGTGCTCGCGTTGGCGAGGTTCTGCGTGTACACGTTCAGGCTGTTCAGGCCCGCGCGGGCCAGGTCGAGCGCCAGGGTGGGCGCAATGGGGTGCACGCTCGCCGCGACGCCCTGTGACAGGTTGCCGCCCACGGCCTGATACGCGAGGGCCTGCACCGGGTAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCGTCTTTCGGGGCGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA // Array 1 28933-28463 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKCF01000011.1 Deinococcus sp. S9 NODE_11_length_95603_cov_72.057095, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 28932 38 100.0 34 ...................................... AGAATGTTGATGCGATAGGTCTTGCCCTTGCGGC 28860 38 100.0 34 ...................................... CTCGGAGCTGGGGCAACAATTCCCTACTGAAGAT 28788 38 100.0 33 ...................................... CCGTGGTCGCGTGAGCTGCCGTTGCCTCTCGAA 28717 38 100.0 34 ...................................... CTGTAGATGATGGCATTATTTACCAAACAACCCA 28645 38 97.4 35 A..................................... CCTCGATAGGGCTATTTCCATGGGACCTCCTCCCC 28572 38 100.0 34 ...................................... AGCCCGCACAAACTCCGGCACGCCTTCGCTACGG 28500 37 94.7 0 ..............................G..-.... | A [28473] ========== ====== ====== ====== ====================================== =================================== ================== 7 38 98.9 34 CGTTGCAGCCGTCTTTCGGGGCGGCTGAGGATTGAAAC # Left flank : TGAAGAGGTCGAATTCAACCTGGGCAGCGACCCCGACGTTCGGTACACGCGCACCGTCCAGATCCTGAGCACGGACCGCAACGCACAGGGCAATGTCCTGAGAACCACCTACCGGGTGACCTACACCTTCGAGAACAGCAAGGACCGCCCTGTCCGTGCTGAGGTGACCGAGCAGATCAATGGCCGCCGGATTCTGATTGATGGCGTGGCGAAGGGCCAGAATGCCGCCGCCGAGCTGCGCGTGGACGTGCCCGCCAACGGCAAGGCCACAAAGAGCCTGACGGTCATCATTGACAACAGCGAGCAGTAACGAGCAGTCCATTGCGCGAACCCCCCGTGACCATGAAAACCTGGGGGGGTTCGCGCAAAGCAAAAAGTCTCTCTGGGACGTGAAATTTGACAACCTGCTTTTTGGGCCACCGTCAAAAACTGGACAGCGCCGGGGGGGTTCGCGCAAAATGGATCCGGGGAACCGTCTAGGACACGTCCAAGCGGTGAAC # Right flank : AATTCCTTCGAGATACGCCCGCACGTCCGCCTTCACCGGCATGAAGTACATGTGCTGGCCGCGTTTGCGGGCAAAGGCGAGGGCCTGCGCTGCAAAAGTGCGGTTCCACTCGAGCGTTGGCGTGAAGTTGCGGGGAAAGACGGCGTGATTGCGAGCGCGCCAGTAGTTCAGGGTGGCGTCGCTGGTCACGGAGGTGGCGCCCCACCAAACCTCTGCGCCTTCCGGGATCAGGTCGGCGTAGGCTTCCATCAGTCGCAGATCGAAGAAAGGCTGGGTGAAAAATCCGCAAGCGCCCGCATCGAGCTTGCGCTCCAGGTAGTCGCGTTCGCGGGCAAAGCTCTGCCGGTAGGGGTCGAGGCCCGCGTAGATCCGCATGTGAGGAAGTTCGCGGCGGAAGCGCCGGATGGCCCGTACAGCGTCTACGTCATGGACTTGGGCGCTCATGTCGGCGGGTGCGTCGCCGGTGATGATCAGGACTTCGTCGATGCCGGCGGCATCCA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTGCAGCCGTCTTTCGGGGCGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 30778-32462 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKCF01000020.1 Deinococcus sp. S9 NODE_20_length_58835_cov_75.081307, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 30778 37 94.6 32 ..T................A................. GCCGGGCACGAGTTGCCACAGCAGGTAGGCCG 30847 37 94.6 33 ..T................A................. CTGGATTCCGCCGTTCGGGTGCTGCGGAAAGAA 30917 37 94.6 35 ..T................A................. AAGGCTTGGCCGTGGGGGCAAGACGGCGCACTCTC 30989 37 94.6 34 ..T................A................. TTCCGTGGGTGCTACAAGCGCGCGAGTCGAGTTT 31060 37 94.6 35 ..T................A................. GACGGAAAGCGAGAGAAGACATGAAAAACAGCAAG 31132 37 94.6 34 ..T................A................. AGCAGCTGGCGGACAGCTTCCGCAATGCTTCGGT 31203 37 94.6 33 ..T................A................. CCGTATCCACTGGGTTACGTTAACGACCCCCAG 31273 37 100.0 36 ..................................... CCCGACAGTCTCTTCGAACGCGAGACACGGGAAAAT 31346 37 100.0 35 ..................................... CCCAGCGTGAAGGCATAGGGAATGACCGCCTGATC 31418 37 100.0 41 ..................................... TGATTGCGACTCTCACGGGCACGCGTGCGGAGCACAATCAG 31496 37 100.0 33 ..................................... ACAAAGCGGCGCCGCGCGCCGATTACCCATCCC 31566 37 100.0 35 ..................................... TGGAGTCCCCGGCCTCAACTGCTGCGGGTTAGCGC 31638 37 100.0 35 ..................................... GTAATTGAAACGAATCGGACGCCGCATCCCATCAG 31710 37 100.0 37 ..................................... TAGGACGGAAAGGCGGCATTTCGGCACAGGCTCTTTC 31784 37 100.0 35 ..................................... TTCGGCGGGGACTGGTACGCGCCAGGGACGAGTCC 31856 37 100.0 34 ..................................... CCGCGCATTGCGCAAGGGCGCCCTCTCGGGGCTA 31927 37 100.0 36 ..................................... CAAGCAGTACGCGGAACAGGCCAGCTACTTCGAGCC 32000 37 100.0 36 ..................................... CGCTGAAACGGGCGATGATTACCGGGGGGAGATGGA 32073 37 100.0 33 ..................................... CAGGCGAGCCGCAGCGCGGCGAGAAGCGCCCCG 32143 37 100.0 34 ..................................... CGGGGGAAATTAGGCTTTTACCCGCACCCGGCGC 32214 37 100.0 34 ..................................... AAGCGGCAAGCCCGCCGCGCGGCCCGCCGCGCCC 32285 37 100.0 34 ..................................... AAACTGCGAACAATGGCCTGCTGGAACTGCTGGA 32356 37 100.0 33 ..................................... CGGCCAGCGCCTCAGCCGCCAGGCTCAAGCGGG 32426 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 24 37 98.4 35 GTCGCAGCCGTCTTTCGGGGCGGCTGAGGATTGAAAC # Left flank : CCGCGCACCTTGGTCGCGATGACCATCTCATCCCGGCTCCCGCGCGATTTCAGCCAACGCCCCACGATTTCCTCGGACACCCCGCCGGGATTGCCGGGCACCCAGTTGCTGTAGATGTCTGCCGTATCGATAAAGTTGCCGCCCGCCTCCCGGTAGGCGTCCATCAGCGCAAAGGACGCGCTCTCATCAGCGCTCCAGCCAAACTGCATAGAGCCGAGGCCCAGGGGGAAGAGGTGCAGGCCGCTGCAACCGAGCTTGCGGTAGGTGGTCATGGCCACAGGCTAGCGCTCCCCATCCGGACACCTCCCCTGACACCCCGTCAGCGCGAACCCCCCGTGACCATGAAAACCTGGGGGGGTTCGCGCAAAACCAAAAGTGCGTTTCCGTCGGCGTTTTTCGGAACATCCCCACCAAGAACGGGTCCAAAACTGGACAGCGCGGGGGAGGTTCGCGCAAACTGGTTCTGGGAAGCCGTCCTGGACGCGTTCAGGAGGCGACCC # Right flank : CGCGCAGGAGGACGGCTAGCCCTGTGCGAGGGCGGCGTTCAACTCATCGCGCAGCCGCCGGGCAGCTTCCCGGCTGGCCGTGACGCTCAGGCCGTCCGCGTACTGCACCGCTCGGCTCGCACTTGCCAGCGCCCCGGTACCGCCGGGGTGAAAGGCCGGGGCGAGTGCCGCAGCCGTTCCTCCCTGTGCGCCCAGGCCCGGCAACAGCAGCAGCGCCCGCGGCATCAGGGCGCGGAAGAGCGCGAGATCCTGCGGATGGGTTGCGCCCACCACTGCGCCGACGCTCGCGTATTCCCCTTCCTCCTCCGCGTCCAGCCGGGCCACCTCCACCGCCACACGCTCGCTGACACCCTGACCTTGGACATCGGCCTGATCGGGATTGCTGGTCTTGACCAGCACAAAGATGCCCCCACCGTTCGCGCGCGCTGCCTCCACGAAGGGCGTGAGGGTCTGAAAGCCCAGGAAGGGATTCACCGTCAGGGCGTCCCCCGCGTGCGCGC # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCCGTCTTTCGGGGCGGCTGAGGATTGAAAC # Alternate repeat : GTTGCAGCCGTCTTTCGGGACGGCTGAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 1 135074-136117 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKCF01000005.1 Deinococcus sp. S9 NODE_5_length_188176_cov_66.541511, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 135074 37 100.0 38 ..................................... TTCGTCAGCTCCGTGTCCATCGGCGGCGTCAGCAGGTC 135149 37 100.0 34 ..................................... TGTGTAGCTGACCTAGCCTTCTCTCCTACCTCAC 135220 37 100.0 33 ..................................... CTTCATAATCTTTACAACCTTTACCGTGTCGGG 135290 37 100.0 35 ..................................... CACGAAATCTTGTCGCACCGCCGGTCGAACCTCAA 135362 37 100.0 38 ..................................... CGCCGGAGCAAAAAAACAAACCCCGCGCTGGGCACCCG 135437 37 100.0 33 ..................................... ATCTGGAGCAAGGCGAGCGGGGACACCATCGGC 135507 37 100.0 35 ..................................... CGGTGAGGACGAGAGAGATACCACCAGCGGCCCAG 135579 37 100.0 35 ..................................... TCCATCTCCGCCTCTTTCGCACGCGATGAAGAAGA 135651 37 100.0 34 ..................................... CACGAGATAGCCGCATGTCGCGGCTAGCTCATGG 135722 37 100.0 34 ..................................... TCGCGCACCGGGGCGAACACGAATCCCCAAGAGC 135793 37 100.0 35 ..................................... CCCGATGACGCCGCCGCCGTCCGCGAACAGCTCCC 135865 37 100.0 35 ..................................... ATGCCCTCAACCTCGCGGAGGACCTCCTCATCCAC 135937 37 100.0 35 ..................................... CAGGTCGGCGCTTCCCCTGACCGCCGCCTGGAACG 136009 37 100.0 35 ..................................... CCAATAATATATTGGGCGAAGAATCCTTTCATCCC 136081 37 91.9 0 ................................C.C.T | ========== ====== ====== ====== ===================================== ====================================== ================== 15 37 99.5 35 GTTACAGCCGTCTTTCGGGGCGGCTGAGGATTGAAAC # Left flank : GCCGTCGGCGCAGCGAACGCTGGATACGCTGGACTTCAGCACCCGTAACGCCTACCTGCACCTGCTGGAGCGTCTGCGCCAGGGCCGGGACCGCGAGTGGCAACGCAGCACCGAGACGCTCTCGGGCGGCGTCCTGAAATTTCCCAAGGGCCACAGCGTTCACCGCGCCTTTTTTGTGGAACGCGAGGGCATTCTGCACGTTCTTGAACTGTGTGGTCATGACAACGAGCGGCACTATCAGGAGCTGATGCGAACCATTCGCTGGAGCCAGTACCAAAACAGCACCTTCCAGGATCTGCCCTGAAGCGTCTTTCCCGCTTCCCGCGCGAACCTCCCGTGACGGAAAAAACCCGGGGGGTTCGCGCAAAGCAAAAAGTCCCTCTGAGACGGGAAATTTGACAACCTGCTTTTTGGGCCACCGTCAAAAACTGGACAACGTCGGGGGGGTTCGCGCAAAATGGGTCCGGGGAACCGTCCAGGACGTGTCCGAACGGTGAACC # Right flank : TTTCGTGCATTCCGTGCCTGGCTGTTCCCCAGCGAGTCACGGCAAGGGCGGCTGGCAGCGGGTTTAGGCTCCAACCATGACCTCCACCGCGCCGGCCACGCCCCCAGAAACGGATCGGGCCGCCCTTCCTCCTCGCCCGCTGGCGCTCGCCCGTATGTTTATGGGCGTCGCGCTCTCGGGAATTGGCGGCGGCCTGCCTGCCCACACCCGGCGGGCACTGGTCACGCGCGGTTGGATGACAGATGAAACCTTCGCTGAGACCTTTACACTCGCGCAACTCACGCCCGGGCCAAACGCCGTCAATCTGGCGGCGATGGTTGGCGCTCGCCTTGCCGGGCCCGGAGGAGCGCTCGCCAGCGTGGGGGGGGTCTTGGCCCCGGGGCTGCTGGCCATGCTCGCCGTAAGTGTCGTCACGCTCGAACAGACGGGGGGCTTACCGCCCGCGCTGCAGAGTGCCCTGCGCGGCGCCGCCTGTGCAGCGCTGGCCGTGCTGCTTACGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGCCGTCTTTCGGGGCGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 1 59917-59310 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKCF01000007.1 Deinococcus sp. S9 NODE_7_length_139241_cov_82.291392, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 59916 37 100.0 33 ..................................... CATGCAGATCCTGAAGTGATTCGGCAACGATTT 59846 37 100.0 36 ..................................... CCGGTAAGTCCGGGCGTCTGCCTGAGCGCCCACGCG 59773 37 100.0 30 ..................................... GTAGTTGTTACACTCTCCCCCAGCCCAGGG 59706 37 100.0 35 ..................................... TCTACATCGAGGTCCACGAACATCACGTTGGAGGC 59634 37 100.0 38 ..................................... ATAATTATTGCACTCTTCCCCTAGCCAGTTCAGAGTGC 59559 37 100.0 38 ..................................... GAGGGCTACATTTTTTCGCCATCGGAAAAAATTCCTCG 59484 37 100.0 33 ..................................... TCCGGTGTCGGGCTGGCTGAACAATGCGACTCC 59414 37 100.0 31 ..................................... ATCGGTCAGCGGGCGGCCGACGAGGGCCGAG 59346 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 100.0 34 GTTGCAGCCGTCTTTCGGGGCGGCTGAGGATTGAAAC # Left flank : CATTACCCCCCCTACCTGCACCGATGATCGACCTGCTGATCTGCTACGACATCGCCACCCAGACCGAAGCAGGCCGCAAGCGCCTGCGCCGAGTCGCCAAAGTCTGCGTGGCCCACGGCCAACGGGTCCAACACAGCGTCTTCGAAGTCAGCGTCAGCGAGATTCAGCTCCTCACCCTGCGCCAGAAGCTGCTGAATATCCTCGACCCCACCGAAGACAGCATCCGCCTCTACCGCCTGCGTCAGCCGCGCGACAAGTTCGTCGAGGCTTACGGCCTCGACCACTACCGCGACCTCAGCGACCCCTTGATCCTGTAATCTCAGCGCGAACCCCCCGTGACCATGAAAACCCGGGGGGGTTCGCGCAAAGCAAAAAGTCCCTCTGGGACGTGAAATTTGACAACCTACATTTTGGGCCACCGTCAAAAACTGGACAGCGCCAAGGGGGTTCGCGCAAAATGGGTCCGGGGAACCGTCCAGGACGTGTCCGAACGGTGAACC # Right flank : CTGGTCTGGTTTGGGCCGCATCCAAAAGAGAAAAAAGGAAACCCACCCTGCTCCAGAGCAGGCCGCTCGCCAACCAAGCCCAACCTTCAGTCTTCCGCTTCGGCGCCCGGTCCCCTTCCCCTGCCACCTGCTCCGTCGGGGGCACGGGTGAGTTCGGCAGCAGGTACATTCGTCAGAATCCCCTGCTCGGTCTGCACGTCCACCGTCCCGGCGAGCGGATGGAGCTTGGTGACCTTGCCGCAGGCACCGCTGCCGGTGTGGCAGACGCGGGCGTTTTTGCGCGGCAGGTCGCGCAGCAATTCGAGATACTGGGTGTGCTCAAATTGCAGGCAGCACAGGAGGCGCCCGCATGGCCCAGAGAGCTTTTCCGGGTTGAGGGGAAGCTGCTGGTCGCGGGCCATGCGGATGCTGACGGGCGCGAACTCCTGAAGATGGCTGCTGGAGCAGTTCTCACGGCCACAGGCCCCCAAAGCGCCGATCATCTGCGCCTGCTCGCGCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCGTCTTTCGGGGCGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : NA //