Array 1 20257-23478 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCZM01000067.1 Rhodopseudomonas palustris strain 42OL contig67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 20257 32 100.0 35 ................................ GTGTTCACAAGTGCCTTGGTGCAGTGATCCCTATC 20324 32 100.0 35 ................................ AATGAAATGCTGAGGGGCGAAGCGTGAATGTGGCT 20391 32 100.0 36 ................................ TTCGTGAGCGGCTTCAGGTTGAGTTCGGCCACCATC 20459 32 100.0 34 ................................ ACCATGAACTACGAGGGGGCGACGTACTCCTCGA 20525 32 100.0 34 ................................ GTCCTCGGGGTCCACGACGGACGCTTGGCCGACG 20591 32 100.0 34 ................................ TGGCCATAGGCGACAACGGCGGCCTGCGCACCGC 20657 32 100.0 34 ................................ ATGATCGCGGCCTTGACCGCCTCAACGACACGAG 20723 32 100.0 36 ................................ TCGGTGCGCACTTTGTTGATGAAGCGCCAGTTGCTG 20791 32 100.0 35 ................................ GGCATCCAGCTCGGCAAGTTCAAGTACGTCATCAA 20858 32 100.0 35 ................................ TCCCCATCGGCCGAGACGCGGGCTGCCATCGCAGC 20925 32 100.0 34 ................................ TCTCAAGCCATCTCTTGCATGACGCCCTCTGCTT 20991 32 100.0 35 ................................ TTCGTCGGCGATCTGACCCGCGACCTCTGCCACGT 21058 32 100.0 34 ................................ CTGATCGATCAGGCGCACCCGCATCGTTCGAGCT 21124 32 100.0 34 ................................ TCGTTGGATGCCAGAGCCCGGCCCTGGCATGACG 21190 32 100.0 35 ................................ TGCTTACGCATCGCCGCCTTGGCGAGACCGAGATT 21257 32 100.0 36 ................................ CAGCTCTTTCTTGGCGTCCTTGGCCGGGCCGCCGAG 21325 32 100.0 34 ................................ ATCTCGTCGGGGTCGGCTTCCTGGAACAGGCCGC 21391 32 100.0 34 ................................ AGTCGCTGTTCGGGTGATCGCGATGGCCACGACC 21457 32 100.0 34 ................................ GCCAAGAAGGGTAGTGGCCAGACCGCCGGCGGCG 21523 32 100.0 35 ................................ GGAGACACCATCCTGTACGCTTCCCTGTCCCTCAC 21590 32 100.0 34 ................................ GTCCCTCGATCGCCGACCAGGTCGCCGCCGTCGA 21656 32 100.0 35 ................................ GCCGCCGACCATGTCGGGCAGCTCCACACGAACCA 21723 32 100.0 34 ................................ CCTGTACGAGCGGGTGATGTCGCGATGAACGCTG 21789 32 100.0 34 ................................ AGCTTGCGATATTCCAGCGCGTAGCCGAGCTGGC 21855 32 100.0 34 ................................ TGTCCCTCCGCATAGGCCACGGTGACGTCGCCGG 21921 32 100.0 35 ................................ TTGAAGCCTCGGATCGCCAGGACGTGCTGGCGGAA 21988 32 100.0 34 ................................ TTGCAGGGCTGCAGCATCTGCAGCAGGCCGGCGT 22054 32 100.0 35 ................................ CACGCTGTCCCGAAACACACCGTGGTATCGTGGTC 22121 32 100.0 34 ................................ AGGATCTTGGCCGCATCGCCGGCGTCGGCGCGGA 22187 32 100.0 34 ................................ ATCCCATCGTCGTCGTCATCATCGACGTCGCCAG 22253 32 100.0 34 ................................ CGCCCTCAGATGCAGGCGCTGCAACGTCTGCCGC 22319 32 100.0 35 ................................ TGCTAGCTTGATCGCCTCCGCCTTCGTCGCCGCTC 22386 32 100.0 35 ................................ GAGATCGGCAGCGAACGTGTCGACCCAGTCGGGCC 22453 32 100.0 35 ................................ AAGAAGGGCGCGCCAGGCTTTTCGACCCGTCAGAA 22520 32 100.0 34 ................................ GACAGCAGCGAGGCATCGATCGGCTTGCCGTCCG 22586 32 100.0 35 ................................ GGATTGACCCACGGTCGCTTCGGCATCGCGTACTT 22653 32 100.0 35 ................................ GGGCAGATGATGCCGGCGCTGGCGTGCATCAGGTT 22720 32 100.0 35 ................................ GTTCACGGCACCGCAGAACGGGCATGGAGCGTGTT 22787 32 100.0 33 ................................ GGGTCCGGATTCTCATCGTCCGTCATGGGGACG 22852 32 100.0 35 ................................ CGATCCATCATCGATCTCTGGCCCTCGCGCGCGGA 22919 32 100.0 34 ................................ GCCAACCGTCGAGATCGGATGGTCCGGGAGGGAA 22985 32 100.0 34 ................................ AGCAAGAAGGGCTGCAGCAGCAGATCGAGCCGCG 23051 32 100.0 34 ................................ GATACGATCGTGCACAGGACCGACGGGCCGCTGT 23117 32 100.0 34 ................................ ATCGGCACCACCGCCGTGACAGTCGGCGCGACGA 23183 32 100.0 33 ................................ GCGGCCCGGGAGGCCGCGGTACCGGCGGAGCAG 23248 32 100.0 34 ................................ GCGGCGGGCGTGATCGACAATGACGCGACCCTGG 23314 32 100.0 35 ................................ CTTGGCCCCCTTCTTCAGGCCGGCTTCGCGGTCGA 23381 32 100.0 34 ................................ ACCGTCAAGGTGCCGCAGCCCGGCGCGGCACCCG 23447 32 75.0 0 .....................C.CCCGCG.G. | ========== ====== ====== ====== ================================ ==================================== ================== 49 32 99.5 34 GTCGCTCCCCGCGCGGGAGCGTGGATCGAAAC # Left flank : TCGCGCGTATGATCGACAGGTGCCGCGATGCTCGTGCTCGTGACTTACGACGTTCGTACCAGTGAGCCCGGCGGTCAGGCGCGGTTGCGGCGCGTCGCCCGGGCCTGCCAGGACTATGGACAGCGTGTGCAATATTCGGTGTTCGAGATCGAAGTCGACCCGGCGCAATGGACAGCGCTGCGCGCGCGGCTCGAAAGCCTGATCGCGCCGAAGCACGACAGCCTGCGCTATTACTATCTGGGCGCCAACTGGCGCCGCCGCGTCGAGCACGTCGGCGCCAAGCCGGCGACCGATTTCGGCGAGCCGCTGATCGTCTGACAGCACGCGCGAACCACCAGCAGACGCGCCGCCCCCGCGACCTTCGCGCTGGCGCAAACCGCTGACGCACAAGTCGATTTTCGTCCCCCGTCGTGCTTTCCCCGCAATCCCTCCCCGCCTCCTCTGAGGTTCGCGCCGGCCAGCTCACTTTGCTTGCAGCGATAATCAGTTATGGTCCGGCC # Right flank : CGGCAGCAATGACACATCGACAGCTTGACAAGAGCAGCGCCCGGAGCACTACATATTGTATTCGCGGTCTCTCGAATCGTTTGATCGAGGGCTAAGAGGGAATCCGGTGCGGCGTTACCGCCTAAGCCGGAGCTGCCCCCGCAACTGTCAGCGGCGAGCCGACGTCATCAGGCCACTGGGAGCAATCCTGGGAAGGCAGACGAAGGCGACGACCCGCAAGCCAGGAGACCTGCCGCGAACAACCAAACGTCCCTGGGCGGGGTGTCCCGGTGGGTCGCTTGCTTCCGTGCGTACGGCGTTCCGTACGACTCTTGCACGCGCCTGCTGAACCCCGGCCCGCAATTCGACCCGCGGGGTGCCGATGCCTGTTTCCGACCTGACCAACCTTCCTCGAGCGATCATCAAGCGGAGCGGCGCAGAAGCGGCGTTCGACAGTGCCAAGATCCGATCCGCGATCGCGCGTGCCGGACAGGCGACGAGGGAGTTCGGCGAACTCGAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //