Array 1 2697430-2698492 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053417.1 Salmonella bongori strain 92-0238 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2697430 29 100.0 32 ............................. CAAAACTGGTTTGTTTCGCGTGTAGTCCGCCC 2697491 29 100.0 32 ............................. TCACAACATAGCCGCCTTCCGGCGCTGGTACT 2697552 29 100.0 33 ............................. TGTACGTTCTGTCGCGCACCGGAGACGGCGCGC 2697614 29 100.0 32 ............................. ATTATGGATATATTCAGCGATATACTAACGGA 2697675 29 100.0 32 ............................. TGGGTATGAATGACCACCGCCAGCGTCAACTG 2697736 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 2697797 29 100.0 32 ............................. GAATTATTCCGGCAATTGGGACACCATTATGG 2697858 29 100.0 32 ............................. TCACCTGACGCTATTAATATTGATGTCGATGG 2697919 29 100.0 32 ............................. ACGCTGGCCGAAAACGGATTTTCAATCCGCAT 2697980 29 100.0 28 ............................. CGAGGATAGTTGTACCAGGTCAGGCCAG 2698037 29 100.0 32 ............................. CTGTCAAACTGGATCCCCCTCATCATCATTGC 2698098 29 96.6 32 ....................A........ CCGGCGATGCGAAGAGCTGCCGTCACAATTCC 2698159 29 100.0 32 ............................. TGCTTCGGTGTGGGATTGTTCAACATGCGCGG 2698220 29 100.0 32 ............................. AAGAGATTAAAAATTTATGCGAAGGAGTTGGG 2698281 29 100.0 32 ............................. AATAAATGTTTCAGGCGGAAATAAAGCCGGGA 2698342 29 100.0 32 ............................. AATAAATGTTTCAGGCGGAAATAAAGCCGGGA 2698403 29 96.6 32 ............T................ ACGACGTCACTAACCGAATTTACAACCTTGGC 2698464 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGAATGAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCGCTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGAGAGTGATTGCTTTGCAGCCCATCAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGACTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATATGCTGTCCGTTCTACGGATGGCCTGTCGTCGTGTGTAATTTATCTATCATCTTGCGTTCGCTATTTCTCCAAAAAATTCGAGGAATGTATAAAGTAGCTGAATAATTTTCCATAGCGAGACATGGATCACACTATTTTGGTGAGTTTAAAGAAAAAATCGTTCACTGAATTTTTTTGTATCAAAATCAGCTGATTAGATGTTCTTTAAGAATTTAAATTTGTTGCAATTATGTTGGTAGGATGTGGCGTTGATAAAAAACACTGAATAAACAATTAGGTATATTTAGT # Right flank : GTTCCATAACCATAATCTGCGTACCAGTAATCGTTCGTACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGATAAAGGAAAGGGTGATGGCGTTAACGATTAAGGTATTGCTCGAAAATCATAAAGCCGCTGGTGTGGATAACGCTTTAAAGGCCAGGCCAGGATTAAGCTTATTAGTTCAGGATGAATCTACCTCGATATTATTCGATACCGGACCTGACGACAGTTTTATACAAAATGCGTCGACAATGAGGATCGACCTGTCTGATATATCTGCGGTGGTGCTTTCACATGGACATTATGATCACTGCGGCGGCGTACCGTGGCTTCCTGATAATAGCCGAATCATCTGTCATCCAGAAATGGCGCGTGAACGTTATGCGGCAATAACGCTTCCTGGTATGACCCGCAAAATAAAAAAATTATCGCGAGAAGGGGACTATTCACGTTACCGAATGGTGTACACGCGCGACCCCATGCCAATTAGCGACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2714373-2714830 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053417.1 Salmonella bongori strain 92-0238 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2714373 29 100.0 33 ............................. TGATCAGCACCGCAGCTGGTGAGGCTACATTGC 2714435 29 100.0 32 ............................. CAGAAAAAGACGCATTGCGCGACCAGCTTTGC 2714496 29 100.0 32 ............................. TTACCGCATTATATCCATTTAATAATAGCGTG 2714557 29 100.0 32 ............................. CTCATTATCCCCGCAATTTATTTTGATGAGAC 2714618 29 100.0 32 ............................. CAATTTTTTTGTAATTTATTCCAGCCATATTA 2714679 29 100.0 32 ............................. TACTGCTCATATGCTTCATACATACCCACTAT 2714740 29 100.0 32 ............................. CCTGTGTGCGTGCAACGGGTAACTAAGGGGAA 2714801 29 82.8 0 ............T........C.TT..T. | T [2714826] ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGAGATTGCTGCTCGTCATCCGGCGGAGCCAGACAAAGAAGTGCGATTGGCCTGTCGGGATATTTTCCGGAGTACAAAGCTAACCGGGAGGCTCATCCCGCTGATCGAGAACGTGCTGGCCGCCGGAGAAATTGAACCGCCTCAACCCGCGCCGGATATGCTGCCGCCCGCGATACCGGAGCCGGAATCTCTGGGTGACAGTGGGCATCGGGGCATAGTTAATGAGCATGATGGTGGTGGCAACTGAAAACGTACCGCCGCGTCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGCGTTTATGTTGGCGATACCTCAAAACGCATTCGGGAGATGATCTGGCAACAGATAACACAATTGGGTGGAGAGGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCTGGTTTTGAATTTCAGACCTGGGGGGAAAACCGCCGTGTTCCGGTAGAGCCAAATTTCGCCACGAGCGGGAATAGTTCTCC # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACACGATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATGCTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGCTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCAGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACGTTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGTTCTCTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //