Array 1 4052381-4050705 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXSS010000001.1 Methylomonas albis strain EbA scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4052380 28 100.0 33 ............................ TAGGTGCGTTTTTTATTTGCACCGCTTGCTTAG 4052319 28 100.0 33 ............................ TGGGACGAGGGCTTGCGGTGCTTACAGATTGGC 4052258 28 100.0 33 ............................ CCAATACGGACCCGGCTTAGTTGCAGCCACCCC 4052197 28 100.0 33 ............................ TGCTTCGGTTAAGGTGTACACCTGGCCGTTTGG 4052136 28 100.0 33 ............................ TGTTTTGCCGTTGCTTTTGGCTATCAAACGCAG 4052075 28 100.0 30 ............................ CTATGCTAACGATGCTGCTGCTGCTGGTGG 4052017 28 100.0 33 ............................ TATATCCATCTGGCAAGTAAGGCATGTGGCGTA 4051956 28 100.0 33 ............................ CCATCTTTCCACGTTCGACCAGCACGAAAACTA 4051895 28 100.0 33 ............................ CTTCAAGATGGCGAAATCGTCCTGATTGATCCG 4051834 28 100.0 33 ............................ CATAAGTCTTTCGTGAAAGCAGTTTAGCTATTC 4051773 28 100.0 33 ............................ CGACATCAACGCGGCGTTGACTGCTTCGATTGC 4051712 28 100.0 33 ............................ TATTGGGTTATTGATGGTCAACATAGACTGTTA 4051651 28 100.0 33 ............................ TACGCCAATCCCGCCTAACGCGCTGTTTTGGTA 4051590 28 100.0 34 ............................ TATCTATCGCCGGTTGTCGGCGCGTTGCAGAAGA 4051528 28 100.0 34 ............................ TGGCGTAGACAAGCCTCTGTATTACGACGGGTCA 4051466 28 100.0 33 ............................ TGGTGTCGGCTCAAGCGTTTTAAATCAGGCTGG 4051405 28 100.0 33 ............................ TAGCGTTTTCATCGATGTTTGTTCCGGGGCTTC 4051344 28 100.0 33 ............................ CGGTTTAGTCTTTCGCTTTATTGTTTCTGCTAC 4051283 28 100.0 33 ............................ TTCAACAAATCACTTTGGCTTCTATAGCGGTGT 4051222 28 100.0 33 ............................ TATCCCGGTCGGCTTCGGTGTGACATTGCACAA 4051161 28 100.0 33 ............................ TATTCGGCACAAACCTTAGCAACGCCACCAAAA 4051100 28 100.0 33 ............................ TGATCGATTGTTCCAACGCGCCGGCAATGTCGG 4051039 28 100.0 33 ............................ CACATCAATTACTTTCGGGTCGACGTATGTAGT 4050978 28 100.0 33 ............................ CTACTATGTCGGGCTAGCTGTGGAAAGCGCCCC 4050917 28 100.0 33 ............................ TTCTGTCATTTGCGCCCAGGTTTGTTCGCTAAA 4050856 28 100.0 33 ............................ CTACTACGCGCTGATTCAGGACGAGTGGAATTT 4050795 28 100.0 33 ............................ CTCCAGCGGATCTCGATAACACCGCCAAGGCAT 4050734 28 85.7 0 ........................AAAA | A,A [4050707,4050709] ========== ====== ====== ====== ============================ ================================== ================== 28 28 99.5 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : TTGTATCGATTTGGCATTCGCGCTGACTCTTGAGATGGCTGGGCGCTACAACAAGCACAAGGTGGCCGAATCGTTTCGTAAGCGGGTCATCGCAATGGATTTACTGGGGCGTATCGGCGGCGACATCGAAGAGATGTTGGGGGGCAAAAATGCTCGTCGTAATAGCTAACGATCTGCCGCCCGCGGTGCGCGGCCGAATGAAGCTATGGTTTGTAGAACCCAGGCCCAACGTGTTTGTGTCCGGCGTAAACGATGCCGTCGGTAAAGCCGTCGTGGATTACTTGTACCAGCATTGCCAGCCGGAAAGCGGACTATTGGTATTCAGGCGCATTAACGAAGCGCCGGGTTACGAAATTCGTGGCATCGGGGACCCCAAACGCGACATTGTCGAAATCTCCGGCTTGCAGTTGGTATTGGAAAAAGGTCCAACTGACAACGATGTAAAAATCTAAAACCCGAGATATAGTGGCTAAAATATGCCAACACCACGAATTGTTGGT # Right flank : TTTCGCCAGCATCTTCGGTGTCCGGATTTGGCACTGCCAGCGTCAAACTCGCCTATACAAAGCCGGAACAATTCCGAGCCTATTTTTTGTGGCTCTACGCTTGAGCTGGTTCGAGCTTTTGTGCTCAGTTTCGGAGTTGATCGTAAGAGCGTGAATAGGCTTAATTTGCCAATCAAAAACTACGGTAAAAACTACAGCGGTTTATTTTGCTCCATACTACTTTTAACAACTTTACACTCGGTCAAACTGCTGATAAGCTTTTGATTAAAGGACGTTTTAAGTAGTATGCAGTTGCATGAAAGTTGTTTGAATCGAACTTTTAATGCGATGGTCGTGCGTTCGAATCGCACACGACCCACCATGAATGACCAGATAAAACAACCAGTTAGCTTGCAAGAGCGACTGGTTTTTTTATGCCTACCGGTTTTGTGTGCGCAAAATGTGCTGAATCGGTGATTCGGTTGGCGTATTCGGCCAGATGTTCCGGCCCCAGGTGTGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4643689-4643113 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXSS010000001.1 Methylomonas albis strain EbA scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4643688 29 100.0 32 ............................. CAGATCGTTTCCGTGGCGGCGTCAATTATTCC 4643627 29 100.0 32 ............................. GCTGCCGCCGCGCCCGGCATGCTCAGTATTTT 4643566 29 100.0 32 ............................. CAAATCCTGAAGGATGCGCATAAACGTCCTTA 4643505 29 96.6 32 ............................A TGCGCCGGTAAATAGACGTTTAAACCCAAACC 4643444 28 96.6 32 .................-........... GCTTGACCGGAGTCGCTCAATCATTAAACCAA 4643384 29 100.0 32 ............................. GGTTCGATACATCTATACCGGCGCGGTTGCTG 4643323 28 96.6 32 .................-........... GGTTCGATACATCTATACCGGCGCGGTTGCTG 4643263 29 100.0 32 ............................. CATGGCGCGTCGATACGGTATGATTCAATCGG 4643202 29 100.0 32 ............................. TCACAGTCAACGCACTCAATCTGCAGCAGGGT 4643141 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : TCGTAGTTGAAAACGTGCCACCCCGGCTACGCGGACGCCTGGCGGTGTGGCTGATCGAAATCCGCGCCGGAGTCTACGTTGGCGACTTGTCGGCCAAGGTGCGGGAGATGATCTGGTCGCAAATCGAGGATGGCTTGGAAGAGGGCAACGCCGTGATAGCTTGGTCTACCAACACCGAATCCGGCTTTGATTTTATGACTTTAGGAAAGAATCGAAGGCTGCCGGTCGAGCTGGACGGCTTGAAGCTGGTGTCGTTTTTTCCGATCGAAGGCGAGGAAAGCTAGCATACCGGTTTTTCTCCCTCCCTCACTGGTCGCGTATCTAAAGCGCGGTCGTCCTGCGGAGGAGGGGGCGAGGACAAAAACAGCGCTAAATCGACTTGCAAACCGAATCTCAGGCTACGAGTTTTGCTGGCTCTTTAACAACCTGGAAAAGGCAAAAAATTCGGTAGAAATTTCGCCGGGTTGTTTTTATATGCGTAACAATGAGTTACGATTAGT # Right flank : TACCACGACTAAGAAACAACAAGTGACTGATAGACTCCAGGTGTTATCGTGCTGCACGATCCGTGCAATACGGGGTATTCTGTCGTGGCTGGCATTTCTGATCGGCTTGCCTGCGGGAAATTGCTAAAATAGCCGGCTGGCAGCAAAATTTGGGTGAACACCCGTTACCGTTTCGCTTATGCGCGCCTGGAATCGATTACGCAACAGCGTATCGATTGTTGATAACGCGTGGTCTGCGTGTAACAGTGCGTTGATCGTGTACATGCGCCTCGGGTGAGGTATTTATTCGTTGGCCCGGCTTGATTTGACCTGTTTGCCTGGGATTTGAAGAGGAATTTATATGATGGTGCAGCAAGGCTACGCCGAAGTGACCAGGGCCGATGCGCCGGAGATGATGGCATATGACGGGTGTAAATACCGAGAATTCGCTGCTGTCGACTACTATCGTCATTACGCCTGATATGAATAATATCCCACCCAAACGCGCCCTGGGCCGTGGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : GCGTTCCCCGCACCCGCGGGATGAACCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //