Array 1 967094-968515 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070858.1 Limosilactobacillus fermentum strain GR1103 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 967094 36 100.0 30 .................................... AGATAATTATGGGTTATAAAGCAACTCCTC 967160 36 100.0 30 .................................... ATCTTTACGGTTTCAGCATCACCATCTTCT 967226 36 100.0 30 .................................... AACGGACTGATGCAATGTTAGACGCCCTTT 967292 36 100.0 30 .................................... AAAATATACTCAATTTGATACCCAGGGTGT 967358 36 100.0 30 .................................... TTAATGATGCGCTGAAAGGCATTGCCAGTC 967424 36 100.0 30 .................................... ACAACTATTTCAATCTATCGAAATTATTAC 967490 36 100.0 30 .................................... GAGTAACAGTGGCTTTACGCGTGAGAGTAC 967556 36 100.0 30 .................................... ACCAGGTTTTGCGTAACTTGATTGACGCCA 967622 36 100.0 30 .................................... AAGTGGACGGTCAGCTCTACACCATCAGAG 967688 36 100.0 30 .................................... ATCGACAACGTGATTGGGGACCCAATTGTC 967754 36 100.0 30 .................................... CATTACCTTTACCTTTCTTGTTGTATACCG 967820 36 100.0 30 .................................... CCGATCGGTAGAAGTCTTTGGGAACTACGC 967886 36 100.0 30 .................................... AGAATACGTCGAGCAACACAAGAAAGACAA 967952 36 100.0 30 .................................... AACTGGACGAGTGCGGATTTTTTTGTTGCA 968018 36 100.0 30 .................................... GGGAACGAAGCGACTTCCGCGCGATCGAAG 968084 36 100.0 30 .................................... AATTGACATCCGGCTTTTTGAGGCCAGACA 968150 36 97.2 30 ...............................G.... AGGCAAAGCCGTCAGAGTGACGACAAATCT 968216 36 97.2 30 ...............................G.... AGGCAAAGCCGTCAGAGTGACGACAAATCT 968282 36 100.0 30 .................................... CTATCAAAGCTGAACAGTTCGATGGTTCTC 968348 36 100.0 30 .................................... TCGTCAGTGCCACGCATGACCACTTCATAG 968414 36 100.0 30 .................................... TTGAGCTTAGCAATTGACGCGGTAAGCTGT 968480 36 86.1 0 ............................TA..A.TA | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.1 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAACTTGATAGTTACCAAACGTCACTCGATAAGATGATTGTCAAAAATCTTAGTATCGAGAAGCGAGATCGGATGAATAACCTTGCTCGAGAGGTGTTCTCAGAGATGCAAGATTCTTTGTTCGAATTCGACTTACCGTTGGAGGCGCGGTATGACGAGAGCCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTGATGAGAAAACAACG # Right flank : ATAGACTAAGGGCGTTGCTGTTTTTAGCAATGCCTTTTTTAGAAGTGATGAGGGAAAGGTAAATGTTTTCACGTTGGTAATCTGACGGGAACTTTAGTGGGCGATGTGCTAGGATAGGGCCAAAATGATTGGAAGTGTTTGCCATGCAAATTGATCCCGAACGGATTCGCCCCGAACTGCGCCGAATCGGCAAGGTGGGGTACGCAATCAACCTGATGGCCAGCCCGCACGCCTGCAACGAATGGGACGAATAACGGCGAAGGCGAAAATGCCCATTCACTCGCGGCGGGTGATCAAACAATACGTTTGGATTGAACGCCCTGACCATAGCAAGCTTCGGCTGGCTATTTTCCGGGCCAAGCAAGTTGCTACCAAGCGCCCGGCCACCGGGATCCTCTGGTTGCACGGGGGAGGCTACGCCTTGGAAACCGCCGAAAATGCCTTGGTTTATGCTGAACAGTTGGTGGCTGACGGACGGTCCGTGATGGTGGCGCCGGATT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1472580-1471270 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070858.1 Limosilactobacillus fermentum strain GR1103 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1472579 29 96.6 32 ............................C TAAATGGCCGTATCTGTCGATACCAATTCTGA 1472518 29 96.6 32 ............................C CCAAAGGTAATGGTTGAATTGTTGCCTACCTG 1472457 29 96.6 32 ............................C TTTAACTACGATTTTGCAAAAGAAAAAGCCCT 1472396 29 100.0 32 ............................. TTGGTTATCATCGATTGCCACTCCAGAAGTTG 1472335 29 100.0 32 ............................. AGATGCCCGGTGACACTATTAACCGTTAGAGT 1472274 29 96.6 33 ............................C CTCGTCATTGCCGAAGGTCGTACCTGGCTTGAG 1472212 29 96.6 32 ............................C AGCACTCGTCAACTCACAAGATCAGACGATTG 1472151 29 100.0 32 ............................. ATACTCAAACTTCTTCGTTCCGCCGAAATACG 1472090 29 100.0 32 ............................. TAGACAGACGGTTTTATCCGTTAAGTCAGTTT 1472029 29 100.0 32 ............................. TCCGATCATCGGAGCTTGGCTTTCAAAACAAC 1471968 29 96.6 32 ............................C GACTTTACCGTCGATGGAGCAGGCGGTTTTAA 1471907 29 100.0 32 ............................. GAGCGAGTAATTTTAAGAGCTTTCGCAACATC 1471846 29 100.0 32 ............................. GAAGAAGTCAACACAGATTATCGACTTGTCAA 1471785 29 100.0 32 ............................. AGCCAGATAGACAATCCGGCCAGCGTCACCCT 1471724 29 100.0 32 ............................. AGTAAGAGCATGTATCCAGTTGCCTTCCAGAT 1471663 29 96.6 32 ............................C AAGTGCCATAATCGCCGTTTTACCAATCTTTT 1471602 29 100.0 32 ............................. TACACGAATCAAGGTAAGAATGCACCACAAGG 1471541 29 100.0 32 ............................. TAGGGATGCGTACATTGGCCAGCTTTGGAAAA 1471480 29 100.0 32 ............................. ACATACCCAGTTTATCCAGTTGGCCGGTTTCC 1471419 29 89.7 31 .............G.......A......C GACATGTGGAAGAGGCTGATCGCCATCCCCG 1471359 29 82.8 31 .......T....A.....A..A...G... GCTTGCCGGGATCCCTGTCTCCGTGTGCCTC 1471299 29 79.3 0 ...T.......TC.A........A....C | T [1471294] ========== ====== ====== ====== ============================= ================================= ================== 22 29 96.7 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAATGGTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : TGCGCACTTCAGTCGCCAGAGGGACTTTAAAGTGCTCATGGGTGATCGCTAAGAAGTTAGCTCGAGCGTATACAACGAAAAAACAGGCAATTAATTTTGTCAGCGACATTTTACGTCCCTCGGGTGCGATAGACTAACTTTAGAGGGTACGTCGGAGCGGTGCCTTTGCCAAAGTCAGGGTCAAAATAGTTAAACGCAGTTCTTTTTCCGTATCTAACCATGAAGAAACCTTTTTAAAGGGAGGATGGTTAGATGCGCAAGAAAGTGCAACAGATTGGCAATCAACAGCGGCATCGGTTTCGGGCGAAATTTTGCCGACTAGGGTACAAGGTGAGCTACGGCCACTTCAAGCCAACGCTTTTACTGACCGAGGTGGAACTTATTGATGATATGGAAAAACCGCAAGTGGTGACTTCACACTTATGGTTTAACTACACGACGGGGTTTCAGCGCCTGGGTCAGTTACAACCGGGTGACGTCATTTTGTTTAACGCCAGGGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //