Array 1 1361082-1358885 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013243.1 Clostridium sporogenes strain CDC_1632 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1361081 29 100.0 36 ............................. TAGTCTATTGCTATATATCTTCTTGCTATTTGTTTT 1361016 29 100.0 38 ............................. GAACCTTACTATGACATAGTGGGAGTTAAAACCTTAGG 1360949 29 100.0 36 ............................. TAGAAAAAAGAATAAAGGAAGAGACTGAGGTTTATG 1360884 29 100.0 36 ............................. GTTGCAGATGTAGCAGCAGAAATAATTGTAAACACC 1360819 29 100.0 38 ............................. ATACTAGAAGCAATATTTAAACAGATTATAGGAGAATG 1360752 29 100.0 35 ............................. ATAATTAACTTCGTCTATAGATTTTGTCTTAGAAG 1360688 29 100.0 36 ............................. CCAAACTTCTTTTCTTAAAGCAGTTTGGTCTTCTGT 1360623 29 100.0 35 ............................. TGGTTGGATTACGATTGCTATAATGGGATTAATAG 1360559 29 100.0 38 ............................. AAGTGCAGCAACCAACACAGGAGACCAAAGTGCAGCAA 1360492 29 100.0 37 ............................. GCAGTAATACCAACTACAAGACCACGACCAAAACTAC 1360426 29 100.0 36 ............................. AAGCATGTAAGAATATTGGTATAGCAAGGTCTACAG 1360361 29 100.0 37 ............................. CTCATAGATACTGGGGAATTAAGAAAAAGTATCATTT 1360295 29 100.0 37 ............................. ACCAGCGCTTGAGTTCTTTGCACTCTATGTTAAACAA 1360229 29 100.0 36 ............................. TTCTTTAAGGTCTTGTAATTTCTTTTCTTTTTCTTC 1360164 29 100.0 38 ............................. GCGGTTGGAGCTAAATCGTCAACAGGTGCAGGTATAGG 1360097 29 96.6 36 ...................A......... TTATTTAAGAGATTGTAGAATAAATATGTTAATTCA 1360032 29 100.0 36 ............................. GTTATCATTTAAGCAGTGTTTGATATTAAAAGTAGT 1359967 29 96.6 36 ...................A......... GAAGCAGACAGCATTATAGTGATTTGGTTTAAATTA 1359902 29 93.1 36 .C.................A......... CTATAGAACCTCCAATAATTCTGTAAAGATATTTTT 1359837 29 96.6 37 ...................A......... CAAAAAAAGATATAGAAGTAATAACTAGCAGCATGGA 1359771 29 96.6 37 ...................A......... GAGATAGAGTTAGAGAAAGAGATAGACATAGAGTTAG 1359705 29 96.6 36 ...................A......... ACGTACCTTTAGGGTCTATGTATTCTTGTACTATAT 1359640 29 93.1 38 ...................A.G....... TCAGATGCCAATTTCAGTACAGTACAAATAAGAAGAAA 1359573 29 96.6 37 ...................A......... GAGTACTATGTTGATAGTCCTAATATTGGAGCCTATT 1359507 29 93.1 37 ...................AC........ CTAGCTACTTTACCATCATCTAATTGAGCAGTTCCTA 1359441 29 96.6 36 ...................A......... TACAGAGATACATAGGGCTGTAAGATTTTTATATTT 1359376 29 96.6 38 ...................A......... ATTAATATTCTTATATCTCCTTCTTTAAAAGCATTTAT 1359309 29 86.2 38 ...................AG..A....G TGTACTAGAGAGCAGGCAGTGGAATTTTATGACAAAGG 1359242 29 86.2 37 A..C....C..........A......... TCTATCCAGGTACCTTTATTTTTATATTTCTGTTTTT 1359176 29 86.2 37 A........C........T.G........ TTATAGAGCTTGCTTTTTTTGCACCTGTTTGTAGTTT 1359110 29 86.2 38 A...............A...G...C.... TATGGTATTGTATAGTATTCCTCTCTTATTATCTAATT 1359043 29 93.1 37 A..................A......... GTAACAAGAATTAATGAAAAAATAGGAGATGTAGTAT 1358977 29 89.7 35 A................A..G........ ATTGGTGTACTTGGATCAAATCCTTCTGTTATTGA 1358913 29 86.2 0 A................CA.G........ | ========== ====== ====== ====== ============================= ====================================== ================== 34 29 96.1 37 CTTTTATATTAACTATGTGGTATGTAAAT # Left flank : AGGAGATGATATATATAAACCATTAAAGGCTTGGTGGTGATAATTTATGTTTGTTATATTGACATATGATATAGAAGAAAAGAGAATTAATAGAGTTAGAAAAACTCTTAAAAAATACTTAGTTTGGACTCAAAATTCTGTATTTGAAGGAGAAATAACAGAAGGGAAGCTACATAAATGCCTTTCTGATGTTAATAAATTAATTGACAAGAAGTTTGATTCAGTATATGTTTATAGAGTAAAAAATTCTAAAAATATAAAAAAGGATGTAGTTGGAATAGAAAAGAGTTTTGATGAATTATTTTTATAATTAGTTTTGCATTAAACCTAAATTTAAATTAATTAAGGTTAAACTATTGAAATTACTAGCTTTCTTGACAATAAAAAATAAATACTAAAAACGCTACTGAAGGTTTACTGCAAAATGTGGAAAATATGATAGATTAAGCATTGCTATAAATACAGTAATGGCGGTGGTTACAGGCTTTTTGAATTTTAGG # Right flank : GTAGATCCCATAGCACCAATTGGATTTAAGTCAATATAGTAGACACAAAACACGAATTTTTATGAAGTTTTCTTTAAAGAATCTTCAAGTTGTTGTGGAGTCATGTAACCAATACTGCTGTGAAGTCTTTTTCTGTTATATCAAGATTCCATGTATTCAAATATTGCAGACCTAGTGACATCAAAATAATAATATATATCTAAGTTTACTTCTTACTTCTTTAGCGAAGCATAAAAAGATTCAATGTAGTCAGTATCATAAGGACAATCTTTACCGCTGGAAGAGTGAATTATATTAATTCCTTTAAAATATTCTCCCAATTTAGAGCTTGCATATTGAGAACCTAAATCACTATGGAATACGACAGTACCCTTCGGTTTTTGAGTCCTGGAGGCATTATCTACGGTTCTGTATCCATGGTTATTAAAAAAGCATAGCATATAATTTTCTTTGAGTGAAGAATGTAGATACTTATTTGTAGTAGAATCTTCAGAAATTTT # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : CTTTTATATTAACTATGTGATATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [28-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 4019279-4019621 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013243.1 Clostridium sporogenes strain CDC_1632 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 4019279 29 96.6 36 .................C........... ATATGTATATTTACAAATGAGAGAACAAATTAATTG 4019344 29 100.0 38 ............................. GTATCTTATTTTTAGGTAAAACCTCTCTTAAATTCTTG 4019411 29 96.6 37 ................A............ TTTTCTATTCTGCAACTCTCTTATAAAAAAAGAACTC 4019477 29 96.6 22 ............C................ AAATAATAGTACATAGTTGTAC Deletion [4019528] 4019528 29 100.0 36 ............................. TTATTTTTTCTTCATTAAACAACCTCCTCATTAAGG 4019593 29 89.7 0 ...........A.......A........T | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 96.6 34 TTTAAATACATCTAATGTAGAAGTTAAAC # Left flank : AGGACAATAAACGTTTGCGGAGTTTAGTTTAAATACATATAATATATAAGTTAAGCTATTTTCCCTTTCATTAATTAAATAAAATAGGTCATTAAATACATCCAATGTAGAAGTTAAACTAAAAAAGTAATAATAAATTATTTTAAATACATATAATGTACAAGTTAAACCACCTTATTCCATTAGCGATATTCCAAATATGTGTTGTTTAAATACATCTAATGTAAAAGTTAAATGTTTTATTTTTTTATAAATCTGCTATTTCTACTGCAAAAATAAATCCATGTGAATCTCTAACTATATGAGTAAAAGATAAATTTCCCTTAATCTCCATAAGTATATTTAAGTTACTGTTTTGATAATCAGTATTTAAGCATGTTAAATCACTTCTATCACAAGGGGTATCATTAGGTAAAATGTTAACATAGCAAGCTCTATCTATGCTTTTTTTCTTCATTTTTGCACCTTCTCTTTCTCTATTTATATTTAAACTTATACTT # Right flank : TCAATAAAAATAAGCTGTTTGTAAATAATAAAATGTTTATATAATTATTATAACATGCTTTCATTATATGACTTGTGAACTACCACCACCTAAGAGGTGGATGGCTTCGTGATCAATACTACTACTGTAGCAAGTTTACTCACGCTCAAAAGGTCGAACCAACCTCGCTTATTACCAAAATTATATAGCTAATTTCAGTACTATCCATCTCCCACCTAAGAGGATGGGAGAATTACGCCCGTTAAGTTAAATTTTTAAAAGAAATATAAATTACTTAGTGAATCCTGATAAATTAATGTTTTACCAGTATTTGGTTGAACAATGAGATTAGTAAAAGATAAATTGCTAAACCTGTAAGAGTTATCGAATTCATCTAATTCAGTTGGCAACATTTCTTTTAATATTATTAATCTCTCATTAGGATTATATTTTTCTCCTGTAATATTAAAATTATCCGTTAAAAATAAACTTTGTATTCTTATTAATTTTTCATGTGCTTG # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.14, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAAATACATCTAATGTAGAAGTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //