Array 1 63271-61381 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJI01000012.1 Moraxella catarrhalis strain 79/220/2 NODE_12_length_63310_cov_22.782885, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 63270 28 100.0 31 ............................ TTTCATGCAAAATGTACCCCCTTTGTGCAAA 63211 28 100.0 32 ............................ GCTTTTCAATTTTGATTTAAAATGGCTTTTCC 63151 28 100.0 32 ............................ ACTTGCCCAGTCTGTCCAATCGCTTGTATTGC 63091 28 100.0 33 ............................ AATCGCACAAATCAAAGCATTGATAATAAGTAG 63030 28 100.0 32 ............................ TCATTGTACCGCATATTGTGCGTAAGCTTAAA 62970 28 100.0 32 ............................ CTCGCGATGTCGAGACATTTTTACTCCCCATT 62910 28 100.0 32 ............................ ATGCGAGCATGCCAACGGCGACAAGCCACGCT 62850 28 100.0 32 ............................ AATCACGGTCTAGCAGATGGCGATGATGTGGT 62790 28 100.0 32 ............................ AGCGGACAAGTTGTCAAATCTTGCCCCGAGCC 62730 28 100.0 32 ............................ ATCAGATGATGGCAGGTGGTTTTTTGATTATT 62670 28 100.0 32 ............................ TGCTTGTTCACGCCCTGCCTGTGGACTAAAGT 62610 28 100.0 33 ............................ ATTCTGCGGCTTTAACAACAGATTCTGGAACAT 62549 28 100.0 32 ............................ ATGACAACAAAAAGTGAAAGAGTTAAGCTTAC 62489 28 100.0 32 ............................ TGATAAATCTACACCACGATTTTGTAATTCAT 62429 28 100.0 32 ............................ CAGCTGGCAGGCAAAGCAAGCACAGCGTCAGT 62369 28 100.0 32 ............................ TTTTAGCGTGGGCGTCCAATCAACTGCGTCAA 62309 28 96.4 32 ....................A....... TTTGCCATAAATCTCACGCACGGACTGCCGTC 62249 28 100.0 92 ............................ CGCCACTTGGGCAGTGGGTGGCTGAATCATGGTAATTATTTGGCGTATGGTTTGTAGAAACGCCACTTGGGCAGTGGGTGGCTTGGCTTGTT 62129 28 100.0 32 ............................ GAAAGCTCTGTGAGTGGTAACACATCTAGTAT 62069 28 100.0 33 ............................ TAGGTGTAAAATATTACACTTTTTACATTCCGT 62008 28 100.0 32 ............................ ATTAACGATTGCCGTTGTACTTAACCGTTCTT 61948 28 100.0 32 ............................ CACACTGATGCCACATGCCGTCAAAGGCGATA 61888 28 100.0 32 ............................ GTTAATGCGTCTTGGTGTTGTCAGTTTTTGAG 61828 28 100.0 32 ............................ GTGTTTTATCAAATCAGCACCGATAAGCTGTA 61768 28 100.0 32 ............................ AAGATATACCGGTAGGGGCAGGCAGGGTAATA 61708 28 96.4 32 .C.......................... ATACGCTCAAACCGACCGATTTGAAAGCAATT 61648 28 100.0 32 ............................ AGACTTTCTTGATTTGGAAAAGCCATTTTAAA 61588 28 100.0 32 ............................ GATAACATTGTCATCGCTCATGTTGAAAATGA 61528 28 96.4 32 ...........T................ CACCCAAAGACATTTCAATTCAGTTACTTAGA 61468 28 100.0 32 ............................ GTTGAGCTGTATCCTCTGATTCTCTTATTGAT 61408 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================ ================== 31 28 99.7 34 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : CTTAGAAAGCTAACAGAGCTTTCAACTGTGTTAATGCGT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1610-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJI01000006.1 Moraxella catarrhalis strain 79/220/2 NODE_6_length_93914_cov_24.291341, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1609 28 100.0 32 ............................ TGACAGCCAACACTCAATCAATCATGAGCCTT 1549 28 100.0 32 ............................ CAGCGTCAATCGCTGGGCTTAACTGTTGCAGA 1489 28 100.0 32 ............................ CAAAAGCTCGGTAGCTAAATTCCCCTGCTGCT 1429 28 100.0 32 ............................ ACTGCATCATAAAAACGATAAGAGAACTTGTC 1369 28 100.0 32 ............................ TCAAAACTTTGGTTGATTGTGGCATTTCAAAA 1309 28 100.0 32 ............................ ATATCGCTAAAATCTGTGCCAAGCGTATCATA 1249 28 100.0 32 ............................ TATGAAAGCTTTGTTTGTATCTCTTATGCTTT 1189 28 100.0 32 ............................ ATAGCCTGCCAAAGTCGTTGGCTTATCAGTAA 1129 28 100.0 32 ............................ GTGGCAACCGCACATGCCATCCAACACTTGCT 1069 28 100.0 32 ............................ ATCAAAGGCAATGCCGTTAATCCGTCTTGGTG 1009 28 100.0 32 ............................ ATTTGCTAAAACTGGTTTTCTCATCCATTCTT 949 28 100.0 15 ............................ ATCGGTTTGCACATC Deletion [907] 906 28 100.0 32 ............................ ATAAGGCCAATACCTGCACCGATGAGTGCCGC 846 28 100.0 32 ............................ ACGCTGTAAAGCGTTTAATGTTTTGAGCGTCA 786 28 100.0 32 ............................ TAACAAATCATCAAGACCACCACCGTCTCCGC 726 28 100.0 32 ............................ AAGAACTAAACGCCCAAGCATTTGACGAAAAA 666 28 100.0 32 ............................ TATCGCAATTTTGTTAAAAATGTGATACCCTT 606 28 100.0 33 ............................ CCGCTCCCCAACCCCACCGAGTGAACAGGTATG 545 28 96.4 32 .................C.......... TATTAGATAGCTGTACAATACCTGCATTATTT 485 28 100.0 32 ............................ ATGCTGTTATCGCGCTCATCTTTGGGCAAAGA 425 28 100.0 32 ............................ ACTATTTATAATAAGATTTCTGCCCCCAGCGG 365 28 100.0 32 ............................ GCTAACAGAGCTTTCAACTGTGTTAATGCGTA 305 28 100.0 31 ............................ TTTCATGCAAAATGTACCCCCTTTGTGCAAA 246 28 100.0 32 ............................ ATGCTGTTATCGCGCTCATCTTTGGGCAAAGA 186 28 100.0 32 ............................ GTCAAATCTTTTTGAGCTGATTAAACTTCAAA 126 28 100.0 32 ............................ ACTATTTATAATAAGATTTCTGCCCCCAGCGG 66 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : AGCTAACAGAGCTTTCAACTGTGTTAATGCGTACTTCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //