Array 1 28785-26237 **** Predicted by CRISPRDetect 2.4 *** >NZ_QECC01000004.1 Vibrio cholerae strain OYP4D10 Vc_OYP4D10_Contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 28784 28 100.0 32 ............................ TTTTTCAAAATACCAAAACAGTCCTGAATCTA 28724 28 100.0 32 ............................ TTTTGGCATGGCGAAGAGTCAGAAGTTTTCGC 28664 28 100.0 32 ............................ TCTCCAGACACGCCATCTTCTTGAATTAATCC 28604 28 100.0 32 ............................ TCACTTAATGAATTTTTTCTTTGCCAGAATTG 28544 28 100.0 32 ............................ ATCCTTTTGCTATCCGTTTGCCATCCATTTGC 28484 28 100.0 32 ............................ TCTTACTGACGAGCAAATAAAGCAGCTTGGTT 28424 28 100.0 32 ............................ AGTCGAGATTTACGCAGGGGTAGCCCGTCTAA 28364 28 100.0 32 ............................ ATTAAATTAAGAGTGCAACATTTTTTAGCATT 28304 28 100.0 32 ............................ AATATAAGCTTCTGGTGCATCATGCAAAAGGC 28244 28 100.0 32 ............................ GGAACTGGAAAAACCCACTTAGCCGTGGGTAT 28184 28 100.0 32 ............................ TCTCTGGCGCATTTGCATGAGCTGTTGCAGTA 28124 28 100.0 32 ............................ TCAAGCAGAAACAAGATCCGACGCATCTCTGG 28064 28 100.0 32 ............................ TTTCTTGGTGTCTAACTCCACTACTGACGGCG 28004 28 100.0 32 ............................ TAACACGCTTCCGGTTTGCACTCGTGCCGGTG 27944 28 100.0 32 ............................ AGATTCACGCGCTACAGACTGAGCGCTCGCCT 27884 28 100.0 32 ............................ AATCACATCGCCAGCCGGAATCATAGGAAGCC 27824 28 100.0 32 ............................ GATAGTACGTTTTGCAAGGTACGCCGCGCTTC 27764 28 100.0 32 ............................ ATCTGGCAGTAATCGCCCATTGCCACGGCCTG 27704 28 100.0 32 ............................ AGTAACCACTAAATACCAAGCCGGATTAAGAA 27644 28 100.0 32 ............................ GCTTTGCGGCTGTTCTTGTATTCGAGCTGACA 27584 28 100.0 32 ............................ TTTGTTCATGCCCAATGCGCCATCAACGGCTT 27524 28 100.0 32 ............................ GTTATCGGCGATTAACGGCGTTGGCGGCTCTG 27464 28 100.0 32 ............................ TAGATGTAGTTATCAGGGTTTAGACCAAATGC 27404 28 100.0 32 ............................ TCTAGCTTTAATAGCAAAGAGTAGCATTGAAC 27344 28 100.0 32 ............................ ATTAGTGGTTAGCTTTTTTTTCGCCCAACGAT 27284 28 100.0 32 ............................ TTCAGCGATAGCGACGGGACTTTTCTCACAAG 27224 28 100.0 32 ............................ TCGAATTGATAACCCATCTTTTCTAAATCTAT 27164 28 100.0 32 ............................ GTTGATATGGATGGATAGGATCGTAAATCCTA 27104 28 100.0 32 ............................ TTTATGTTAAAGCACCCAAATCCATCGCTTTT 27044 28 100.0 32 ............................ AGTTCTAATAACAAAACCGCGCAGTTCGATAG 26984 28 100.0 32 ............................ AAAAATCTGACCTTCCCACAATATTCGGCATT 26924 28 100.0 32 ............................ TAGCATTTGCAAAATGCCTCTGTAGCCTTGCA 26864 28 100.0 32 ............................ TAATGCTCATTTCAATAGTCTTAAAATGCACT 26804 28 100.0 32 ............................ AAAAAATCAGGGAGTGGGGCGCAAGCTTCGCG 26744 28 100.0 32 ............................ TTAATAGCCGTGATCGCCATGCGCCAGATTGG 26684 28 100.0 32 ............................ TTTACGGCATAGTCATATAAAACAAAATCACT 26624 28 100.0 32 ............................ ATTGCCGACTTTGACGCTGCGCTTTTGCTGCG 26564 28 100.0 32 ............................ TCCCACTCAAAATCTTGTTCAGAATTCCATTT 26504 28 100.0 32 ............................ TTATCTATGATTAAAGACGCTCACGACCGCCT 26444 28 100.0 32 ............................ TGTAAAGCAAGCATGTTTAACGTGCCATTCTC 26384 28 100.0 32 ............................ TTCATCGGTAATCAAGGACACTTTGGGATCAA 26324 28 96.4 32 ...........T................ ATGCCTTTGGATCGTCGTGAAACTTGCGGTGT 26264 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================ ================== 43 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACCGCGACAGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTATGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCACATCATTGGTTTTCTACGTTCGAGATAATCCGTGCGGTTATAGGCACTTCGAACTTGGTTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //