Array 1 654371-654819 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKGK01000002.1 Burkholderia plantarii strain ZJ171 scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 654371 28 100.0 32 ............................ AGATCGTCGCCCCCCCACACGCCGATGCAGTG 654431 28 100.0 32 ............................ TGTGCCGAAATCGAATGGCGCGTCGCCCGTGT 654491 28 100.0 32 ............................ TGCACCGGCGTGACGTTGACGCGCAACTCGTC 654551 28 100.0 32 ............................ ACAACCGAATATCTCGAAGCCGCCGGCTTCGT 654611 28 100.0 32 ............................ CGTTCGGCTGCAGTTGGGTGGACGAGAACGCC 654671 28 100.0 32 ............................ TGTCTGCTCGTGCTCGGCATGATCCTGCGGGG 654731 28 100.0 32 ............................ TTCCGCCACGTCCGGCTCGGGCGCGTCGAATT 654791 28 85.7 0 .............C......TGC..... | T [654817] ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.2 32 GTTTGCTGCCGGATAGGCAGCTTAGAAA # Left flank : GCAGCACTTCCGAAGCGGTTTTCACCAGCGTGCGGAACGCGGCCGCGTCGAGGGGCTTCGGATTCTTCTTGTCGCGACCCATCGTCCAGGGGCCGACCAGCGCCGGCTCGGCCTCGCCGTCCTTGATCATCGCGACGGCCCAGCCGTCGTCGTCCTCGTTCTTGATCACGCGTGCCGTCCAGCCGTTGTCGTGCCAGAGGCCGTCCTCGTGGATCGGGTTGTCGTCCCGGGCTGCGTCGGTGTCGGTGAGGTGGTCGGTCATGAGGCTTCGGCTTCGGTTCGGGGGCTTGGGTGGGCGCGTATTGTAAACGTTTCGATGGGCGGGAATGGGGCGGGGTGACGCGGGTGGTTGGGGTGGTGACCTGTGAACCCTTTTTTCGGCAGAATGTGCGAAGGGTTGGAAAATCAATGAGTTGGCGAGGGGTGGTGAATTTGGGGTGGCGGAGCGGAGTGATGGGAATTCGTTGTTGAATCAAGGAATTAGGGGATTTTTTTGTCCA # Right flank : ACAAAAAGACAACCAGACACATCCGGAATCCCCCCCTGTGAGGCGGATTAAGAATCAGACCTCGACGTTGAATCGCTCCCGGGTAAAGCAGTGCAAACTGCGTCGTCGGACGTTTCCATTCGTGCCGGGAGCCGGCCCATTTCGCAACGACGTTGCGCAGGGCCAACCCAATCAGTTTGAGCGGGGCCTGCCCGAACCTTTCCACGCTTTTTCAGGGGATCAACATGACTCGGCAACTTTCATGGGCTGACGCAACGGTGCGCGACGAACTGGCGGCACTGCAACGCGCACAACCATTCGTCTACGGCCTGACCAACTACATCGCGGCCAACCTCAGTGCAAACGTGCTGCTGGCCGTGGGGGCCGCACCCGCGATTGGCGCCGCGCTGGACTGGCCGACCTGCTTCGCTGCCGCCGCAGCCGGGATGTGGGTCAACGGTGCCGCGCTGATCAGCAGCGCACCGGATACGCTCGAGACGGCTGCCCGGTCGGCACACGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 665077-665885 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKGK01000002.1 Burkholderia plantarii strain ZJ171 scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 665077 28 100.0 32 ............................ TGACAGTCGAGCGGGATGCCGTATGCGTCGTG 665137 28 100.0 32 ............................ ACCTGCACCGGCTGCGGGAAGCAGTTCACTCG 665197 28 96.4 32 ......A..................... ATGCGCTTCCACTGCCGCTGCCGCCACTGCGA 665257 28 100.0 33 ............................ TAACATTCCTCTCAACGCAGCGCCACCCGCGAT 665318 28 100.0 32 ............................ ATGAATCGCGGCGTATCGGTGGACGTGGTGCT 665378 28 100.0 32 ............................ TCGAAGGAAATGGAGAAAGGCCAGATTGTCGA 665438 28 100.0 32 ............................ TTGTCGCCTTGCGTTTGCGTCTTGACCCCGCC 665498 28 100.0 32 ............................ TCGCGAAGTCGCGCTTGTCGATCTGGCCGATC 665558 28 100.0 32 ............................ TGTTTGGACCGGTTCCTGTCCGTGCCAACCTT 665618 28 100.0 32 ............................ TTGAAGAACCTCCATGCCTCGAGCAGCGCCGC 665678 28 100.0 32 ............................ AAGCGTGGTCGTGAGAGTGGCGCCGACAACCG 665738 28 100.0 32 ............................ CTGACGGCGGGGCCGAATACAAGTGCTTCGTC 665798 28 100.0 32 ............................ ATATCTATGCCGAGCCGGCCGAAATCATGATC 665858 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.5 32 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : TGGGTTTGCGCGAACTGATGGCGCAGCCATGGTTGCAGGGGATGCGCGATCACGTTGTGGTGGCCGAAGCGGCGCCGGTGCCGGCGGGGGCGACGCACCGGGTTGTGCGGCGGCGCCAGTTCAAGACCAATGCCGAGCGCTTGCGCCGCCGCCGGATGCAGCGCAAGGGGGAAACCGCCGAGCAGGCCGCGGCGCATATTCCCGATAGCGTCGAGCGGCGGCCGGATCTGCCTTATGTGCAATTGCGCAGCACGAGCACTGGGCAGGGGTTTTGCCTGTTTGTTGAGCAGGGGAATGAGGGGCGGGAGGCGGTAGCGGGAGCGTTCAACAGTTACGGGTTGAGTCAGGGCGCGACGGTGCCGTGGTTTTAACCCTTTTCTGTGGCCGGAAAAGGAGGCTTTAAAAATCAATGGGTTAGCGAGGAGGCGAAAATTTGGGTGTTTCGCTTCCTTGGCAGAGTTTTGCTTTTGGAAACATAGGGTTGGGTGGTTGGGAGGGTA # Right flank : AATATCGAATGGCCGATTCCAAAAACTTGGATGATGGACGCCACCTGCACTGGCTGACCTACAGCACCGGCTACGTGCATAGCCTGCAGTTGGGCATGGCAAGGCTGGCTGCGTGAACAAACCCTAATGCGCGCCGGCATCGTCGAAGCTGAGCTTGCGCGCGATCGTGAGCCCGGCCGGCGAGCTGAAATCGAGCCGCACCAGCCACACGCCCGGCATTTCGAGCGCGAGGCGGGCGTGGTAGACGCCCGGGTCCGCACCCGGCACGGCCGCCACCGGCGTCACGTTGTGCGCCATCGGCATCGACGGCATGTCGGCGCTCACCGTGAAGCGCGCGTCGCGCAGCGGCGCGCCGCCGGGCGCGGCGAGGCGAATCGTGCAGTCATAGGCGCCGTCGCCGCCCGCGCGCGAGCAGCCGATGCGTGCCGCGGGCGGCGCCGTGGCCGCATTCGCGAACAGCGGCGCGATCACGAGCGCAATCGCCACGATTGATTCGAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 993704-993256 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKGK01000002.1 Burkholderia plantarii strain ZJ171 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 993703 28 100.0 32 ............................ CGTCAACTCTGCGGAGCCGTTGATTCGCATCA 993643 28 100.0 32 ............................ ATCGGAAAGTGCATGAAGCCCGGACCGTGGTT 993583 28 100.0 33 ............................ TTCTGATTACCACCACGGCGTACGCGTCATCGA 993522 28 100.0 32 ............................ TCGATGCGCCGACGTTCACGCCATCGCTGCGC 993462 28 100.0 32 ............................ TTACCGGTTGAGCCCGGAATGATCGTCACGGC 993402 28 96.4 32 .......A.................... AGCAGCATGACGTGAGTTGCAAAGGGAAAAGA 993342 28 100.0 32 ............................ GTTCGGCAATCTCACGCGCGGATTGAGATCGG 993282 27 85.7 0 ............AC..T......-.... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.8 32 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : GCCAGCACCACGCTCGGACGATTGCGGTACGCGCCGGGCCGGCCGGGTTCCAGGTCGGGCCGGGCGGGCAGATATTTCGCATCGAAGCGCTCGCGCGACACCACCCAGCGGTCACCCGTCGAGCCCGTCACGAGCGCGTCGCCGGCCGCGTAGCGGTTCGGGCCTTCGAGGCTCATCAGTTCGCCCGCCTCGGGCGCGAATTCGACTTCCACCGTTTCATTCTTGACGACGCGTTGCGCGGCCGGGTCCGTGCGCAGGTCGATCTGCCTCAATTCGATCATGATTCGCGTGCTGGTCGGTGAAAAGCACGCACTGTAGCGTGAAATCTGGTGGCTGTGGGATGGTGCGAGGCGGCCGGGTTGCGCGATGAACCCTTTTTTCGGCAGAATCTTCGGAGCCTTGTGGATCAAGGGGTTGCGGCGAGATGGGAAATTTGGGCGGGAAGGGCGTCGGGTGGCGGAAGTCTTTTAAAATCAGTGGGCTGTGGGATTTGGTGGCTA # Right flank : AGCCGGATGCAGTCCAAAAAGGTCAGCGACGACACCCGCTTCCACCCCAATCACGCTACCTCTTTCCACAAAAAAACGACGCAAAAAACCCGGCCCACCGCGATATCGCGGTGGGCCGGGCCATCAGCGTCCCCGGGGCGCAGCCCCGGCTCAGCCGTCCTTACTGCGCAGCCGGGGCGCTGGCCGCGTCGGCTGCCGGCGCGGCCGGCTTCTTCATGGCGTGATGCGGTGCGCGCTTCGCGGCATTCGGGCCGTGATGCTCCCAGCGCTCGCCGAACGTCTTGTCGGCCAGTGCCTTCTGCTCCGGCGACAGCGCGTCGTAGAGCGGGCTGAACGTGTCGACCAGCTTCTTCGCGCCATCCGCGTTCGCCTGGGCGATTTCGGCGTATTGCTTGACGTCGTCGACGGCGGTGGCCGTCTTCTTGTTTTCCATGCGCTCGCCATAGAGGCGGCCCATCGTTTCGCCGTTGTCGCGCATCGTGTCGGCGAACGGCTTCCAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //