Array 1 1-1370 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEAT01000014.1 Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1 27 96.4 33 -........................... TCTCATGCTAGACATGACGTAAGGTATGACAGA 61 28 100.0 33 ............................ TGTCAGTTGTGATCGTCCCGGTTGGATATACCT 122 28 100.0 34 ............................ TCAAGTCAGCCGTCAAATTAGCGAGATTTACTTG 184 28 100.0 33 ............................ TATAACCAAGATTGTAAGGCAACTGCTGAAAGA 245 28 100.0 33 ............................ TGACGATGAGTGATCTAATCAAGGTTGACACCG 306 28 100.0 33 ............................ AGTTGTTTCTTTCTCCCAGAATATTAATGAGGA 367 28 100.0 33 ............................ TCAATCACTTAAATAGCGCCACGGATAATAGAA 428 28 100.0 33 ............................ TTACCGCCGATACCAAAAGGCGCTTTACCACCG 489 28 100.0 33 ............................ TCTAGATCATGCTTACTTTGTCTGCGTTAGTTT 550 28 100.0 33 ............................ CCAAGTTAAACCACCTAAGAACGTTGTCGTAAG 611 28 100.0 33 ............................ TATCACGCAATCAATGAGCGCCTCCTATGTCAT 672 28 100.0 33 ............................ TTAAGGGCACAGCACGCTCGGTTTGGAATGGTA 733 28 100.0 33 ............................ CAAAAGTAACATGCGCATTCATTCCTTCAGAAA 794 28 100.0 33 ............................ CAGCAAATCGGATTATTGTTGCTGATACCCCGC 855 28 100.0 33 ............................ TTACGAATCCGTCAAAGACGCAAAACAAAATCA 916 28 100.0 33 ............................ ATCTCAGAGCTTCGTTAACGACACAGGCATCCA 977 28 100.0 33 ............................ CGTGCTCTGCCAGAATGCATGACCGTTTGACGT 1038 28 100.0 33 ............................ CAATCAAGCCGTATTCAGAGTATGTGGCTAAAG 1099 28 100.0 33 ............................ CAATCGACTTGAAATTCCCGGCTAATGAGCCGG 1160 28 100.0 33 ............................ TTTTATCTGCGGTCAAGTGTGTGATTGTGACTT 1221 28 100.0 33 ............................ TCATGTAGCTATTGCCCAAGTTTTCGTTTGTGA 1282 28 100.0 33 ............................ TGGTGTTTGACGACCACTCTGCGCTTGACCCAG 1343 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 23 28 99.8 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : | # Right flank : T # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33-487 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEAT01000023.1 Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33 28 100.0 33 ............................ TCATAGCCGGCGCGGTCTAGTAGCTTGCGGGCT 94 28 100.0 33 ............................ CTTTTGACGGGCTGTTCATCGGCGACTACTGGA 155 28 100.0 33 ............................ TCCCAGTTCCCGCTCTTCATGTTCAGACCGGAT 216 28 100.0 33 ............................ CTACTGGACGATCGGTGGCGTCAACTACCGCAT 277 28 100.0 33 ............................ CAAACCTCAGTGAACGGGACCTCAAGCGGGTCT 338 28 100.0 33 ............................ TTAAGTGTCATTTGACAAGCGCTTAATCACATC 399 28 100.0 33 ............................ TTGCGCTGGCCTGGTTCCCACGTGATGACCGCA 460 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GTCAGTTGTGATCGTCCCGGTTGGATATACCTG # Right flank : CGAAATGGTGATCGGGCAGGAGTTTATCACGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11869-13482 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEAT01000013.1 Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11869 28 100.0 33 ............................ CATTAGCACTCCAAACAATAGAGTGCTAATCCA 11930 28 100.0 33 ............................ CGCTAATGATGCAATCAAGCTTGGCTTCGCGGA 11991 28 96.4 33 C........................... TAGGAGGTAAAGGAAATGAGAAGAAAAGAATGT 12052 28 100.0 33 ............................ CAATTGACTCACTTGCCACATCTACAAGAACGT 12113 28 100.0 33 ............................ CGCTAAGCTGCACGAACTTAAGGTTCAGTACAA 12174 28 100.0 33 ............................ TGCACTTGCCAAGTCAATATAAATCTTGGCCTT 12235 28 100.0 33 ............................ TCGGCTACGCCCAAAAAACGGCCTTGCAACTCT 12296 28 100.0 33 ............................ TGGACACGATGGACTTGCAGAAGCACGACACGG 12357 28 100.0 33 ............................ TAAACAGAAGCAAAGCTGGTAAACATTAGCACT 12418 28 100.0 33 ............................ TTCCCCGTCCGTATCGCTTTTGAATGTCTTTGG 12479 28 100.0 33 ............................ TGTACGCACAAAGAACCACGTCTAGCCAAATCA 12540 28 100.0 33 ............................ CATGGACGCCGTTCTTGAAGAGATGGACACGAT 12601 28 100.0 33 ............................ TGATCAAAACGACCGACAAAAACGGCAAACAAA 12662 28 100.0 33 ............................ TACGCAAAACAGATCAAGAAACAGCAAAAGGAC 12723 28 100.0 33 ............................ CTGACTACAGTTTACCATGCTTTTTAAAATTTG 12784 28 100.0 33 ............................ CAGCCGCGGCGGGGTGGATATTGTCATCGACGG 12845 28 100.0 33 ............................ CGGTAACCGGCAAGCGGATTTCATTCCGTGCGT 12906 28 100.0 33 ............................ CATATGTGGCTCTCCAGCTCTTGCGAAAATTGC 12967 28 100.0 33 ............................ TTATGAAGGAAAACAAAGCAGTTACTACTAGTT 13028 28 100.0 33 ............................ TCAACACCGTGATGGATCATGGAGTTGGCATCG 13089 28 100.0 33 ............................ TCACGGCTTCCCTGCTCCCCTCTTCGGCGGTGA 13150 28 100.0 33 ............................ AATGGAAAACGCAAGCCAAAATGGGAAGCGTTG 13211 28 100.0 33 ............................ TGTCATTTTTGGCAAAATAGGGCAAGATGTGAA 13272 28 100.0 33 ............................ CACAGCCCAGGTCTTGATGAGTCAACACTATGT 13333 28 100.0 33 ............................ TTGGAACTACTCTATTCGACCTTCTGGTCTTCG 13394 28 100.0 33 ............................ TAACCAGCTTGTTTTCGTGCTTCAAGTCGATGA 13455 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGATTGAATACGGAAAGTGATCAGATTTTGTCTATTGGCGCGGTGAAACACGATGGTACAGAATTCTACCGACTGATCAAGCAAGATATTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATAACTCCAGCAATGCTGGATAAGGATGGCGTTCCACTGCAAGATGTTTTGGGAGAACTAACTGACTTTGTTGGGGATGTGCCAATCGTTGGGTATAATTTTAGATTCGATTCTGCATTTTTGAATAGGGAATATCGGAAATGCGGGATGCAAGAATTAAAAAATGAGATCAAGGATTTGCTGCCAGTTGTAAAAAGAAAAGAAAAATTTCTGGACAACTATAAGCTACAGACTGTATTATCAAACTACGGGATCGAAAACAAGGTGCCGCATAATGCTGTGTCTGACGCAAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAAAATCGCATTTTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : CCGCGAGTACAACCCAAATTGGCGGACCACCTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34-1145 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEAT01000100.1 Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 contig00058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================================== ================== 34 28 100.0 33 ............................ TCGAGTTGCTTAGTATCCACCCTTGGCCTCCTT 95 28 100.0 33 ............................ AAAAGCAAGGAGGTTAAAAATGAACGTTTTAAG 156 28 100.0 33 ............................ CGTAGATGCAAGCATTTTTTGGATTTTTTTCGA 217 28 100.0 33 ............................ CACAGAGTCCCAGCTCCAGAACTACGCAGCCAA 278 28 100.0 33 ............................ TCCAATTCACAAGCGTAGCAACCTAAGTCATCG G [300] 340 28 100.0 33 ............................ TGAACGGCGTTGCAGTCCAGTGCGATTCACTTA 401 28 100.0 33 ............................ TGTCTCAAGCTGGGCAGATGCTGGACTCAACTG 462 28 100.0 33 ............................ CTTTGCCGCTTCTGCCGCAACTACTGCTGGCAA 523 28 100.0 33 ............................ CATGGTGTAGATTTCAGACCCAGCCGTTACTTC 584 28 100.0 33 ............................ GTTCCGTTAACACCGAGCATGTACTCGATGCTG 645 28 100.0 33 ............................ TCGTGGAACTGGATGAAAAGTGGAACTGGATGA 706 28 100.0 33 ............................ TCATCTTGTTTCCTCCATCATCTCGATAATCAT 767 28 100.0 33 ............................ GGTAGGCCAAGCTGACAAGACAAGCATCACGAT 828 28 100.0 33 ............................ CAAGCACTTGATCCTGGTATAGTACACCATCGG 889 28 100.0 33 ............................ TCAAGGCCGGCCAATTTGACGCCGTGGAACTTG 950 28 100.0 79 ............................ CTTTATCATGGTAGACACGGCGACCCGTACTATGTATTGGTGATCCCTCTCGAGGGCGTTATGCAGGCTATCGATGCGG 1057 28 100.0 33 ............................ TAGCTCGTCTTGAACAGCATTTAGTAAATCGCG 1118 28 85.7 0 ............T.T.......CA.... | ========== ====== ====== ====== ============================ =============================================================================== ================== 18 28 99.2 36 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : TGAGTTGAATCAACTGGATGGAATCATAAACCAG # Right flank : CGTTCTTTATGTTATTGTGCTTTTCGTACTGTGTATTTTCCATACATATGCCGCGATGATCATAAGTTTCAGTTAAAGCACAAGCAAATTTCAAGGATCTTTGGTAGAGTAGAGGTACTAGGGAAGGAGTGAGGAACAAGCGTGAGCATTTACGGAAAGTATGCCGACTATCTTCCACAGATTCTGGATTCTGTTTTGCAGCAAATCCAAGGCATCGGTCAGGAGTATAGTGCAAAACACGGGCAAAAGCTATATGGGCACCTGGAAGGTCGCGTCAAAGGAGAAGAAAGCATGACGCAAAAGTGCGAGAGAAAAGGTATGCCGCTGACGCCAGAGTCTGCATTGATCGAAAATCGAGATGCGATCGGCCTCAGAATCGTCTGCAACTTTATTGACGATATCTACACTTGCATTGACTTGTTGAAGAAGCAGGACAACTTCAAGATCATTAATGAAAAAGACTACATTACCGATGCCAAGCCAAACGGCTACCGCTCATA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-4] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //