Array 1 241-1168 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAU01000227.1 Pseudomonas aeruginosa strain PDR Scaffold133_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 241 28 100.0 32 ............................ GGGATAATCTCCCAGCAAATGAGCCGCATCGA 301 28 100.0 32 ............................ ACCAGCATCATGGACATGTTGGCCACGTCGGC 361 28 100.0 32 ............................ TGCCGGTAGCGTAGTCGCCATCAACCTCTCCC 421 28 100.0 32 ............................ TTGTGTACGATGCCGTCAGAGGTCTTGACTTC 481 28 100.0 32 ............................ TTGGTTGTGGTCGGGACCTACGTCAATGGCGC 541 28 100.0 32 ............................ AAGTGCGGGCTTTTTTGTGCCTGACGATCTCG 601 28 100.0 32 ............................ TGGCCCAGCGTCACCTTGGCGATGGTCTCATC 661 28 100.0 32 ............................ AGTTCCATACGTTCTGGTTGAATCGCAGGAAA 721 28 100.0 32 ............................ TGGCTGAGCGGAACCTATATCTCAAAGGTGAA 781 28 100.0 32 ............................ ACAGCGGCTCGCCGTTGGCACCGAGTGCGGTC 841 28 100.0 32 ............................ GTCCAACGCCTCGATGTCGGCGTCTACCAGAT 901 28 100.0 32 ............................ GTCTGCACCGGGCACTCGCTCTGCCAGCCGTT 961 28 100.0 32 ............................ ACAGTCGGTCATCTTTCACGCGGCAAGTAATG 1021 28 100.0 32 ............................ TAATCCTGACAGGCCCGGTTCGCAGCCAGTAG 1081 28 100.0 32 ............................ AGCATCGAAGTCTGGCCGAACTTCCGCAATTC 1141 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGACCTCCAATTGCCTGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTAGGAGACCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : GTCGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTCTCTCTCCGGCAACTCCGCACACCTGTCAGCCACGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGAGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGGCAGAAAACTGCCAGCCTCAGGCCGGCAACAACGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCGATGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGCAGCAGGGCAGCGAGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 30315-31362 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN360883.1 Pseudomonas aeruginosa strain PDR Scaffold58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30315 28 100.0 32 ............................ GAAGAACATTGCTGCGGCGATCTGGGCCTCGC 30375 28 100.0 32 ............................ TGGTGCACAAGAATCGCAAGCGCATGGTGACC 30435 28 100.0 32 ............................ TTGACCACCCTGGAGACGACCGACCGGGCCGG 30495 28 100.0 32 ............................ TGATGCCCGACATGGGCCGCTTCGCGGGAACC 30555 28 100.0 32 ............................ TTGCAGTGATACCGGCGCTTGGACAGCAGGAT 30615 28 100.0 32 ............................ GCGTTCGTGGACCTGGCAGAGGTGGCGATCAA 30675 28 100.0 32 ............................ TGGTCAAGCTGGGCGTCCAGGTTCCGGTCAAC 30735 28 100.0 32 ............................ ACATTCCGCCTTCGTCGCGGGGTCGCACTTCC 30795 28 100.0 32 ............................ CGACTGTCCCGGTAGAGATCCGTCATCTTCGC 30855 28 100.0 32 ............................ TGGGCGACTTCAGCCCAGCGCTGGGCTGAGGC 30915 28 100.0 32 ............................ TGCGGGGACTGCTCTGGTGTTCCAGTCAGCGA 30975 28 100.0 32 ............................ ATATGCTCATCGGTGACGCCGGCGGCGCGCCC 31035 28 100.0 32 ............................ CGGCGAAGTCCCGTACCAGCCGCTCAGCAACG 31095 28 100.0 32 ............................ TTCCTTCCATTGGGTGAGTCGCAGCGGAGCCG 31155 28 100.0 32 ............................ AGCATTTTGCGCGGGGTTTCCCAAGCAACCGT 31215 28 100.0 32 ............................ TGGACGAGGTGGGAAAGGTCTTGCTCCAGGTC 31275 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 31335 28 78.6 0 T.........AC.....TC..C...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGCCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGTTTTTGGTCTG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGTGGTTCGCTCTCGGCCGGGGCCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGATTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCTCGAAGGTCTTCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 40518-39890 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN360883.1 Pseudomonas aeruginosa strain PDR Scaffold58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 40517 28 100.0 32 ............................ TGCTGCGTGGGTACACCATCGAAGATCAAGCG 40457 28 100.0 32 ............................ GGCACGACGTGCCGCCCACCCCGGCACCTGGT 40397 28 100.0 32 ............................ TGCTGACCGAAGCGTGTCCTTTGAGAACCGAA 40337 28 100.0 32 ............................ CATCGAACCGCCCTCCTCGATCAGCTCCGCAG 40277 28 100.0 32 ............................ GCAACGTCTCCGGCCAGCAGAGCCCGGACGGT 40217 28 100.0 32 ............................ TGTTCCGTGCCCTCCACCTTCGCCGAGGCAGG 40157 28 100.0 32 ............................ TAGCTGATCCCAATAGATCGCGCAGTATTCAT 40097 28 100.0 32 ............................ TCAGTGGCCTCGTTGTTGATGATCTTGTTGTT 40037 28 100.0 32 ............................ TCGCGGTGACGGGCATGACGGGCGCTGGCAAG 39977 28 100.0 32 ............................ GAATCGGTAGGCGTTCAACTGGCGGTTATCTC 39917 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGTTTCACTGCCGTCCAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTCCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCCTGGAAGCTCACGCTCCTCATACAGACGCAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGTATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATCTCCCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGATGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //