Array 1 214957-212425 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIY01000003.1 Salmonella enterica subsp. enterica serovar Tennessee strain NY_BAC0700002318-01 contig0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 214956 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 214895 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 214834 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 214773 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 214712 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 214651 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 214590 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 214529 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 214468 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 214407 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 214346 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 214285 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 214224 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 214163 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 214102 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 214041 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 213980 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 213919 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 213858 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 213797 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 213736 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 213675 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 213614 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 213553 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 213492 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 213431 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 213370 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 213309 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 213248 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 213187 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 213126 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 213065 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 213004 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 212943 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 212882 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 212821 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 212760 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 212699 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 212638 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 212577 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 212515 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 212454 29 96.6 0 ............T................ | A [212427] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 232218-231580 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIY01000003.1 Salmonella enterica subsp. enterica serovar Tennessee strain NY_BAC0700002318-01 contig0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 232217 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 232156 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 232095 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 232034 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 231973 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 231912 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 231851 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 231790 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 231729 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 231668 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 231607 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //