Array 1 178864-176733 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPUJ01000005.1 Pectobacterium actinidiae strain ICMP 9972 Scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 178863 28 100.0 32 ............................ CTAACAATCGCGACTTCCCGGCCGCGTTCATT 178803 28 100.0 33 ............................ GCGCACGTTCAGCGATGCGGGAACGGCGCTCAA 178742 28 100.0 32 ............................ TTATATCCCAGCGCTCGCAACTTTCTGGCCTG 178682 28 100.0 32 ............................ GACAATTTGGTGATCGGTTTCTCATTAGCTAT 178622 28 100.0 32 ............................ TATCTGCCGGTCAGCGATACGGCCAATTTTAC 178562 28 100.0 32 ............................ CGCCTGAGGTGTAACTCCAGCTATTCGGGACA 178502 28 100.0 32 ............................ GCGTGGAGCCTGGTAAATCTGCTTAGGCAATT 178442 28 100.0 32 ............................ CACTCGCGCATCCTGCGGGTTAGCAGTACCGC 178382 28 100.0 32 ............................ ACCAGCGCATACAACGCGCTAAAGGCGAAAAA 178322 28 100.0 32 ............................ ATCCTGCCGACCGGGTGATATTGCATGACCAG 178262 28 100.0 32 ............................ AGTCCAACACCGCCAGCCAACCCCGCGAATTA 178202 28 100.0 33 ............................ GAACAGCCATTTCACCCACTTTGGTGCATCCAT 178141 28 100.0 32 ............................ AACATCGCGGCACGAAACGAGGCACTTTCAGG 178081 28 100.0 32 ............................ AACACCAGAAGCTATCGCGGCACGAAACGAGG 178021 28 100.0 32 ............................ TGAGTATCAGATCACGCCGCTCTACGCCGCAT 177961 28 100.0 32 ............................ AAACATTTTCGCCATCGGGACGGCAACCGAAG 177901 28 100.0 32 ............................ AATCAGCTAATAAATCAACTCATAGCAGGAAA 177841 28 100.0 32 ............................ AGCACCGTGATGACCACGGTAACAAGCTCGCT 177781 28 100.0 32 ............................ ACCAACAGAATTGACTCGAGTTCGATGATGCG 177721 28 100.0 32 ............................ CGGTACTGCGTCGTAACTACACAGCAGACAGT 177661 28 100.0 32 ............................ CCACAGTTGTCTTTCGACACGGCAGCGACTGC 177601 28 100.0 32 ............................ GTAATGCATCATGCGGGTGATTCGATCAAACC 177541 28 100.0 33 ............................ AGTTGTCCGGTAAGGATGGTGCAGCATGAAAAT 177480 28 100.0 32 ............................ GGTGATAATTGATGAACGGGTATCACGGATGA 177420 28 100.0 32 ............................ TATGACGATGCGGATATGGCTCGGGCAATGGC 177360 28 100.0 32 ............................ AACACATTTACAGCGCGAAAAGGCGTTGCCAG 177300 28 100.0 32 ............................ TGGAATAATCCGCTCATCATCCTCTACCAGAA 177240 28 100.0 32 ............................ TGGAAGAAGGCCGCGAATTCGCTGTGCGCGTT 177180 28 100.0 32 ............................ GCGAACGCAAGGCTCAGTCTGTTCAGTGAGGG 177120 28 100.0 32 ............................ GGGATAGATTCCGGCATCACGTCAACGTGGCG 177060 28 100.0 32 ............................ AGATTGTTCACGTACAGCGTAACCGTCAGATC 177000 28 100.0 32 ............................ TGTGAAGGCTGGGACTGCTGTTGGCTCATACT 176940 28 100.0 32 ............................ GGCCGAATCCGAGTCGTATGGACCGTGCATTA 176880 28 100.0 32 ............................ AACTTCAAACTCCCGTTTCCCCCATTTACTTG 176820 28 100.0 32 ............................ TCAAGCCCTCGCGTGTAATCCAGCTCGGCAAA 176760 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTCCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGTGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGATACCAGCGAATAAATCGCAGGCTAACTATTTGATAAGAAGAAATATAATCCTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGGTGGCTGCAAAAAATATTACCCAGACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACAGCTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAACGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGAGCGGGCTACA # Right flank : GTTATCCCACTGCGATTTCACTGCCTATACGGCAGTTCACCTACGACCTTAAGCGCTGCTGTCTGGCTATTATCGAGGTCGCGCTGCACCAAGTACTGAATACGTTTAACCCTTAAATAACACATGTTGATGCCCTTCTTCCGTAACGTTTTTAATTAATGTGTTATTTTTCGGGGAATTAAAAATTGCGTATTAAGCGTTATTCACATTTAAAAACCATAATTTTTCCGTTAAAGTGTTCTTACAGGGAAATAGTACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAGGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATCAATAACGATAATATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTCTAAAGACGTTATGTACACCAAACCCTAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 187436-188963 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPUJ01000005.1 Pectobacterium actinidiae strain ICMP 9972 Scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 187436 28 100.0 32 ............................ AGATGAAGCAACTATCGAACGCCGAAGATGGC 187496 28 100.0 32 ............................ GTCGTCAAAATCTCAATACGATTGGCGATGCT 187556 28 100.0 32 ............................ AAAATTGCCGATCGCAGCCTGAACAGCACGCC 187616 28 100.0 32 ............................ TTGCCGTTTAACTTTTTGATGAGCAAACCGGC 187676 28 100.0 32 ............................ AGCTCGCCCGTTTTGGGGTTAAAGAACACGGC 187736 28 100.0 32 ............................ TGCTGGTTTCTCTTGGGCTGGAAACTGATGCT 187796 28 100.0 32 ............................ GTTATAGCAGTATTGATGCCCGTAGGCCGAAA 187856 28 100.0 32 ............................ AACATCTATCCGTGAGATAGCGAAACACGATA 187916 28 100.0 32 ............................ AGCGTAAAGCACGCGTCTATCCACCGACATCA 187976 28 100.0 33 ............................ GATTAGTTGCGCCAAACGCTGACCTGACGCCAC 188037 28 100.0 32 ............................ CTTGTCGCGATTCTTCCAGTAGCTTACGGCCA 188097 28 100.0 32 ............................ TCATGCAGCAGGATGGCGTCATGATCCATTGC 188157 28 100.0 32 ............................ AGAACGAGGAAATAGTCTTGTTCCAGATTGTC 188217 28 100.0 32 ............................ AAGATGCCGTTACGACCACGGCGGTTGATTTC 188277 28 100.0 32 ............................ TCATCATCAGTCTTGGCGTTAGCCAGACCGTA 188337 28 100.0 32 ............................ AACAAGTAGCAGCAGGCGGAACAACGGCAACT 188397 28 100.0 32 ............................ ACAGGTGATGGTGTTATCTTCGAACACCAGGT 188457 28 100.0 32 ............................ ACTGACATGCGGAATTACAACGAATACTCCAG 188517 28 100.0 32 ............................ ACAGACGACACAGACGCATCGGGCAACGTAAC 188577 28 96.4 32 .......A.................... GTACCGTGCCGTTCCTGGTCGAGCTGGCCAAC 188637 28 100.0 32 ............................ ACAGCGCCACCAGTTCGCTTAACTTGCGATGC 188697 28 100.0 32 ............................ CTAAAACGTGGGGAGGCTCATCACGCAGGGCT 188757 28 100.0 32 ............................ GTGGCCGAGGCCGCAGAGTGGAACGGCAAGGC 188817 28 100.0 32 ............................ CACGCGCCTTGATTCAACGCTGCTTTTTGTGG 188877 28 89.3 32 .G.........T.....T.......... ATGACTGATAATGCGTTGGCTGTGGTATGGGG 188937 27 82.1 0 ...A.........C.......-....TG | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAGTGTAAAGCCATCCCTGACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGCTCAAGAGTAGCGCCGAACGGTTACGCCGACGCTCAGTCAGCAAAGGCTGGTTGACGGAAGCGGAAGCCGCAGCACGAATTCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAAATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGATACCCCTGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCTGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAACCTTAACG # Right flank : GCTTATCAGAATGCGTCGCTGACGCGACGCATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGACTGCCGCCGTGGTTGCGATGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGTGCCGGCATGTCGTCACTCCCCTCATAAGTATGACGGTAATACGGTTCATCCTCCGGCACTAAGCGATTAAAGAAGCTCTCGAAATCCTGCCGTACCGTAGGGTCAGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACCTGCATCAACCCGACGTTTATCTGGCGCAGTGCAGTAACCTGCACCAATATTTCATCGGTCACCAGATGAAAGCCTCTGGCTTTTGGCTTCAGGCGGATTTCATACTGCGTCCACATCGTCGGCTTCCCTTTATCAGGCTTCACGCGCCAGAATAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //