Array 1 65-1660 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIQQ01000006.1 Pectinatus frisingensis strain MB255 PFRF_99.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 65 33 100.0 35 ................................. CTGATAGTTGAGTGATGATGGATTTATATATTCTA 133 33 100.0 35 ................................. TGTATAATACTGCGGTATAATGCCTTTATGTCCGC 201 33 100.0 34 ................................. CTCCTGCACTATGTCCTCCAAAATCTGCGACAAG 268 33 100.0 34 ................................. CCTTGATGATATTGAAGTTTTATTTGGGGATATA 335 33 100.0 35 ................................. GGTAACTTAGATGATAACCTACGCACTGAAAAGCC 403 33 100.0 35 ................................. CACCCAATCCGGGATTATCTTAATAGTTTAAAATG 471 33 100.0 34 ................................. ACATTAGCACTGATACGCCAGAAGGCTTGATAAA 538 33 100.0 35 ................................. ATCCAATCAGCGGGGAGATTGAAGCCAATACCATC 606 33 100.0 35 ................................. GTTTTTCGCTGATAGCTAAATCAGCGTCATAAAAA 674 33 100.0 34 ................................. ACCATTCGGCAACAGCAAGCACACAACCTGTTCG 741 33 100.0 34 ................................. TTTTATCCAGTCTTATATCGGAACACAAATATTT 808 33 100.0 36 ................................. ATTTAATATGACCCCCATCATCATTATTGTTATGAT 877 33 100.0 36 ................................. GAGCATTATCTAATTCCCGGCATGGATAAGATTATA 946 33 100.0 35 ................................. ATAGAATTGCCAGTTATCAATGTTCGCCCCGCAAG 1014 33 100.0 34 ................................. AAACATCTGCTAACAATTATTGTACGGTGCTTTG 1081 33 100.0 36 ................................. AAAACAGAAGAAGAAATAACTCCAAAAATTAAGCAA 1150 33 100.0 35 ................................. TGGAACTATCTGCACAAGTTCTTCCATAAGTGGGG 1218 33 100.0 36 ................................. TTATTGCCAGATGTGACGGCCTGCCTATTGTATGGC 1287 33 100.0 35 ................................. ATGAAATAGCACCAATTTATGATTGTGGGTCTTGC 1355 33 100.0 35 ................................. TTATTAAAGTGGGCGTAGTTATTAGCTACGCCCTA 1423 33 100.0 35 ................................. TCTAGGTGCCCATGATCTATAACCATCCGCATAAG 1491 33 100.0 35 ................................. TCTGCTTCGACTACCATAAAACCATCTTTACGTAA 1559 33 97.0 36 ................................T CTTTGCTTCCATTTTGATTACCTCTTTTTAGTTTAT 1628 33 84.8 0 ...........T.............G.G..CT. | ========== ====== ====== ====== ================================= ==================================== ================== 24 33 99.2 35 GTCGCTCTCCGCATGGAGAGCGTGAATTGAAGC # Left flank : CTCTCCGCATGGAGAGCGTGAATTGAAGCTTCAGATTTAAGTCCTATCCATATCAGTGTTACGCG # Right flank : CTCTCGTAAAATAGCCATATTCAATGCTTAGGTTGCTAATTTTGTTGTTGGTCGATTTCCAATACCCAGCCTACCAGTTTCCTTCTTGCAAAATCTAATGCCGTTACCAAATAACACCATTTGTTGCCAACTTTAATATAAGTAAGCTCTGCAAGCCATATGGTATTAAAATCGATCACATCAAATTTGGGGTTTAGAAGATTGGAAAACACTTGTTCTGGATTTTTTTGTATAAAAGAAAACCACGCGATAGTCGCGTGGTTCAAAAAAGCTTAAGCGGTGAGTCCTAATGTGCTAACCTGTAAATAAGCCTGCCAGCTTAAAATACAGATTATACATTAGGAGATGCCACTAAATGTCGAAACAATAAAATAATGACACACATAGTTTAGCACATAGTGTATCCTGAATGTAAGAAAAGCAAACGTAACAATAATTCTTGCAATGCTTTTTATGAGATGGAAGTAGGTCTTCCGTAATCAATAAGCAGGTATTGATTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCATGGAGAGCGTGAATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.40,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 12794-13370 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIQQ01000019.1 Pectinatus frisingensis strain MB255 PFRF_100.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 12794 33 100.0 35 ................................. AGAATATCAGAAACGGTTATCACCCATACAAGCGG 12862 33 100.0 35 ................................. AATCTATCGTAAAATAGAAAGAAGGGACCCTATGT 12930 33 100.0 36 ................................. AATCATTTTTGTACCGTCAATTTCGACTTTTAAATA 12999 33 100.0 34 ................................. TATGCCGGTATGCCCGTAAAATCTCAACATTTAG 13066 33 100.0 35 ................................. ATTACAGCCTTTATTGTTGCAGTAAACCATATTAT 13134 33 100.0 36 ................................. AGCTTGGAAAATGTTAAGAAATGGCTCGCAGATAAC 13203 33 100.0 34 ................................. AACTACCGTAATCAACACACCAATGAGAAAATGT 13270 33 100.0 35 ................................. GTCTATCCATAAAACACACCAGCGCAACCATGCAC 13338 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 100.0 35 GTCGCTCTCCGCATGGAGAGCGTGAATTGAAGC # Left flank : CCACCATTTTTTTGGAAATGACATGTCTATTAAAAAAATAAAAAGGAATTAGTTATGTATATACTTGTGTCATATGATATTAATACTATAGATTCTGATGGTAAACGGCGTCTCAGAAAAGCAGCAAAAATTTGTCTGAATTATGGACAGCGTGTTCAAAATTCTGTATTTGAATGTAAAGTGGATGAAGGACAATATCTTTTGTTAAAACATCAGCTATATGAGATAATAAATGAAACCGTTGATAATTTAAGATTTTATCGATTAGGGAAAAATTATAAAAAAAATATTGAAAGCATGGGGTTGAATAAAGCTTTTGATATTGAGGGTTCACTTATTTTATAGTGCGAGTAGGAAGTACTGGATAATTTCTCCTGCTTTCGCACTATAAAATAGGATAATTTGCCAATAATAGGTATAATAAATTTGGTTATTTTGTATAAAAATTTTTAAAGTACTATATTTGCTATATGTGATATTAAAAAATACTATATGTAGCG # Right flank : ATCATACTATTAACATTCGCAACGTTATTAGTATGTCGCTCTCCGCATGGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCATGGAGAGCGTGAATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.40,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //