Array 1 60608-63300 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJV010000009.1 Bifidobacterium felsineum strain CP4 Contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================================================================================================================================== ================== 60608 29 100.0 32 ............................. ACGGCGGGGAGGCCGTCGATCCGAACACCGGC 60669 29 100.0 32 ............................. TACGTGATCCTCGTGTCTCGGAAGCGGCCTTC 60730 29 100.0 33 ............................. GTTTGGCGTCGCGGCCGTGATTTAATCGAGGCC 60792 29 100.0 32 ............................. TATGGGTTCCATACCGAAGCCTATTCGACGCT 60853 29 100.0 32 ............................. TGTCATAGTCGCCGTAAAACTCACTCAAATCC 60914 29 100.0 33 ............................. CCACCCCTAAAACACGCTTTGCGTAGTGCGTAC 60976 29 100.0 32 ............................. TCACCGGAACAAGTCTGGAACAATTCTGCAAA 61037 29 100.0 32 ............................. AAGCCGTAATTATGCTCATAATAACTCAACAA 61098 29 100.0 32 ............................. TGCGGTTCCTCGCCAGTAGGTGAAATTGGTTT 61159 29 100.0 32 ............................. CCAATCTACGCGGCATTGGACGCCGGACAGGA 61220 29 100.0 32 ............................. CAGTCTCGGCAGTGGGAGGATGGCGAGACGGA 61281 29 96.6 32 ............................A TCGCGGAACAATGGGACGTTGATTTAACAAGG 61342 29 100.0 32 ............................. GACACGAGACTACGTGGCGTCTCAGGCCTCAG 61403 29 100.0 32 ............................. GAATCGCTTTACAGCATTAGCGTTAAGGCTAG 61464 29 100.0 32 ............................. ACTACATACGCCAACGAGAACCAAACGCCGAA 61525 29 100.0 32 ............................. GCGCACATCAACCCGTTCGGATACTGCGGGTT 61586 29 100.0 32 ............................. GCGGAGACCGACACCAAGGTGAAGGTGGCTAC 61647 29 100.0 32 ............................. GGCGGGAACAACGACAAGCCGAAGGACAAGCG 61708 29 100.0 32 ............................. CGCTTGGAGCCTACCAGCTCAAGGACGGCACT 61769 29 100.0 32 ............................. TTCGTGCCCTCAAAGCACGTTCCACGAGTGCC 61830 29 100.0 32 ............................. CAGCCGCCGTTACGGTCAGGCGGCTACTCATA 61891 29 100.0 32 ............................. GCTCAGGCTATGCCGGACTACATAAGCCCGGT 61952 29 96.6 32 ............................T TGCGTGTCGGTTTTGTCTGCTAGATAATCCAT 62013 29 100.0 32 ............................. CCGCCGTCCTCGTAATTGGTGACGAAATATTC 62074 29 100.0 32 ............................. TCGAAGTAGCATTCCGAGCCCGCGTCGGATTT 62135 29 96.6 32 ............................T GCAGCCGATTTGGACGGAGAAGCGGAATGAAA 62196 29 100.0 33 ............................. AACTTGTTGATACCTGATGATGATACCGGTGTA 62258 29 100.0 32 ............................. GTGACGAGTCGCGCCGCGACCGTGTACACGAT 62319 29 96.6 32 ..................A.......... GCGGCCGGCGTCGCCAAGGTCGGCTTGGCCGC 62380 29 100.0 32 ............................. CATTGATTTTCGTCGTGAGTTCCGCGACATTG 62441 29 96.6 32 ............................T AACAATGATTCCGACGATTTCGACGATTCCGA 62502 29 100.0 32 ............................. GCCTGCCAAACGTCCCACACGTTGTAGACCGG 62563 29 100.0 32 ............................. TGGGTGAAGGACGCTGGCCGCGACACCATCAC 62624 29 100.0 32 ............................. CCTCGCAGGTAGCCGGTCTCCGACGCGGACAC 62685 29 100.0 32 ............................. TCATGTTGTTCGGCGTGTAGTTCGACGTGAGC 62746 29 96.6 32 ............................T GCGGGGGTGAGGTCTCCGGAGAATATCCGGTC 62807 29 96.6 31 ..................A.......... GTGAATGGTCGGGAATCCTTGGTTTTCCAAG 62867 29 93.1 33 .....T......................C AAAACGATGAGCGGCCGTCTCGCACTTCTTTAC 62929 29 100.0 32 ............................. TTCTCATTGCTATTCGGCAGACTTCACAAAAG C [62934] 62991 29 93.1 32 ...................A...A..... ACTCCGCGACACATCCTGGCCGGCCAACGTGG 63052 29 93.1 191 ...................A...A..... TGGCGCGACGAACGCCGCAGACGCGACAAGAAGAGCGCAAGTAGCAACGAGGTCCCGGATTCTCTACCTATCCGGAACCTCGCCCCAATCATCTCGCAAAACACCATGAAAACCAAAATTCAAGGACTGAACGGACTGGCCTTCGCCGTCATCGCGGCCGGATGCTCATTCGCCGAGGTCGCGCCGTGGAT C [63057] 63273 28 86.2 0 .....-..T...........A....C... | ========== ====== ====== ====== ============================= =============================================================================================================================================================================================== ================== 42 29 98.6 36 GTTTGCCCCGCGCCAGCGGGGATGATCCG # Left flank : CGATGATGGTAGTGGTGTTCGTCGTAGCTGTATTAGCCAATGGACGTTCCTTATCGCTCGCTAAAGTTGTGGTATTCCCCTGGGAGCGCGCGCATGGCCACCATATGCCTATGCGGACGCTTCATTGTCGACGGCATGCCCGCAATATGACACACCTCATGCAAATTACAAAGAATAGCGATATGGGGCGACAAATCACACCATAACTAGTGCGCCGCTGCATACCCAAATCCTCTACTCTTTCCGTTTTTGTCCAAGCGAATCCAACTGCTAGCCGATGAAACTAATACTTTCTGGCCTCCTATCAAACAGCAATAATTCGAACGCTTGGGTACTCTCAAATCAACATGTACAATATGTAAAAAAAATTAGAAGGGAGATACCGTGATTTCACAATCCTTGTATCACCGCCACCATGCCCTTCATCATTCCAATCGCTCACTGTCGCAATCAAATTATTTCATTTGCGTCATCATTCGTTTTTGGCATAAAATCAGACT # Right flank : GTTGCACGATAAGTTCCATAAACGCGACAAAAAGAAGAGCTCATACACAATACTTGCACTCATCACCGTAGATACCACTATTTTCCGTATCTCCGATAGCGTGAAGCTTTACTCCATCCGGTCTTTCTCTCACCGTTCTTACGCTGCTTATGATTTGTATTCGGTCTCATGATGAGCTCAAGCCCATCAAAATCGACAGGCCGCCATTCTTGCCCACACACCTTGAACGACATCCCCTGCTCATTATTAGCCGGGTACACCATGACAGCGCGACCGACCCCAATATTTTCAAGTATTTGATTCCACAACAGTTCACGGACACGCGCCGTGACTTTTCCCACATACACCCCCGGAGAAATCTCCATCAGCCACCGCGTAAGATGCCCTCGTAACTTGGGCGGCGATACAGTTAGCACAACCACAATCATCCGCGTATTCCCTTACGCTTAGAATCCAGGATCATCATCGTTGAATAGAGCTAAAGATGACTCGACGTCCTC # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCGCCAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //