Array 1 2563-1442 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFMH01000001.1 Klebsiella pneumoniae strain 3DZ2-3B NODE_1_length_122753_cov_165.988, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2562 29 93.1 32 ............TG............... TAACTTTACCCCGGATCCTGATGAACCTGTAC 2501 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 2440 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 2379 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 2318 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 2257 29 96.6 25 .....T....................... AACATCAGTGGAAATCCACTGCGGC Deletion [2204] 2203 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 2142 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 2081 29 100.0 32 ............................. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 2020 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 1959 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 1898 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [1893] 1836 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [1825] 1774 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [1763] 1712 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 1651 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 1591 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 1530 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 1469 28 86.2 0 ..........A.....T......-....A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 95.1 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12666-10016 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFMH01000040.1 Klebsiella pneumoniae strain 3DZ2-3B NODE_38_length_25136_cov_124.93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12665 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 12604 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 12543 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 12482 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 12420 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 12359 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 12298 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 12237 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 12176 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 12115 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 12054 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 11993 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 11932 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 11871 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 11810 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 11749 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 11688 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 11627 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 11566 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 11505 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 11444 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 11383 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 11322 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 11261 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 11200 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 11139 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 11078 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 11017 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 10956 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 10895 29 100.0 32 ............................. CCGCTTTAACCCGCTCAGGCAGATCCGGGTGA 10834 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 10773 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 10712 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 10651 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 10590 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 10529 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 10468 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 10407 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 10346 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 10285 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 10224 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 10163 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 10102 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 10044 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //