Array 1 308865-309866 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKNM01000005.1 Listeria monocytogenes strain NRRL B-33370 PROKKA_contig000005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 308865 29 93.1 36 ..........T...T.............. TCTGATACTTTACCTTTGTCCTCTAATGATTGTATT 308930 29 89.7 37 ..........T...T........T..... GTAGTTTGTGACCGTTTAAAAACATAATTTGAAAAAC 308996 29 96.6 36 ..............T.............. TTACCCGTTTCATCATTTCCAAGCGTTGCATCAATG 309061 29 100.0 37 ............................. TCTGTATAATAAGAAGTACGTTTTGCGACTGGTGCCA 309127 29 93.1 36 ..............T...A.......... AAAACAACTAAAAGACCGCCTACTATTTATACTCCT 309192 29 93.1 36 ..............T...A.......... TTTAACGTTGGCCCAACATTTTTATCTGAGAAGGGG 309257 29 93.1 35 ..............T...A.......... TCTTTTAACCTAGCTCTTATCAATGTTTGAGTAAC 309321 29 93.1 36 A..............C............. GATTTAAAGTTAGATATAAATAATGTGATTTTAGTT 309386 29 93.1 35 ..........A...T.............. ATTTACGCAAGAACTGGAACTATTAAAGCCGCTAT 309450 29 93.1 36 .........G....T.............. AAAGGTAATACGAATTTATCTGTTAGTTGAAAAATC 309515 29 100.0 34 ............................. GTGTACTCTAATGCCAAATTTAATTCCTCCTATT 309578 29 100.0 36 ............................. TCGACATAACACATATATTTAAAATCATTAAAACTA 309643 29 93.1 36 ..........A...T.............. AATTGTTTGGCTAAAGCGTCAGAATAAGATGTTGTG 309708 29 96.6 36 ..............T.............. AAGGCAGTTAAGTAAGCAGCGACAGGGAACGGAAAT 309773 29 100.0 36 ............................. GGAATCACGGACAGTCAGGCGAAGATAACTAAACTG 309838 29 75.9 0 T.....A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 16 29 94.0 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCATAGAAGTTATCGCTTGCGCAACCCACTCTGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGGGATCGACAGAATGTTGTAAGTGGTTGGAGGAAGGGAAGTTTGACGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCACCATCCATCAAACCAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCAC # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 325462-326984 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKNM01000005.1 Listeria monocytogenes strain NRRL B-33370 PROKKA_contig000005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 325462 29 100.0 36 ............................. GTTAAAAACAAACGTGTCACACACAACTTCTTGTTT 325527 29 100.0 47 ............................. ATCGCCATCGCCATCGCCGTCGCCATCGCCATCCACTTTAAAGACTC 325603 29 100.0 36 ............................. GCGATTAAAATAGATTTTCCGTTTTTCCTAGCCATC 325668 29 100.0 36 ............................. TGTTCTACTTTTATAAAATTTTGTTCGTTCGCTCTC 325733 29 100.0 35 ............................. ACCAGAGTCAATATTATTTACTAACCAGTCGTCAT 325797 29 100.0 35 ............................. ACTTATAAGTGGTCAAATAAAGAAAAAACTATATT 325861 29 100.0 34 ............................. ACACTTGGGAACGGTATCATAGGCTCAAGTCAAG 325924 29 100.0 35 ............................. AAAATCCTTGAAATTTAAATCGCTGTTGTTGTTGT 325988 29 100.0 36 ............................. CCAGAAGGTGGACAACATGGTGATGAATGGTACAAC 326053 29 100.0 35 ............................. AGCCTTATTGACGGTTATAGAACGTTTGTTGAAAT 326117 29 100.0 36 ............................. GTCAAATACGGATGGTGTACTAATAAAAATCAAAGA 326182 29 100.0 35 ............................. AAAAAATCGGAGGCAAAGGTATCATTCAAATCACA 326246 29 100.0 35 ............................. GACCTTTTGATTCATGGTTCGCCTTGTCAAGATTT 326310 29 100.0 34 ............................. TTTATATGCTTAATTCCTATCTCATCTAATTCCT 326373 29 100.0 36 ............................. TATGTCGCGACCTCATTCCGTTCTCGTCTGGATTCT 326438 29 100.0 34 ............................. AATGATGACGGGGCTTATTGACGCAATTATTCAA 326501 29 100.0 35 ............................. TGTGTTAAACACCTCGCCCTTTCGATAAGCTTTGT 326565 29 100.0 36 ............................. TCGCCTAGACATGTCGCAACATTTCGCAACCCCTCC 326630 29 100.0 34 ............................. TTTGGACACTTGAGAAGGAGAACACGAAAGCTTC 326693 29 100.0 37 ............................. CGCGATATTTGCGGACAACCCCCGCACCAAAAACGAT 326759 29 100.0 34 ............................. TCGCTAACATTTCAGCCCACTCATCAGCCTCAGT 326822 29 100.0 37 ............................. CTCGCTCTAGCAATTGCTCATCAAAAATATAACTCCA 326888 29 100.0 38 ............................. AAGTCCGAGCGTTTTCGCTAACGCAGCTGATACATCCG 326955 29 93.1 0 .......................A....C | C [326978] ========== ====== ====== ====== ============================= =============================================== ================== 24 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTATGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTAAAGTTTTTAAGCGAAAATCTAAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCTCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCAACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCTGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTTGCAAATAACGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //