Array 1 97616-99108 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZAH01000009.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N42518 N42518_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97616 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 97677 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 97738 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 97799 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 97860 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 97921 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 97982 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 98043 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 98104 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 98165 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 98226 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 98287 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 98348 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 98409 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 98470 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 98531 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 98593 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 98654 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 98715 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 98776 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 98837 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 98898 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 98959 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99020 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 99081 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115241-116839 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZAH01000009.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CVM N42518 N42518_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 115241 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 115302 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 115363 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 115424 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 115485 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 115547 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 115608 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 115669 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 115730 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 115791 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 115852 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 115913 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 115974 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116035 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116096 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 116158 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 116261 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 116322 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 116383 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 116444 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 116505 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 116566 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 116627 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 116688 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 116749 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 116810 29 96.6 0 A............................ | A [116836] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //