Array 1 233377-232787 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH600070.1 Beggiatoa alba B18LD Begalscaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 233376 35 100.0 36 ................................... AGTGTTAAGTCACCTGATGATGTGATTGATGTGCGC 233305 35 100.0 35 ................................... GCCTCCAGTAGCAGTGACCCCTCGAAAACCTTGAC 233235 35 100.0 35 ................................... CAACATGCGTATTCCCCGTAGTAGTCTGAATATCG 233165 35 100.0 34 ................................... ACAACGAGTGTCCCTCGCTCAGGCAAGATAATTT 233096 35 100.0 35 ................................... CTCATCTATTGCCATTTTTACTTCCCGTGGCACGA 233026 35 100.0 35 ................................... CTCATCTATTGCCATTTTTACTTCCCGTGGCACGA 232956 35 100.0 29 ................................... AGTCTCTTTAATGCCGTTGGTAATCTTGT 232892 35 100.0 36 ................................... TGATAGGACACTCGGGGTATCTTCCCAATGAACGAG 232821 35 88.6 0 ..............................T.TTA | ========== ====== ====== ====== =================================== ==================================== ================== 9 35 98.7 34 GTTACAGCTGATTCGCCAAAGCAGGCGGTTGAAAC # Left flank : TTGGGATATTAGCGAAAATAACGAGTTATTTAGTTTACGTTTACCCTCACACAGTGGCTATCCAATACCGATGTGGGATATGGATTTTCAATGTATGGCGCAAACCTGTTGGCTTGCTGTGCCATTAACTCGCGGTGAATTGCTCTTGTATAAAATGGGACGAATTTATTAAGACAAACCTTAAGTGCTTTTTCGCAAAATTGGGGGTTGTCATCGTTTTGCTGTTTTTTTAATGAAGGTGTATCAATATCGAGTTATTCATTTCGTCGGGATAAGCGGGAATAATTGAATAGTCCTTTAAAATCAAGAAGAGAGTTCTACTTTTCGAGGGTCGTAAAATGGGCCGTTTTTTTAAAAAACGGTATTTGTATTTTGTTGATTTAACAAGATATTTTCTTACGCAAGAAATATGCAAAAGAGTTCTACTTTTTTGGACAATTTTTCATGAAAATTTTGGCTTGCAAGCAAGTGAAAAATATGCGATTATTTTGACCGTCGGG # Right flank : AAGACGATAGAAATAAAAAAGCCTCAGTATCAATATACTGAGGCTTTTTTTTTGTCTGAATCAGAATTCACAGAATTTTCAGAATTAGCAGAATTTAAAACCCTTAAACCAAAAGATTAATGCGAATAACGCTTTTTAATTCTACCTGAGTTTGGCGAGTTTCCTTTAAAAAGACAACAGCTTGTCTGAATCAGAATTTTCAGAATTAACAGAATTTAAACCCTAAAACCAAAAAGTCAGGTGAATTACGTTTTTTAATTCTGCTAATTCTGAAAATTCTGTGAATTCTGATTCAGACAAAAAAAGACCTGCTAGGTTTTAAAAACCTAGCAGGTCTGTTGGAACATGCGAAAAGATTAAAACATTGTCTGAATCAGAATTTTCAGAATTAACAGAATTTAAACCCTAAAACCAAAAAGTCAGGTGAATTACGTTTTTTAATTCTGCTAATTCTGAAAATTCTGTGAATTCTGATTCAGACAAACTACTCGCCAATCTCA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGCTGATTCGCCAAAGCAGGCGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 431890-431438 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH600070.1 Beggiatoa alba B18LD Begalscaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 431889 36 100.0 33 .................................... TATTAATTTTGACACCATAATGGTTAGTGACTG 431820 36 100.0 33 .................................... TAGAACAGTTATATTGTTCATGAAAGATATTAC 431751 36 97.2 34 ...................................T CCATTAGTTTTCGATTACTATCTTTTACTTCTGC 431681 36 100.0 31 .................................... TTGAATAACTCCACCGTTACCTTAATCGTAT 431614 36 100.0 34 .................................... CTTTACCTCTACTTTGTTACTACTACATACACCA 431544 36 97.2 35 ...................................G CATCGGAATGTTTTTTGACAAATTCCTCAACTTCC 431473 36 88.9 0 ..............................T.TTG. | ========== ====== ====== ====== ==================================== =================================== ================== 7 36 97.6 34 GTTACAGCTGATTCGCCAAAGCAGGCGGTTGAAACA # Left flank : AATGGATGCAAACTGCCCGCACTGTCGCGCTGTTAGTAGGTTCTCCTGAAGGATTAGCCCCTGCCTGTTTAGAACGTGCTCAACAACGTTGGTCGTTATCAGCCTTAACCTTGCCTCATCCTTTAGTTCGCATTGTTGTTGCTGAACAGATTTATCGCGCTTGGAGTGTGTTACAAAACCATCCTTATCATCGGGCGTAATAACTTTAATTTGAAGAGTTTTGCTGTTTTTTAATGAAGTTGCATCAATATCGAGTTATTCATCTCGTCGGGATAAACGGGAATAATAGAATAGTCCTTTAAAATCAAGAAGAGAGTTCTACTTTTCGAGGGTCGTAAAATGGGCGGTTTTTTTAAAAACGGCATTTGTATTTTATTGATTTAATTGCATATTTTCTTATGCAAGAAATATGCAAAAGAGTTCTACTTTTTTGGGCAATTTTTCGTGAAAATTTTGGCTTGCAAGCAAGTGAAAAATATGTGATTATTTTGATCGTCGGG # Right flank : AGATGATAGAAATGAAAAAGCCTCAGTATGTTGATACTGAGGCTTTTTTATTTGCGCCTTAACCTGAGTTTGGCGGGTTTCTTTTAAAAATTATCTGAATCAGAATTCACAGAATTTTCAGAATTAGCAGAATTAAAAAGCGTGATTCACCCTAACTTTTTGGTTTGAGGGTTTTAAATCCTGCTAATCCTGAAAATCCTGATTCAGACAATATTTTAGTCTTGTCTGGTGAATCTTTTTCGTGTGTTCCGACAGACCTGCTAGGTTTTAAAAAATCTAGCAGGTCTCTGTTTTATTTTATAAAATTCGCAAAACAGGGGTTAATTAATTCGCTAAAACTTGTGTTAAAGTTTTCGCAAAAAATTCAATATCTTCAGCGGTGCGTGTTTCTGTAGCACACACTAATAGAGCATTCCCTAATTCAGGATAATAACGACTGACATCATAACCACCCCAAATGCGTTGTTGTGCCAGTGCGGTTAAAACCTCTGCAACGGGTT # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGCTGATTCGCCAAAGCAGGCGGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 3053869-3053494 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH600070.1 Beggiatoa alba B18LD Begalscaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 3053868 35 100.0 32 ................................... TTGTCGTTGCCTCTTCTTGTGGTTCCATATTT 3053801 35 100.0 33 ................................... GTTTTTTTTACAACATCCAATAATCTCGGATGT 3053733 35 100.0 34 ................................... GCGACCAGATATTTTACTTGCAAGCAAACGGCAG 3053664 35 100.0 34 ................................... TTTATAGAGTCAAACCCTAGTACCTCCCTGACCC 3053595 35 100.0 32 ................................... CTGCCATTTTTTGTAGCTAAATTCCATGCGGC 3053528 35 85.7 0 .....................T........T.TTG | ========== ====== ====== ====== =================================== ================================== ================== 6 35 97.6 33 GTTACAGCTGATTCGCCAAAGCAGGCGGTTGAAAC # Left flank : ATAACGGATTTTCGCTCTTCATAGACCACAGCGGACGCGACCAGTATTTTTATTCAGCAGAGCCCCGCGTTGGTAAAAATGACTATCACGGGGGTTTAAGCCTGTCTTTGTGGATAGATGCAGGGGGAGCGCAAGATTTTTATAACAACAGTGTGGAGGCGAATAACCGTACACATGCAACAGGGGGAGAATTTGGGGTGTTGAAGGATTTTTAACCTGCTAGGTTTTGAAAACCTAGCAGGGCTTTTTTTGTCTGAATCAGAATTCACATAATTTCAGGAATGATTGAATAGTCCTTTAAAATCAAGAAGAGAGTTCTACTTTTCGAGGGTCGTAAAATGGGTAGTTTTTTTGAAAAGGAGTGTTTATATTTTATTGATTTAATTATATATTTTCTTACGCAAGAAATATGCAAAAGAGTTCTACTTTTTTGGGTGATTTTTCGTGAAAATTTTGGCTTGCAAGCAAGTGAAAAATATGCGATTATTTTGACCGTCGGG # Right flank : AAGACGATAGAAATAAAAAAGCCTCAGTATCAACATACTGAGGCTTTTTTATTTACGCTTTAACCTGAGTTCGGCGAGATTCTTTTAATTCTGATTCAGACAAAAAAAGACCTGCTAGGTTTTGAAAACCTAGCAGGTCTGTCGGAACATGCGAAAAGGGTTGACCTCACTTTAACCAGCAAGATTAAAACATTGTCTGAATCCTGATTCAGACAAACTGTTGTCTTTTTTAAAAGAAACTTGCCGAACTCAAGTTAAGCTAAATTGTGTTGAACCCGTTTTAATAACAAGGTTATATACATAATGATAAAAACTAAACCAAGTAAACAACTTAAATAAGCTATCCATCCCCAATTTTTATAAATAAATACGGGTAAATAAGAACCTGTGCTTCCACCTGCATAATAAGAAGCAATGTATAACCCGTTAATAATTCCCTTATTTTCCACTGCTAAATGATTTAAATAGCCTGAAAGTACGCTATGCATTAAAAACATACC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGCTGATTCGCCAAAGCAGGCGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 3824923-3825162 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH600070.1 Beggiatoa alba B18LD Begalscaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 3824923 29 96.6 41 ...G......................... AGTTGTTTTTAAAAAACCATTGTTTTATTTATTAAAATATC 3824993 29 100.0 41 ............................. CACTAAATCAGGTAATTACCTAATTTAGCTCTATAATTTAA 3825063 29 100.0 41 ............................. CACTAAATCAGGTAATTACCTAATTTAGCTCTATAATTTAA 3825133 29 93.1 0 ...........G................A | G [3825159] ========== ====== ====== ====== ============================= ========================================= ================== 4 29 97.4 41 TGTAAGTGTAATTGCTTACGCTTACATTC # Left flank : TCAGTTAATGTGGTGTCAGGGTCACTTGTACGAGTGTGTTTTGTTGTGGGGTCACTCGTACAAGTGAGGTCGAACACACTCGTATGAGTGGGGTCTAGTTGTTTGAGTGTTTCACGTCCTTTATGGGTAGCGATTAAAAATCCTATGCCAACTTGTTTTAAAAGTCCTTGTTCTTTCAAGGCTTCAGGGGTTGTTTGTAGGTGTCTGCACAGCTCCGTTGCTGTATTTGATAGCGTCATCATTGCATTCTCTCCATCATTTCGTAGTCATCAAGAACCCTTGTTCTTGTGTTGTCTTGCCAAATTTCAGAAGGGTACAAATTAAAGTATTTAGCCAGTGCTAAACGAACCGCTCGCGCCCCTTTTCCGTTTAAACTTTGGTAAAGAATTTCGCGCGATGTTTGAAAGTATTGCGCTGCTTCTTCCATCGTGCCGAACTCCCCCCGTAGTTCTTCTATCATCGTTACTTTGTTCATAGGGGATTTCCTACGTATAATTGAG # Right flank : ATAGAATAGGTATATTTGAGTAATATGTCAAGCACAAATGAGAATATAAATATTGGTAAAAGACTTCTTTATTTAAGAGAGTCTAAGGGATTGAATCAGGAAGAAATTTCTGACTCTGTCGGTATATCTTTGCGTGCATATCAAAACTATGAAAGGGGAGAAAGAACGATAAGCAAGGAACTCATACATGCTTTATTAAGCACGTATGGGGTTGACCCTGTATGGCTTCTAACTGGTGACGGGAACATGTATAGAAATGAAAAACCAGCCCCACGAACCCAAGCCATAGTCGAAATGATAGAAAGCCTCGACGATAGTCAGAAGCAAAAAATTTATGCTGTTATTGAGGACGCGAAACAGTTCACCGAAATGAAAAAACAAATTAAACAGCTTAACCAGCTATTAGGCACAATGAAAACTGCTTAGATAAGGAAGTAAGAAAATGCGTTTAGTAATCACAATGTATCCTGATGATGAAGATGGTGGTTGGGTAGTCGAAT # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTAAGTGTAATTGCTTACGCTTACATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //